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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048375 ID=TCONS_00048375|Name=TCONS_00048375|organism=Clytia hemisphaerica|type=transcript|length=1380bp
GTTTAGTCCTATAAATTTGATTCAACATATAAATTATACTCATTTTCAAA
CCAAACTCATCTAGTAAAGACGGAAGGAAGAAAAACAATTAACCAAATTT
TTCAgGGCTGGTACCGATAGAAAATATAATCATGCTTTTCGTCATCTTTG
CCACTTGTTGCCTAGCAACCACAAATGCCAAATCCCTTGTACCTTCATCC
AATGTATGGCCTTCTCTTGAACAACAACCTGGTATTGGATATCGGTATGG
TAGTGTGCAGCCATTATGGATGACGCATGTTGGATTGACCAAAGTTCGCG
GGAATGGCGCTGCCAAGAGTAAAGATATACCAACCGTCTATTGGAGGGTT
GGTGACGACTCTACTAAGCCTAACAATTTGTTCTTCAAAGATTCAATCCC
GCCCTTTTTTCatttccttcaaaaaacaaaaagcgCCATGGACGAGAGGG
ATGAACGACGAATCCCGTTATATATTGACGATGAATCCGATTTTGGCAAT
AATCAAGAGTCGGACAATATCGGCGAATCCGTTTCGGTAAACACCAACCA
AGAAAGAAGATCTGGGCAACATGAAAACCAACAGAAAGTCGATATCTTGC
GCAAGATAATTGAAGAACGTGAATCAAGGGTGGCGGGCGTAAACATGGAT
GAGGCGGACAAGAGAGCTATTCGTACCTATACTTACAGTTCGCATCGTTT
ACGTCAACTTTTGCGAAATTATTTGAAATCATTGAGTAagttaaataaga
acaaaaatgaACCAAGACAAGCGCCGGCTGATAATAATGGAGTAGCTGAG
CAAGATGGTATCTGGGGTCGCTAAAGACTCATTTTCTTAGTTCGAATTTC
ATCAAAGCTTTGCACTGAACTACTGATTTAGACTCTCTGAGATCTCTAAA
AAAAACACATCATTCTAGCTTATGGCCAACACTATATATTGTACATTCTA
TATAAAGACAAAAACGGCCCTTTTCAATCCAtgttacagtggagtctctt
taactcaaacGTTTATTGAACGTCTTCTTAACGTTTATTGAACGTCTTCT
TAACGTTTATTGAAcgtcttcttaactcgaacaagttaaaaatgccttat
aaaccttgctccatatttcgaaatttctcaaacaaatttatgtctTCTTT
TATGCGTGTTCGatttatggagactccactgtatatatTATAAGCCGata
tgcaaaaaatattttagaactATTTAGCGCTGGTAGCTTGTGTTTACTGC
TCTATATTTTTGTCTAGATGTCTTTGTACATactgaacattttctttctc
aaacTTGAAATATAAAGATATAGTCATTCAAATGATGCTGTTTTCCATCT
CCACGGAGCACTCATCTACGTACGTATcag Run BLAST on NCBI transcript from alignment at scaffold_142:479295..481412- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048375 ID=TCONS_00048375|Name=TCONS_00048375|organism=Clytia hemisphaerica|type=transcript|length=2118bp|location=Sequence derived from alignment at scaffold_142:479295..481412- (Clytia hemisphaerica)
GTTTAGTCCTATAAATTTGATTCAACATATAAATTATACTCATTTTCAAA
CCAAACTCATCTAGTAAAGACGGAAGGAAGAAAAACAATTAACCAAATTT
TTCAGGTAATATTTATTTTTCATTGGATTTTCATTTCAAAGATGATTCCC
TTTAAACGAATCTTTTATTATTATTATTTGGAAAAAAACCCTTGCGGCGA
AACTTAAAAAGGTATTTGAGATATTTAAAAAACATACCGTCTGTCAATTG
TAAATTCTACATCATATTAAGAAAGGTTTACTCTCCCGGTAATATATTCT
TTTTGAAATTTTACCAAAAATCACTGTAGTTCTTTTTGAAATTTTACCAA
AAATCACTGTAGGGTGTTTGTTTTAGAAGTTTTCAAAATTGTCATGTTTT
GTACCCGCCCTTTCACCGCGAAAATGTAGTGTTTCAGAAAATTCCAAAAA
AATTCTTAAGAAAAATCTTCAAAAAGAATTCCAAATAAAATTCCAAAAAA
CGAAAATTCTTTTAAGAGTATCCATTCTTTGTTCAAACAAGGCACTGTAC
TGGTTGTTACAGAGTACAAGCGCATTTTGTGAAAAGTCTGAAAATTTGCG
AAAATCTATAAGTGCATTTAAAAAATATCTTTGAAGAGGTCAAATATTAT
