TCONS_00048333 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048333
Unique NameTCONS_00048333
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1053

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048333 ID=TCONS_00048333|Name=TCONS_00048333|organism=Clytia hemisphaerica|type=transcript|length=1053bp
AGCTGGAATACAAAGTTTATTCATTTGACCAAGGTCACCGGCGTTTGGCT
CGAAGCAAGGAAATTTTCACACCACGATCGATCCAGAGCAAAgcacaagt
aaaaaaaaaagaaatgacctaatttgtaatttgtaaaaattataagtttt
aaattttaactGCCAATAGTTCACAATACAAATGTAAATTTTAAGGAATT
TATAGTAATGGCCACtggtatttttcaaattgaaggaGATTTCCACAAAG
ATGGAAGCGATGAAGATGATTATGAAATTTCAGATGACattcaAGAAATG
GAGGAGATGGATCATGATCACATGATTGAAGCACTTGGTGATGATGTAGA
GAAAGTTCCACTCTGTCAAGAAACAGTCAACCCCAAAGAAAAATTGGGAC
CGTCAGATTTTGACCTTTTGAAGGTACTTGGGAAAGGTGGATATGGCAAG
gtatTCCTAGTACGCAAAAGGACAGGTCGGGATGCTGACAAAATATTTGC
AATGAAAGTCTTGAAAAAAGCAACAATTGTTCGCAATCAAAAAGACACTG
CACACACCAAAGCTGAACGGAATATATTAGAAGCAATTAAgTTCCCTTTC
ATTGTTGATCTATTATACGCATTTCAAACTGGAAAGAAACTATATTTGAT
ATTGGAGTATTTGCCAGGTGGTGAATTGTTCATGCATTTAGAGAGGGAAG
GTGTTTTCTTAGAAGATACAGCCAGTTTTTACTTAGCAGAAATTACTTTG
GCATTGGAGCATTTACATAGTGAAGGCATTATTTATAGGGATTTAAAACC
AGAGAATATTTTATTGGACCTCAAAGGTCACATCAAACTTACTGATTTTG
GTCTGTGTAAAGAATCCATTTTCCATGCAGACAGAACGCACACCTTTTGT
GGAACCATTGAGTATATggCACCTGAAGTCTTGACACGTAGTGGACATGG
CAAAGCTGTGGATTGGTGGAGCTTGGGAACCCTCATGTTTGATATGTTAA
CAGGAGCAcctccattttgttcagaaaatcgaaaaaagacccaggaaaag
gta
Run BLAST on NCBI

transcript from alignment at scaffold_142:971161..981371+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048333 ID=TCONS_00048333|Name=TCONS_00048333|organism=Clytia hemisphaerica|type=transcript|length=10211bp|location=Sequence derived from alignment at scaffold_142:971161..981371+ (Clytia hemisphaerica)
AGCTGGAATACAAAGTTTATTCATTTGACCAAGGTCACCGGCGTTTGGCT CGAAGCAAGGAAATTTTCACACCACGATCGATCCAGAGCAAAgcacaagt aaaaaaaaaagaaatgacctaatttgtaatttgtaaaaattataagtttt aaattttaactGCCAATAGTTCACAATACAAATGTAAATTTTAAGGAATT TATAGTAATGGCCACtggtatttttcaaattgaaggaGATTTCCACAAAG ATGGAAGCGATGAAGATGATTATGAAATTTCAGATGACGTGAGTTGAGTT TGTTTgctgtttattttatttaagaGCATTAAAACAAATACCTTCATTTT GCAtagattgggccattccagaaaaaaaaacattatcccCTAATGGAcaa catcaatttttaaaataaattttggcacagaattccaggcaaactttagA GTGACGAAAGTAATATCGAAATTCTATCTTAATAActttgcattaaagta ttggaattccacGAATTTTTTAGGTTTTACAGTAACAGAATTGCACAGTT TTtataggtattttgtaaatttgttacagAAATTCcagactttcttgaaa gcaatttgctacgggCTACGGGCAATGGCATGGGGATTttcaggaccctg