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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048345 ID=TCONS_00048345|Name=TCONS_00048345|organism=Clytia hemisphaerica|type=transcript|length=2338bp
TCAACTCTACCCCGGATgacaaaaacattgaaagtttctgCTATTTTACA
TAACATTCGTCGTAGTCAAAACACTGACTTTTTCTTCATACACTTGTTCA
AAAACAAGGTTTAACGTGTCAAAGGGTGGAAGTAAACGTCTTGCACAGTA
CTATTTGAAAGAGGATGTTTTATTTTGCAATTGGATTACTATTTTTGGGG
TACGGTCAAGGACAGCCTCCTCCAAGTGTTAGCTTGCTGAAGGGTATTTG
TATTTTACAAGAATCCAAAACGATCGCCGGGACAATTCACCTCTCAGAAC
AACctggtcaaaatcttaaactgACTGGTCAAATTAAGGGTATTTCCGCT
GGTTTCCATGGTTTCCATATTCACCATTATGGAGATTTGACGAATGGTTG
TAAAAGTACCGGAGGTCATTTCAATCCCTCTGGTGTTTTCCATGGTGGGA
AATTCGCCCAAAACCGCCACGTTGGAGATCTGGGTAACATTTTTGTGAAC
CAATCAGAAGTTTACGATCTTGACATGACTGATGGTTTAGCCAAGCTATC
TGGAAAGCACAGTGTTTACGGCCGCGCGATTGTCATCCATGCAGGGAGAG
ACGACAATGGGAGAGGTGGGAATGAGGGAAGTTTGAAGACAGGTAATGCA
GGTGGACGATTGGCGTGTTGCATCATCGCGCATGCAAagtgaatgataaa
ttttgtaaagcttaaaaattgacattattttctttttatgaatGGCAAAA
TTAGGAACACTAGGCTAGGCATCAAGGCATTTAGAAGAAACTTGAACAAA
TGAAGACCAATCTACAGGTCTTGTATAAGTTTCACACTTTCATATTGTAA
AAAGTAGGTCATGTAAAACTTCATGTGTAATACTTTTGATAGCACCCATT
TTATGTGTtgagaaatataaaaaagaaatatattttcgaCATATCTTAAA
TTGACCGACTTTTACCTCTCCCAAATTTGCTAATATAGTGTTTTATATCA
ATgaactgtttaaaaaaaaaagaaaaacgaagaaTACATATCTATGTGAT
TTCGGATTAAAAACCTTCATTCCAATGTTAAACTCCAAAATGGGGAGACA
ATTGACATTTATATGCCTTTTCGCAATTTTTCTTGCATCGTTTGGAGAAT
ATGTTCTTGGAGAAGAAATCTCTTGTGAGAAATGCAAACACCTTGCACAA
AAATATCGTAACTGTATCACAAGTAATTACGATGGAAGAGAATTTCCAAC
AGAGCTTATGGCATTAATCGAAAAGCCTTGGAAATGTGACCCGAACACTA
AAGTAAGGCTTAACTGCAAAGTCCAATGTCAAGATTTCCTTAAATGCTAT
TCAAACCTGaatgaaaaatgttcttatgcGAATGAAAGCGGTACTCCAAC
ACTAAGTCCAAAAGTCGAATATTGTAAGACGAGTTCAATCAAAAAATGTG
AAGAAACCATGCCTGAGAATTCTACCATTGAAAAATTCAGCTTATGCGTG
GTTATGGGACACATTCGATTCTGTTTGCAGAAGAAAGCACATCAACGAAC
TGCTGGGTCATTTTGTGAGGACGTTTACCAAAAAGCCGAAGTATGTTTTG
GTGGTTCTTGTATTGACATTGAATTCCCTGTAACAGTTTGTACATAATCG
TAAAGTTAAtatcaggcccggcggaagcggggagactggggaagTCTTCC
ctcttttgagcaaatgagattttttctcaaatggTTCCAAGCACTAAATT
TTATCCTATTTGGGCCTTTAGCCTCCCCACACTTTAACGGTCGTTCCGCT
GGGCCTGAATACTGCTCATGTATTGAGTTTATTCACCTTGTAAGATTGAA
ACGTTTTATTTAAACTTTCTAACAAATGTTCGGAAACGGttgtaattttt
taataattttaaacatacagtagagtctctctaattcgaacctctataaa
tTGAATTCTTCTCAACTTggacaagttttctcgtcccttcagcccagcta
acaatgccttataaaccttacccCATAACTCGAAGTTTCCTTacctcgaa
caaatttgtgcgctccccgtgcgtgttcgactTACAGAGACTCAACTGTA
