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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048340 ID=TCONS_00048340|Name=TCONS_00048340|organism=Clytia hemisphaerica|type=transcript|length=2783bpRun BLAST on NCBI transcript from alignment at scaffold_142:62935..72942- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048340 ID=TCONS_00048340|Name=TCONS_00048340|organism=Clytia hemisphaerica|type=transcript|length=10008bp|location=Sequence derived from alignment at scaffold_142:62935..72942- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00048340 vs. Swiss-Prot (Human)
Match: SERC3 (Serine incorporator 3 OS=Homo sapiens GN=SERINC3 PE=2 SV=2) HSP 1 Score: 174.096 bits (440), Expect = 3.514e-46 Identity = 124/405 (30.62%), Postives = 189/405 (46.67%), Query Frame = -3
Query: 1084 PKIRSSIATRMRYVGALFVVTIVSMIL-----------LSSFCWRILSRTVCPKIGYKYCEFIHGPAPVYRXXXXXXXXXXXXXXXXINVQSSKSNRAIIHNKFWFTKMLLLASIVIGYLFVPRSYYTGEVWHFFGLNAAFGYIVLQFILLLDAIHTTNTNVINWIDDIENRDSARYWYLLLWLPTITMYAFSIFIVVNFYKSYSSQSDCVSNLFFITFHVYMCLSATFISIHPVIQAARPKSGMLQSSVVCAYSSYTLWMTLTNEPDEVCNP---------TKDFLYPADPIQ------------NLQXXXXXXXXXXXXXXXXXXXIEQPQYGKVRKKT---------GPVVTSSGTERIENRFEMTYNDEEKGVEYNYSFFAFTLALGSLYIMMSITNWYRP 2175
P ++S TR+ Y L + T+VS I+ + FC K C+ + G VYRI F FF + + V++SK RA +HN FWF K+ L I++G ++P Y++ VW G+ A +I++Q +LL+D H+ N + W++ +E + R WY L T Y SI V Y Y+ C N FFI+ ++ +C+ A+ ISIHP IQ +P+SG+LQSS++ Y+ Y W ++NEPD CNP T L P + +L F + I +V K T G TS ++ + + ++E++GV+Y+YS F L L SLYIMM++T+WY P
Sbjct: 30 PNSKNSTVTRLIYAFILLLSTVVSYIMQRKEMETYLKKIPGFCEGGFKIHEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVKTSKDLRAAVHNGFWFFKIAALIGIMVGSFYIPGGYFS-SVWFVVGMIGAALFILIQLVLLVDFAHSWNES---WVNRMEEGN-PRLWYAALLSFTSAFYILSIICVGLLYTYYTKPDGCTENKFFISINLILCVVASIISIHPKIQEHQPRSGLLQSSLITLYTMYLTWSAMSNEPDRSCNPNLMSFITRITAPTLAPGNSTAVVPTPTPPSKSGSLLDSDNFIGLFVFVLCLLYSSIRTSTNSQVDKLTLSGSDSVILGDTTTSGASDEEDGQPRRAVDNEKEGVQYSYSLFHLMLCLASLYIMMTLTSWYSP 429 The following BLAST results are available for this feature:
BLAST of TCONS_00048340 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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