ccgacgcaccggactgtccggtgtatttgtccggtggcaaaaagtatcct ttcgctacaccggacgcaataagtctggTGTCAGTNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAGtctg gtgtcagtccggtgttgcatacagggaattttggacgccggacatttatg aaacaaaaaattaagaaacaccggacccACCGGACTGGCCAtttccggtg ttttgattgtccggtgggaaaaatatccttctccgacatcggacatccga cttccttaagttcggtgtagaaattgtccggtggtaaaaaaaattctcat tttacaccggcctttcgcgtgtccggtgttcgttaagtccggtgcgtcgg cagggtcctggaTTTTCATGTCgtacagggctgcaaataaatatttttag tcaatcggacatcatgtccgacagaaatgaaatcctgtcggtcaaactca aaatcctgtcggtcattcagtgtatatttttccagacccgatcaatcgaa cttgtcgaaccaatcgaacaatcgaattACTCGAACTCCATCGGACCATT aaagttcaattaaaaaaattaatcgaactctaagattttttaaaagattg tgagtgttcgattaagttcgatcaatgggtttcggttcgatcagttcNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNaccgtatattagcttcttttcaaagccaaattcggaatgtaa atcaggaaattacttccgataacggattacacacttttcctgtatcctta tAGCGCCAGAGGCGgggtttgttggggcgtagtattccaccactcggccg cgcgcgaaatcgcaacagagggggctacggactttattccggatTAGACA AATATCTGGGTACAATAAACGTCgagctgttaagtccgggagctgtcgaa atggcaatcacgtgccaggacaaagtttttgcaagcgagggaagatatat gaggatttaatattatcgaactaatcgaactttttactgaccgaactaat cgaactgctattgcttcaaaaattgtgagtgttcgattaggttcgattaa tttttttaatcgaactttaatcgttcgatggagttcaattagttcgattg ttcgattgatcgggtctggattTTTATATAGTTACGGAGAaagtaggaaa aataaaagttacctttgaacagtttgttactgtatataacagagaaattg attcgataaaagtgatcttagaaacacccttggaagttaagaagaaagca agttgataaaagttaacttagaaacactcttgaaagttatgaagtaagca agttgatgaaaatggtcttaaaaaaactcttgaaagttatgaagaaagcg agtcgataaaagtttaactttgaaacacccttgaaagttacgaagaaagc aaattgatgaaagtgatcttagaaacaaagaagtttacgaagaaagcaag ttggcAAAAGTAATTCAGAAACACCCTTAaaagagttacaaagaaagcgg gttgataaaagtgatcttagaaacaaagaaagtaacgaagaaagcaagtc gataaaagttaacttagaaacaccctgaaagctacaaaggaagcgcgtat taaaagaataggctaagtaagagacaagggtgtaagagatttattttcaa ctctcaagttaatggtttattccttttttcattcggacatcacgaccgac acaaaagattttcagtcggtcaaatagctttatcagtcggacattgaccg atgaccgaCGCTTATTTCCAGCCCTGGTCGTACGTTTGGGGGTAACATAt aaactggaatggcccattcctCTTCCTGCGCTATTGAGATTTTCTTGGCT TTTCTAGGACTTTTCTGCTTTTTCCTGGGATAACCACCACTGTACTAAAA AATCTTCTGCAGGCTTGCGAAACTGCCTAAAACTTTCCATCCAAAGCTTA TTTTTTAACTACCCTGCTGGTCTTTTTCTGATCAGAAAAGTGGCCAGTTC GGGTCAGGTTTATGAAGAGGAAAATCCAAGACTTTATGGGCTAAACTCAG CCAATCTTTGATGTTTTTTTGGCCAAAAGAAAGTTTTGCTTTTCCTAGTT TTGATTTTCAAGTGCTttgtttatcgcgcaatttttgcgtcacacaaaat TTTCGTGtatattaaatttcgcgattcactaaactaggtattttcagaaa gtgggaatataaagcaagaaaaagactgattttgcttgaaacactacgtt tttgatgtaaaaaactaacaaagtactaagaaaaaatttttcacgtGTGT