CTACAGTAAATTTGTGTAAATTTCTTTTATTATCTACAATCATGATCAAA
ATCTATTgggaatttagcttatttctttgtttttcgaaatttggagttcg
ggcgagaaagtcgattttgggccatctcttaaatgtaatcggatatttca
aatTGGCACGGATTTATAGATTTTCAGGCTATCTTGTGAGCCATATTGgc
ccattttttaacttttggatcctaaGATTCTCTGGTTC Run BLAST on NCBI protein sequence of TCONS_00048345-protein >TCONS_00048345-protein ID=TCONS_00048345-protein|Name=TCONS_00048345-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MLNSKMGRQLTFICLFAIFLASFGEYVLGEEISCEKCKHLAQKYRNCITS
NYDGREFPTELMALIEKPWKCDPNTKVRLNCKVQCQDFLKCYSNLNEKCS
YANESGTPTLSPKVEYCKTSSIKKCEETMPENSTIEKFSLCVVMGHIRFC
LQKKAHQRTAGSFCEDVYQKAEVCFGGSCIDIEFPVTVCT Run BLAST on NCBI transcript from alignment at scaffold_142:97399..100487- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048345 ID=TCONS_00048345|Name=TCONS_00048345|organism=Clytia hemisphaerica|type=transcript|length=3089bp|location=Sequence derived from alignment at scaffold_142:97399..100487- (Clytia hemisphaerica)
TCAACTCTACCCCGGATGACAAAAACATTGAAAGTTTCTGCTATTTTACA
TAACATTCGTCGTAGTCAAAACACTGACTTTTTCTTCATACACTTGTTCA
AAAACAAGGTTTAACGTGTCAAAGGGTGGAAGTAAACGTCTTGCACAGTA
CTATTTGAAAGAGGATGTTTTATTTTGCAATTGGATTACTATTTTTGGGG
TACGGTCAAGGACAGCCTCCTCCAAGTATGCTTCTTTTTTTTTACTCTCG
ACTCCATTCGGTTAGTTTAGAAATTCAGATTAAATTCTCATGACAAGTTA
AGACTTACGCAAAATTGTCAACGTTATTATATTGATTCCCCTGAGAGGTT
TCTGTATGATAACAACACTGGTTGCACCATTGAGTTTTAACCCCGAAAAG
CTAGAGTAGAATCTCTAACCTTTCCCAGACAAGAAAAAATTGAAGTCACT
CATTTCCCATCCAGAACGTAATCATGACAACGGATTGTATCTAGCGGCTC
CTTTGTTTTTGAGGACTGCATTTTTTTAAATCTAACGATAGATTTTCGTT
TCAACTCAACGTTTGTGTAAAAACCACGCGCGGAAGTTCTGGATGAGTAA
TAAGTAGCTTAATTTCCCATCCAGGAGTCTCGGGTCTGGCCCTTCGGCCT
TGGAAGTCAATGGCGTGCATGCTAAGAATAGACTTTAGAATTTTTCTCAA
CAAGAGCTCGAATTTATGGATAAGAGTTCGTTGGATTAGGTTAACAGTCT
TTTCATCAGGTCCTAAACATTTCGTATAAGTTGTCTTCGAATAATCCTTA
GTTAAATCGAGGTATCCTCATCGTATCGTATTCAAGCCTAAGTATATGTT
TTCTTGTTTCAGTTCTCCAAATCTAAACTTTAATGAAATAATATATACTA
TTTTTACAGGTGTTAGCTTGCTGAAGGGTATTTGTATTTTACAAGAATCC
AAAACGATCGCCGGGACAATTCACCTCTCAGAACAACCTGGTCAAAATCT
TAAACTGACTGGTCAAATTAAGGGTATTTCCGCTGGTTTCCATGGTTTCC
ATATTCACCATTATGGAGATTTGACGAATGGTTGTAAAAGTACCGGAGGT
CATTTCAATCCTTCTGGCGTTTTCCACGGTGGGAAATTTNACAAATGGTT
GTAAAAGTACCGGAGGTCATTTCAATCCCTCTGGTGTTTTCCATGGTGGG
AAATTCGCCCAAAACCGCCACGTTGGAGATCTGGGTAACATTTTTGTGAA
CCAATCAGAAGTTTACGATCTTGACATGACTGATGGTTTAGCCAAGCTAT
CTGGAAAGCACAGTGTTTACGGCCGCGCGATTGTCATCCATGCAGGGAGA
GACGACAATGGGAGAGGTGGGAATGAGGGAAGTTTGAAGACAGGTAATGC
