TCONS_00048376 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048376
Unique NameTCONS_00048376
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length770

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048376 ID=TCONS_00048376|Name=TCONS_00048376|organism=Clytia hemisphaerica|type=transcript|length=770bp
GGTGTCGCGAAGAAGAATTAACCGAGGACCACCAGAAAACTGTacaaaca
ttacgtcataatcaTGTGAACGAattacgtcatcaaaacaatgatTGGAC
GCAAGAAAAGTGTAAATTACAAGAAGAAGTTGATGCGTTGTCCTTTATGT
TGAAGgaGACTGAGGAGAAGTACAGACAACGCCCTTCAAGAGATGAGGAC
GTTTTATATATCAATCAACTGCAAGAGAAATTGACAAAACAAGAACTTAT
TTGCCAAAAACTAAACGacgaaaagaaatattataagtTAGAGCTGGTCA
ACCGTGAAGAGAATTTCAACAAAGTCTTCAGTAATTCGCCCAAAGTTGGT
TTCATGAACCCAGTTGAATTATCAAGGAAGAAAAGCTCACGAAAAAGATG
ATGCTGCAGAGAGGTAACATAATGATGATAAATAATCAGATGTTGTCAAA
GAGAAAAGGAAATGTTCATTGTTTTGGAATCAGGTGATACAATTCATTGC
ATTTTAGCATCGACGGATCTAGAAGGTGTTCACGTACTCTAGAAATTCAA
TGTTGGCAATTGCTAACCTGGCAAAACGCCTTTTTAATGTACGTTGAAGG
TAAAATGATTCAAACAATGAACTTGATCCAATTTATCAATATCTTGAATA
TTGAATGATTACCTTCATAAAAAATAGTGCATTTCTCTACAATACAGCGT
GTCCCAAAGAGCGgataaatttttatataaagtaaaattctcataattta
tgccaaattttatgactaAC
Run BLAST on NCBI

transcript from alignment at scaffold_142:484823..487418-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048376 ID=TCONS_00048376|Name=TCONS_00048376|organism=Clytia hemisphaerica|type=transcript|length=2596bp|location=Sequence derived from alignment at scaffold_142:484823..487418- (Clytia hemisphaerica)
GGTGTCGCGAAGAAGAATTAACCGAGGACCACCAGAAAACTGTACAAACA
TTACGTCATAATCATGTGAACGAATTACGTCATCAAAACAATGATTGGAC
GCAAGAAAAGTGTAAATTACAAGAAGAAGTTGATGCGTTGTCCTTTATGT
TGAAGGTTTGTAATGTTTTCTTTGTGTCTGTTATTTTTCGGTAAATTCAC
GGTAAAAAGAAGCAATTTTTATTGTGTTCGCAAATGGAAATTTCTTTAGA
AAAATAAGCGAATCCTTGCAATACCTTATTTTTTAATATTTTTTAAACGG
AACAAATATATAAGCAATAAAGGTTCCTTAGCCTCCCACTAAAAACCCTA
GATTATACCGCCAGAAGGTAGGAACAAAAAAAAAAACGATACTTTGATAC
ATACTTTCAAAGTAAAGGCTAAAAATTTGAAGTTAATTATCTTCTTTTTG
GACCTACCCCGGTGGGGTAGAGGTCCTATAAATTAACCGATGTCCGTCCG
TCCGTCTGTCCGTCCGTTCGTCCGTTCGTCCGTCTGTTACCAGCTTTTCT
CAGGATTGGCTCATTAGTTTTTTCTGATTTTTGGCACAATGATGCAAAAT
GGCAATGCCCAAAATGTGACGGAGCCCGATTTTCGAAAAAAAATATATTT
GGGCAAATTTGGGCCAAAAACTGCCTTAAAATAGGTTTTTTTGGACTTTG
TGCAAAATCCTGTCATTACTTTTTTCTGATTTTTTGTACAAAGATGGAGG
GCAAAATTCTCTAAAGAATGACTGAAGTGGTTTTTCCCGGAAAATTTTTA
TTCGCCTTAAAAGACGGATTTTCGTATTTTGGGGAAATTCCCTTTAACCA
AATAAGAAAATATAGCTTTTCTCAATGTTGACTCATAGTTTCTTTCTGAT
TTTTTGCACAATGATGCAAAATGACAATACCTAAAATGTGACGAAGCCCG
ATTTTCAAAAAACAATTTTTTCCGGCCGAAAATACCGGAAATATGCCGGA
AAACTGTTTTTTTGGCATTTTCTCAAGATTTTATCATTGGTTTTTTTCTG
ATTTTTTGCTCAAAGATGCGTATTAACAATGCCCAAAACATGGCCGAGTT
CGATTTTTGAGAAAAAACNNNGTTTTTTACACAAAAACATTATTGATAAC
AATGCTCACCATCAAGCATGATTCAATTGTCAATAAAACTGATTTTTGCG
ACCAGAACTTTCTATTTATTTTTTCCATACAATCTTTCCCTGTCCCCCAT
CAACAATCAATGATGAATTTATTGCGTTATGCATTTTCGCTAAATGCTAT
ATTTTCTGACTGATATTTTTTCATTTTTCTCCTCGCATTGCTATGTAACT
TTCATCATCAGGTAGGTCCATTCAGTATCTTCTTTTTTTTTCTTAAAGGA
GACTGAGGAGAAGTACAGACAACGCCCTTCAAGAGATGAGGACGTTTTAT
ATATCAATCAACTGCAAGAGAAATTGACAAAACAAGAACTTATTTGCCAA
AAACTAAACGACGAAAAGAAATATTATAAGTTAGAGCTGGTCAACCGTGA
AGAGAATTTCAACAAAGTCTTCAGTAATTCGCCCAAAGTTGGTTTCATGA
ACCCAGTTGAATTATCAAGGGTAAGTTTTTTGTCGTATTTTTTCTTGTAA
AAATCAGTTTAGGAAAGGGGTGCCTTCGGCATGCTTGAAAACGGGGTTAA
AGAGGCCAAACTAGAACAAGAACCAAACTGGAAGCAGCTGAACGGCTCAG
TTATTTATTTTGTTTTAAACAATGGAAGGTGTGATCCTGCAGCTTGAGAA
AGTCTTTTAATTTAAATCAAAAATGTTTTCAACACTTTTACTCTCAATGG
GTTACTTTCGCCTAAACCATTCCAAAATGCTTTAAAATCTGCTACAATTC