TtgatttcgcgattttgtaattgGACACAATCAATAATATGAGACCAATT TTGGCCTACTTGTGGACATTGATACCAtgtgttaaacttttatcaattat ttgaaCATGTGAATATTGACAAATATTGTAGTGACCTACCTTGATAGGTT TATACCTACCTTGATAGGTTTATGTTGAGCAAGGCAAAAGCCTCTTAGTT GCAAGCTTGGCAGAGAGTGCAGACGTCTttcatgaagaagaagaaatagt TGTAAGAACTGAACTTTACCTTGTCAATTATTTGTGTCACTCCCTGTTTG TTGACCCCCAAGCAATTCGACTAAGTGGGTACTACAAATATCAGTGGATA TGGTatcttcaaaaattgataaatcttTAACACTGTTGAGATCCTGTGTC ACAATGATCAAATCAAGATAACTTATTAACACCTAAAGTGAtgacaaaaa aatgataaaaaattaacaaggtctattttttggaaatgataaaaaatagt ctaaaactttaatttgaccttgaaattgaaaatcctttggacATACCAAA AAtgtgataattttttatcaaatttgacaGGTTTCAggctcaaaaacaat gaaatgataattttttatcagattgaagttcaaaacttggtaatttttat cataaatttgtTGGAAACTGCCAAAATTTGGGTCGTTTATTTTTaactct ttgttttgatacaTATCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNTACATATCTCTTTAAACTATACGCAGAACTACAATTTCGAATAACTT GaacaaaaatagataaaaacttAACCAAAACTAGTATGTACTTGTAAATA TTACACTAATTAAGTTTAAGTagtgtgttaaaatattatcaaaattgaca taaatcgttaaaaaatgaccaattgtttgcatattaacaaaatcttgagt atcaatgGAGCGAAATCAGAACAAGATAGAATTCAAATGATAAAATGTTA ACAGACAATAGAAGAgaagataatattttaacaatatACTTTCTGTTATT ATAGTTTTATTAGTCTTTGCCACTTAAGGATActtaattaaaactttcaa aatgctCAAGAAGCTGATCTGCAACCTAATTAAAAACACCCTAGAAACTA GAATAAATCAAACACCAATattaacaaaaatactgataaaatattaacaa aatactaaacAGAACTAACGTGAAACACTATAACAACGTTTTCTCCAAAT CTAGAGTACttacaaattacaaattttCATATTCTATTATCCTGAAACGT TGCATCCGCATATCTTATAAAATTCATTTCTGCAATTTAGTTTCACTAAT TTAAAGTTTTGGAACCCTGATTTGAAACCCAAAAATTGCCCCAAATTGAC TTAAAACttgatatcttatattttttcCTTGCTAAGATAAGttcaatttt tgccaaaattgttaaaaatttatcaCTTTTGTGTCCAAAATGCATGCAAC AATCGTTATTTCTATCTGATAAATTCACTTTCTCATTAAATCTAATTTAC TAGATTCCAACAGCAGCAAACCATTTTCGTAATTTCCTGAGTGTACCAGT GTTAcaaatttatcaatattttgttaacgctctgataaattttgtaaata tttaatATATGGCTAAATTAAACATAgcaataaattatttttcattttgg gggatttcagactttttagactttcattgaaTTGATAAGATGttaacaat gttaattttttatcatatctttgtcaaaaatgaagtttttaattttttaa atatttaaagaaCGTATTAATATCTAACTTCTGTTAAATTTTCGACCCAT gacaattaaaattcagaaacttattaacaaaacaaatttttggacaattt tatgATGTCCACAATGTTGTCTCATATTATTGATTGTCTCATATTATTGA TCGtgtccaattttgaaaaatttaaacagtattaaattttgcgaaaattg agcaaaaaactcgcgaaattaagtacccgcgaaaatttgtaacatgcgaa aatatataccaataaggtatgcattgtcaaatttggttctccattgttcA TACCAGTTCATACTGTCCTGTACTGTCAATTGTAAGGATCGATGGTGATG TCACCTAAGAATAATACAGAAAAAATTTCGTCAATTTTATGCATATATAT TGATTTgcaagatattctattcgccgcgcaAACGCCAGGCAGTCCAAGCC TtgattttcctaggggttttggtTCATTTCTCAGATTTTCAGGGGGTTAT Tagttaccgtgagattgggtaacttgcatcagtggaggctaacatgcata