AGGTGGACGATTGGCGTGTTGCATCATCGCGCATGCAAAGTGAATGATAA
ATTTTGTAAAGCTTAAAAATTGACATTATTTTCTTTTTATGAATGGCAAA
ATTAGGAACACTAGGCTAGGCATCAAGGCATTTAGAAGAAACTTGAACAA
ATGAAGACCAATCTACAGGTCTTGTATAAGTTTCACACTTTCATATTGTA
AAAAGTAGGTCATGTAAAACTTCATGTGTAATACTTTTGATAGCACCCAT
TTTATGTGTTGAGAAATATAAAAAAGAAATATATTTTCGACATATCTTAA
ATTGACCGACTTTTACCTCTCCCAAATTTGCTAATATAGTGTTTTATATC
AATGAACTGTTTAAAAAAAAAAGAAAAACGAAGAATACATATCTATGTGA
TTTCGGATTAAAAACCTTCATTCCAATGTTAAACTCCAAAATGGGGAGAC
AATTGACATTTATATGCCTTTTCGCAATTTTTCTTGCATCGTTTGGAGAA
TATGTTCTTGGAGAAGAAATCTCTTGTGAGAAATGCAAACACCTTGCACA
AAAATATCGTAACTGTATCACAAGTAATTACGATGGAAGAGAATTTCCAA
CAGAGCTTATGGCATTAATCGAAAAGCCTTGGAAATGTGACCCGAACACT
AAAGTAAGGCTTAACTGCAAAGTCCAATGTCAAGATTTCCTTAAATGCTA
TTCAAACCTGAATGAAAAATGTTCTTATGCGAATGAAAGCGGTACTCCAA
CACTAAGTCCAAAAGTCGAATATTGTAAGACGAGTTCAATCAAAAAATGT
GAAGAAACCATGCCTGAGAATTCTACCATTGAAAAATTCAGCTTATGCGT
GGTTATGGGACACATTCGATTCTGTTTGCAGAAGAAAGCACATCAACGAA
CTGCTGGGTCATTTTGTGAGGACGTTTACCAAAAAGCCGAAGTATGTTTT
GGTGGTTCTTGTATTGACATTGAATTCCCTGTAACAGTTTGTACATAATC
GTAAAGTTAATATCAGGCCCGGCGGAAGCGGGGAGACTGGGGAAGTCTTC
CCTCTTTTGAGCAAATGAGATTTTTTCTCAAATGGTTCCAAGCACTAAAT
TTTATCCTATTTGGGCCTTTAGCCTCCCCACACTTTAACGGTCGTTCCGC
TGGGCCTGAATACTGCTCATGTATTGAGTTTATTCACCTTGTAAGATTGA
AACGTTTTATTTAAACTTTCTAACAAATGTTCGGAAACGGTTGTAATTTT
TTAATAATTTTAAACATACAGTAGAGTCTCTCTAATTCGAACCTCTATAA
ATTGAATTCTTCTCAACTTGGACAAGTTTTCTCGTCCCTTCAGCCCAGCT
AACAATGCCTTATAAACCTTACCCCATAACTCGAAGTTTCCTTACCTCGA
ACAAATTTGTGCGCTCCCCGTGCGTGTTCGACTTACAGAGACTCAACTGT
ACTACAGTAAATTTGTGTAAATTTCTTTTATTATCTACAATCATGATCAA
AATCTATTGGGAATTTAGCTTATTTCTTTGTTTTTCGAAATTTGGAGTTC
GGGCGAGAAAGTCGATTTTGGGCCATCTCTTAAATGTAATCGGATATTTC
AAATTGGCACGGATTTATAGATTTTCAGGCTATCTTGTGAGCCATATTGG
CCCATTTTTTAACTTTTGGATCCTAAGATTCTCTGGTTC Coding sequence (CDS) from alignment at scaffold_142:97399..100487- >TCONS_00048345 ID=TCONS_00048345|Name=TCONS_00048345|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at scaffold_142:97399..100487- (Clytia hemisphaerica)
ATGTTAAACTCCAAAATGGGGAGACAATTGACATTTATATGCCTTTTCGC
AATTTTTCTTGCATCGTTTGGAGAATATGTTCTTGGAGAAGAAATCTCTT
GTGAGAAATGCAAACACCTTGCACAAAAATATCGTAACTGTATCACAAGT
AATTACGATGGAAGAGAATTTCCAACAGAGCTTATGGCATTAATCGAAAA
GCCTTGGAAATGTGACCCGAACACTAAAGTAAGGCTTAACTGCAAAGTCC
AATGTCAAGATTTCCTTAAATGCTATTCAAACCTGAATGAAAAATGTTCT
TATGCGAATGAAAGCGGTACTCCAACACTAAGTCCAAAAGTCGAATATTG
TAAGACGAGTTCAATCAAAAAATGTGAAGAAACCATGCCTGAGAATTCTA