TTTTTACACACTTTAATTTAATGAAATGTTGCTTCNGAAAAGTCTGAAAA
TTTGCATTTAAAAAATATCTTTGAAGAGGTAAAATATTATTTTTTACACA
CTTTAATTTAATGAAATGTTTCTTCGTAATATTTGTAGCCCCTGTATGGT
ACAAAATCAAAATCTTAAATTTGTTTTAAATTTGATTTTATAGGGCTGGT
ACCGATAGAAAATATAATCATGCTTTTCGTCATCTTTGCCACTTGTTGCC
TAGCAACCACAAATGCCAAATCCCTTGTACCTTCATCCAATGTATGGCCT
TCTCTTGAACAACAACCTGGTATTGGATATCGGTATGGTAGTGTGCAGCC
ATTATGGATGACGCATGTTGGATTGACCAAAGTTCGCGGGAATGGCGCTG
CCAAGAGTAAAGATATACCAACCGTCTATTGGAGGGTTGGTGACGACTCT
ACTAAGCCTAACAATTTGTTCTTCAAAGATTCAATCCCGCCCTTTTTTCA
TTTCCTTCAAAAAACAAAAAGCGCCATGGACGAGAGGGATGAACGACGAA
TCCCGTTATATATTGACGATGAATCCGATTTTGGCAATAATCAAGAGTCG
GACAATATCGGCGAATCCGTTTCGGTAAACACCAACCAAGAAAGAAGATC
TGGGCAACATGAAAACCAACAGAAAGTCGATATCTTGCGCAAGATAATTG
AAGAACGTGAATCAAGGGTGGCGGGCGTAAACATGGATGAGGCGGACAAG
AGAGCTATTCGTACCTATACTTACAGTTCGCATCGTTTACGTCAACTTTT
GCGAAATTATTTGAAATCATTGAGTAAGTTAAATAAGAACAAAAATGAAC
CAAGACAAGCGCCGGCTGATAATAATGGAGTAGCTGAGCAAGATGGTATC
TGGGGTCGCTAAAGACTCATTTTCTTAGTTCGAATTTCATCAAAGCTTTG
CACTGAACTACTGATTTAGACTCTCTGAGATCTCTAAAAAAAACACATCA
TTCTAGCTTATGGCCAACACTATATATTGTACATTCTATATAAAGACAAA
AACGGCCCTTTTCAATCCATGTTACAGTGGAGTCTCTTTAACTCAAACGT
TTATTGAACGTCTTCTTAACGTTTATTGAACGTCTTCTTAACGTTTATTG
AACGTCTTCTTAACTCGAACAAGTTAAAAATGCCTTATAAACCTTGCTCC
ATATTTCGAAATTTCTCAAACAAATTTATGTCTTCTTTTATGCGTGTTCG
ATTTATGGAGACTCCACTGTATATATTATAAGCCGATATGCAAAAAATAT
TTTAGAACTATTTAGCGCTGGTAGCTTGTGTTTACTGCTCTATATTTTTG
TCTAGATGTCTTTGTACATACTGAACATTTTCTTTCTCAAACTTGAAATA
TAAAGATATAGTCATTCAAATGATGCTGTTTTCCATCTCCACGGAGCACT
CATCTACGTACGTATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048375-exon-scaffold_142-1575043694:481308..481412 | TCONS_00048375-exon-scaffold_142-1575043694:481308..481412 | Clytia hemisphaerica | exon |
| TCONS_00048375-exon-scaffold_142-1575043694:479295..480569 | TCONS_00048375-exon-scaffold_142-1575043694:479295..480569 | Clytia hemisphaerica | exon |
| TCONS_00048375-exon-scaffold_142-1510915933:481308..481412 | TCONS_00048375-exon-scaffold_142-1510915933:481308..481412 | Clytia hemisphaerica | exon |
| TCONS_00048375-exon-scaffold_142-1510915933:479295..480569 | TCONS_00048375-exon-scaffold_142-1510915933:479295..480569 | Clytia hemisphaerica | exon |
| TCONS_00048375-exon-scaffold_142-1491911889:481308..481412 | TCONS_00048375-exon-scaffold_142-1491911889:481308..481412 | Clytia hemisphaerica | exon |
| TCONS_00048375-exon-scaffold_142-1491911889:479295..480569 | TCONS_00048375-exon-scaffold_142-1491911889:479295..480569 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:479295..481412 - |
Blast
The following BLAST results are available for this feature:
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