GACGGTTGATTGGGATTTTCAACATAAATTTGAGTTTTATCAAGGTGAAA
ATACTGGGACGAGATGGAGTTTTTACAAGCTCTTATTTGATTTGGTTGGT
CGTTAACCAGAAATAAAACAATTTTGTTACTATTTCTAAAGAACGCGTCA
TTATTATTACTTCAAATGACTAATTATTAAAGTATCTTATAAAAACTCCA
TCTCATCTGAAAATACTTAAGTGACTCATATAGTAAAATTTGCTAATTAT
AGCTCATGGTATAGGTATATTATATCCTCCCCAATTTCTCTCTCCATATT
TAGAAGAAAAGCTCACGAAAAAGATGATGCTGCAGAGAGGTAACATAATG
ATGATAAATAATCAGATGTTGTCAAAGAGAAAAGGAAATGTTCATTGTTT
TGGAATCAGGTGATACAATTCATTGCATTTTAGCATCGACGGATCTAGAA
GGTGTTCACGTACTCTAGAAATTCAATGTTGGCAATTGCTAACCTGGCAA
AACGCCTTTTTAATGTACGTTGAAGGTAAAATGATTCAAACAATGAACTT
GATCCAATTTATCAATATCTTGAATATTGAATGATTACCTTCATAAAAAA
TAGTGCATTTCTCTACAATACAGCGTGTCCCAAAGAGCGGATAAATTTTT
ATATAAAGTAAAATTCTCATAATTTATGCCAAATTTTATGACTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030775XLOC_030775Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048376-exon-scaffold_142-1575043694:487264..487418TCONS_00048376-exon-scaffold_142-1575043694:487264..487418Clytia hemisphaericaexon
TCONS_00048376-exon-scaffold_142-1575043694:485799..486020TCONS_00048376-exon-scaffold_142-1575043694:485799..486020Clytia hemisphaericaexon
TCONS_00048376-exon-scaffold_142-1575043694:484823..485215TCONS_00048376-exon-scaffold_142-1575043694:484823..485215Clytia hemisphaericaexon
TCONS_00048376-exon-scaffold_142-1510915933:487264..487418TCONS_00048376-exon-scaffold_142-1510915933:487264..487418Clytia hemisphaericaexon
TCONS_00048376-exon-scaffold_142-1510915933:485799..486020TCONS_00048376-exon-scaffold_142-1510915933:485799..486020Clytia hemisphaericaexon
TCONS_00048376-exon-scaffold_142-1510915933:484823..485215TCONS_00048376-exon-scaffold_142-1510915933:484823..485215Clytia hemisphaericaexon
TCONS_00048376-exon-scaffold_142-1491911889:487264..487418TCONS_00048376-exon-scaffold_142-1491911889:487264..487418Clytia hemisphaericaexon
TCONS_00048376-exon-scaffold_142-1491911889:485799..486020TCONS_00048376-exon-scaffold_142-1491911889:485799..486020Clytia hemisphaericaexon
TCONS_00048376-exon-scaffold_142-1491911889:484823..485215TCONS_00048376-exon-scaffold_142-1491911889:484823..485215Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:484823..487418 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.4888	6.76814	2.4344	1.18988	26.2975	18.8696	9.71699	12.3753	6.30399	6.11149	5.27419	5.54358	1.94458	2.22762	1.11664	2.61338	2.70603	2.82225	2.75625	2.11041	2.60134	3.14253	8.92978	8.2695	11.6143	14.1855	2.51473	2.29723	3.506	5.25898
Blast
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BLAST of TCONS_00048376 vs. Swiss-Prot (Human)
Match: F184A (Protein FAM184A OS=Homo sapiens GN=FAM184A PE=2 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 6.388e-18
Identity = 48/119 (40.34%), Postives = 76/119 (63.87%), Query Frame = 3 
Query:    9 EEELTEDHQKTVQTLRHNHVNELRHQNNDWTQEKCKLQEEVDALSFMLKETEEKYRQRPSRDEDVLYINQLQEKLTKQELICQKLNDEKKYYKLELVNREENFNKVFSNSPKVGFMNPV 365
            E++L +  +K +  +  +H+ E      D+ +    L+E   AL   L+E EEKY  R S+ ED+  I +L+  LT+++ I +KL ++ K+Y+LELVNRE NFNKVF++SP VG +NP+
Sbjct:  926 EQDLNKRLEKELDVMTADHLREKNIMRADFNKTNELLKEINAALQVSLEEMEEKYLMRESKPEDIQMITELKAMLTERDQIIKKLIEDNKFYQLELVNRETNFNKVFNSSPTVGVINPL 1044
The following BLAST results are available for this feature:
BLAST of TCONS_00048376 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
F184A6.388e-1840.34Protein FAM184A OS=Homo sapiens GN=FAM184A PE=2 SV... [more]
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