CCATTGAAAAATTCAGCTTATGCGTGGTTATGGGACACATTCGATTCTGT
TTGCAGAAGAAAGCACATCAACGAACTGCTGGGTCATTTTGTGAGGACGT
TTACCAAAAAGCCGAAGTATGTTTTGGTGGTTCTTGTATTGACATTGAAT
TCCCTGTAACAGTTTGTACATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048345-exon-scaffold_142-1575043694:100263..100487 | TCONS_00048345-exon-scaffold_142-1575043694:100263..100487 | Clytia hemisphaerica | exon |
| TCONS_00048345-exon-scaffold_142-1575043694:99390..99578 | TCONS_00048345-exon-scaffold_142-1575043694:99390..99578 | Clytia hemisphaerica | exon |
| TCONS_00048345-exon-scaffold_142-1575043694:97399..99322 | TCONS_00048345-exon-scaffold_142-1575043694:97399..99322 | Clytia hemisphaerica | exon |
| TCONS_00048345-exon-scaffold_142-1510915933:100263..100487 | TCONS_00048345-exon-scaffold_142-1510915933:100263..100487 | Clytia hemisphaerica | exon |
| TCONS_00048345-exon-scaffold_142-1510915933:99390..99578 | TCONS_00048345-exon-scaffold_142-1510915933:99390..99578 | Clytia hemisphaerica | exon |
| TCONS_00048345-exon-scaffold_142-1510915933:97399..99322 | TCONS_00048345-exon-scaffold_142-1510915933:97399..99322 | Clytia hemisphaerica | exon |
| TCONS_00048345-exon-scaffold_142-1491911889:100263..100487 | TCONS_00048345-exon-scaffold_142-1491911889:100263..100487 | Clytia hemisphaerica | exon |
| TCONS_00048345-exon-scaffold_142-1491911889:99390..99578 | TCONS_00048345-exon-scaffold_142-1491911889:99390..99578 | Clytia hemisphaerica | exon |
| TCONS_00048345-exon-scaffold_142-1491911889:97399..99322 | TCONS_00048345-exon-scaffold_142-1491911889:97399..99322 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:97399..100487 - |
Blast
BLAST of TCONS_00048345 vs. Swiss-Prot (Human)
Match: SODC (Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2) HSP 1 Score: 126.331 bits (316), Expect = 6.177e-33 Identity = 69/151 (45.70%), Postives = 95/151 (62.91%), Query Frame = 3
Query: 240 KGICILQESKTIAGTIHLSEQPGQN-LKLTGQIKGISAGFHGFHIHHYGDLTNGCKSTGGHFNPSGVFHGGKFAQNRHVGDLGNIFVNQSEVYDLDMTDGLAKLSGKHSVYGRAIVIHAXXXXXXXXXXEGSLKTGNAGGRLACCIIAHAK 689
K +C+L+ + G I+ ++ +K+ G IKG++ G HGFH+H +GD T GC S G HFNP HGG + RHVGDLGN+ ++ V D+ + D + LSG H + GR +V+H DD G+GGNE S KTGNAG RLAC +I A+
Sbjct: 4 KAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ 154
The following BLAST results are available for this feature:
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