gccctcaaatgaaagacttggctggtcattaaaatacaactacgcagcac TGCTCGCAgttctactctaccatttttgttttgatttaattttgtatttt aatgaccagccaggtctttcatttgagggctatgtctccactgatgcaag ttacccaatctcaagGTATTACAGGTTTCCAGGTGGTTCTCTCCTCTAAA CTGACATCAATACACAATAGTCATTTTCCAGGcccttttcacaaaatttc aggggataatttccaggggataatttgttatccaaaatttccaggaggGG GGTTGGtgagaaaattttgtgaatacccctgtacaatttttttttgaata gccCATTGATggtaatttttcatcttcgttattttccaaatgaagcacaa ccaaaAAACCCAAcccaatcgaatctcaattgaatatgaaaattgcattc aattgcGTTTGGGGATGGTATTTGCAATTAATCATTGCATTCCATTTGgt taaatttgttttgaaagtctGTTCCATTCGATTGATATGATCTGGAAAAA TATCAGTTTACAGGGAAAGTTTTCTGCCTTTGAATATTGTTTATGAACAt ggacaaaacattttttgacacCTGTATTTTtgtgagggaaaaagttctct TTACAGCCAGATGAAGTATGTTTcacttttggtataaaaaaggtttgatt ttttttcttcagattcaAGAAATGGAGGAGATGGATCATGATCACATGTG AGTTCAAACAGTTCCTTTTTTTGAATTCATATCCTTCATTCATTCAGGCA AATTTCCAGGAGTTGGAGCTGCTAccatttttaatcaaaagattgAGTTT CAGAATGTGCCTTAGGCTTGAAAAAAGCAGACAGGAGGTCTAGGGCCTTG TAAACAGCCCAATCAACTGGTCCAGGACAGTCCTGGTGTGGTCTATGGGG CAAAGCCCCAAGAAAATGATGCCTTTTTGCGGAATTTTAAGTGCTATAAT TAATATCAATACAATTTTGACTCAAATATCACAAAAGTTGGGATAGtcga tttcaatttaatttttttttgccttagGATTGAAGCACTTGGTGATGATG TAGAGAAAGTTCCACTCTGTCAAGAAACAGTCAACCCCAAAGAAAAATTG GGACCGTCAGATTTTGACCTTTTGAAGGTACTTGGGAAAGGTGGATATGG CAAGGTAATTATAATTGATGATTGTTGTAGAGTCAATTTCCTTACTCAGT AGGGGATGCAGAATTAGAAATTATGCCCCTGACTATTTTCTATTTGTTTA TGGTTTGCTTTTAGTCAAGAAGATTTAACATGtatttaaaactaaaattt ttaattaagcATTGATGACTTATAAAAACAAGGGTTCTAttgcttttatt ttattttatttttcaggtatTCCTAGTACGCAAAAGGACAGGTCGGGATG CTGACAAAATATTTGCAATGAAAGTCTTGAAAAAAGCAACAATTGTTCGC AATCAAAAAGACACTGCACACACCAAAGCTGAACGGAATATATTAGAAGC AATTAAggtaattagtttttatctTGTACTGGTCAATGAAGCTTTAATTA CCCAAATCATCTGAAATCTCTAGTAACTACTGTAAGGttataaaaacatg ttttttaaaggtctttttttttccttcctcAGTTCCCTTTCATTGTTGAT CTATTATACGCATTTCAAACTGGAAAGAAACTATATTTGATATTGGAGTA TTTGCCAGGTAAGACGTTCTGGTACATTTGTTTAGTCTTGTATCTATCTT ATCTtcgtaatttttttactttgagaAAGATAAACATTCCTGACATTTTT CAGAAATTCCACACATAGCTGTCAAAGTGTTGACATTGCTGTCACAAGTC AAATAAAACAGTCTTTCTCAGTATTTGagaagtgaaagaaaaaatcgtTA AAACTGACAATTCTAAATTAGATTCTGTGATTTCAGCTAGATTTCCAGCT CCAGTTAAAACTTGAATCAACTTTGtgtatttccaaaaaaataaatatta aaatgaaaatattatgtTATCACTTAACACCCCTGCCAATTCTATAAATA TACAGtacactctctctaattcgagcttTATAGGTAttataaattttctt tgaattataaaaagatttgGATTACAGAATGTATATTACACCACTTTCCA GTGGAGGGGACCATTATAGTGAGGttgtttagcataatttacggggaaaa aataagatctagctgaaactttctccagactttctttataggatggttat gcctcaggatcccctaaaatcccactgatggaacatcccttttttgggac