TCONS_00048359 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048359
Unique NameTCONS_00048359
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length504

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048359 ID=TCONS_00048359|Name=TCONS_00048359|organism=Clytia hemisphaerica|type=transcript|length=504bp
AAAAACAATTCCAAAATTCGCAGATGgcaacaaaaaaatcagaaaacagc
CAAACTTCAAGACAAGTGTCAGGAATGGAAAAGGAAAGCTCTTAAAACTA
GTCAAAACCATGCCAATATTTGTCAATTTTACACCATACAAAGTAAGCGT
TGACGTTTTTAATTAACTTTAATGGACTAATTTttgtggggattaaattt
ggcaaattctGACGAAATTCgctgagaaaataaaaaatccgcACCAAAAT
CGGATCACAGAATGGAATCTGCGCCAAAACTGGATCACAGAAGATGGCAA
GCTTACGTTCTGCATTTCTGATTCGCCCATTCAATTTTGTCCAGTATACT
GGATAGTATATGACGTCAGTTGAGCTATGATAAATGAGTTGAAAAGAACG
CTAactagcaactccagaagatttttcaagttttaatttttttttcaaaa
tctatcctatcttgtagagctttgaaaaagaaagaaaatgaggggtcata
ggcc
Run BLAST on NCBI

transcript from alignment at scaffold_142:298573..299076-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048359 ID=TCONS_00048359|Name=TCONS_00048359|organism=Clytia hemisphaerica|type=transcript|length=504bp|location=Sequence derived from alignment at scaffold_142:298573..299076- (Clytia hemisphaerica)
AAAAACAATTCCAAAATTCGCAGATGGCAACAAAAAAATCAGAAAACAGC
CAAACTTCAAGACAAGTGTCAGGAATGGAAAAGGAAAGCTCTTAAAACTA
GTCAAAACCATGCCAATATTTGTCAATTTTACACCATACAAAGTAAGCGT
TGACGTTTTTAATTAACTTTAATGGACTAATTTTTGTGGGGATTAAATTT
GGCAAATTCTGACGAAATTCGCTGAGAAAATAAAAAATCCGCACCAAAAT
CGGATCACAGAATGGAATCTGCGCCAAAACTGGATCACAGAAGATGGCAA
GCTTACGTTCTGCATTTCTGATTCGCCCATTCAATTTTGTCCAGTATACT
GGATAGTATATGACGTCAGTTGAGCTATGATAAATGAGTTGAAAAGAACG
CTAACTAGCAACTCCAGAAGATTTTTCAAGTTTTAATTTTTTTTTCAAAA
TCTATCCTATCTTGTAGAGCTTTGAAAAAGAAAGAAAATGAGGGGTCATA
GGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030768XLOC_030768Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048359-exon-scaffold_142-1575043694:298573..299076TCONS_00048359-exon-scaffold_142-1575043694:298573..299076Clytia hemisphaericaexon
TCONS_00048359-exon-scaffold_142-1510915933:298573..299076TCONS_00048359-exon-scaffold_142-1510915933:298573..299076Clytia hemisphaericaexon
TCONS_00048359-exon-scaffold_142-1491911889:298573..299076TCONS_00048359-exon-scaffold_142-1491911889:298573..299076Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:298573..299076 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.277767	0.682073	2.63289	3.38528	2.49991	3.63738	3.85065	3.47752	2.73098	2.3364	2.37077	2.86822	0.549879	0.770512	0.637477	0.279102	0.778849	0.683561	0.129421	0.522046	0.138886	0.132433	4.44666	5.2577	0	0.539643	0.135825	0.145128
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048359 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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