Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048333 ID=TCONS_00048333|Name=TCONS_00048333|organism=Clytia hemisphaerica|type=transcript|length=1053bpRun BLAST on NCBI transcript from alignment at scaffold_142:971161..981371+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048333 ID=TCONS_00048333|Name=TCONS_00048333|organism=Clytia hemisphaerica|type=transcript|length=10211bp|location=Sequence derived from alignment at scaffold_142:971161..981371+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00048333 vs. Swiss-Prot (Human)
Match: KS6B1 (Ribosomal protein S6 kinase beta-1 OS=Homo sapiens GN=RPS6KB1 PE=1 SV=2) HSP 1 Score: 328.946 bits (842), Expect = 1.020e-107 Identity = 176/236 (74.58%), Postives = 199/236 (84.32%), Query Frame = 1 Query: 349 EKVPLCQETVN-PKEKLGPSDFDXXXXXXXXXXXXXXXXRKRTGRDADKIFAMKVLKKATIVRNQKDTAHTKAERNILEAIKFPFIVDLLYAFQTGKKLYLILEYLPGGELFMHLEREGVFLEDTASFYLAEITLALEHLHSEGIIYRDLKPENILLDLKGHIKLTDFGLCKESIFHADRTHTFCGTIEYMAPEVLTRSGHGKAVDWWSLGTLMFDMLTGAPPFCSENRKKTQEKV 1053 EK + + +VN EK+ P F+LL+VLGKGGYGKVF VRK TG + KIFAMKVLKKA IVRN KDTAHTKAERNILE +K PFIVDL+YAFQTG KLYLILEYL GGELFM LEREG+F+EDTA FYLAEI++AL HLH +GIIYRDLKPENI+L+ +GH+KLTDFGLCKESI THTFCGTIEYMAPE+L RSGH +AVDWWSLG LM+DMLTGAPPF ENRKKT +K+ Sbjct: 70 EKFEISETSVNRGPEKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKI 305 The following BLAST results are available for this feature:
BLAST of TCONS_00048333 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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