atttcttttttcccaaggcaaaaccctaagcagacattatcaagtatacc atttgaaagctcttgaaaaactatatagaagacttttaaacgggtatagc cgatttcattacctaactcaagataattcacacaagatgctatttatgca gatttatggtcaattttagaccaaaatgtggcgaaaagtggaacttgcgg gGTCatcagtgggattttaggggattttttcctgaggtataagcacaagc atcctatagagaaggttaGGAGAAAGTTTtaactaccttattggaactaa ttttcgcgggttttaattttagcgtttttcgcggtttttcatcaaaatcg cgaaaatttgatcccgcgaaaaattttgagagttgaaaaccgcgaaaatt aattcccgcgaaataaatttttgccaattttatcgaaaaatttgaaaaat ccctgcgaaaatgaaagaaatttgtccaaaaaagggcaaaaccgcgaaaa ttaaaacccgcgaaaattccagaatggaaaaaaccgcgaaaattagaacC CGCGAAATGTAATTTTTCGGAtaatttttttcgaccgcgaaaattagttc ccgcgaaaattagttccaataaggtagatcttatttttctcctacaaaca gcctatatttttgtaacacaCCACACTATTAGCTTAGTttcaaattacag aaatattcgaaaaatagaggtttgaattagagagagttgactgaaCTATG TATAGATCTGTAGATATGTATAGATGGACAAAATTACTTCTTCTTATCTA GGTGGTGAATTGTTCATGCATTTAGAGAGGGAAGGTGTTTTCTTAGAAGA TACAGCCAGGTATATCTTAGTGATACTATTCCAATGAGAAAATATGACAT GTGCACCGGCTCTTCAATTAGGTTTTTTACTTTAACTGGTCAGAACTATG AAATCAAGCTTTAGTTATCAAAAAGGTTTTTGTATTCCCCTACTTTTGTA CATCAAATCTTTAATGgggttgtgttttttttttctagataATTCATATG TATGTatattaaatttaaaaagtattcCTTCTTTTCCTTTTCAGTTTTTA CTTAGCAGAAATTACTTTGGCATTGGAGCATTTACATAGTGAAGGCATTA TTTATAGGTAATTCCAAGAACActatatttttctttatcaaattatTACA AATTTGAGATCAAACAAATATGTGATTACCTGTCttcttttatttgactt tttctcaACTCTCTTTTCAGGGATTTAAAACCAGAGAATATTTTATTGGA CCTCAAAGGTCACATCAAACTTACTGATTTTGGTCTGTGTAAAGAATCCA TTTTCCATGCAGACAGAACGCACACCTTTTGTGGAACCATTGAGTATATG TAAGAACCGGATTAACTTAAATTTTTAGATTGATTGACTTTTCTTTGACA CTTCTCGGCTAAAGTGATCTCTTTGGTTTTAATTAGAATAATTGCTTATG AAATGGATGGAAAGTTTATGAATAAGAATGACATGTAagcaaaattatta aaaaagatgCTATagtatgaaaaattaaattttagagTTAGTGTTTTCCC CAAAAAGGGGATTTTTTAGCGCAATTTtctgcaattttagcgattttaag tctaGGTCCGGTAACAGgacttttaaaaaacaaaagtcgtctggttttaa aaaaaaattaaaaatttttggttcttttttatcaaaatagggCACCTGAA GTCTTGACACGTAGTGGACATGGCAAAGCTGTGGATTGGTGGAGCTTGGG AACCCTCATGTTTGATATGTTAACAGGAGCAGTAAGTGTACATCTTTGAA TACTTTGAATGACTGTTTGAAGTTTTTTGccatatttttctatttttttt gcctaggttttttttattaaacCATTATTGTCACATTAACTTGTAATCAC CATATTCTTTGCCAATACTAGGATATCAAAGTGATATACTCTGCAGAACA AATTACAAAATATTACAAACGGGTTTTGCTTATTTACGATAATAATATTA CACTACGTCGCTGTAATTGACAACTGAATATTCGTCActaccaaaattag ttcttgtaATATCAGCTCTTACAGTTTCCATATACATACATGTaactgaa atatattttttttcagcctccattttgttcagaaaatcgaaaaaagaccc aggaaaaggta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030759XLOC_030759Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048333-exon-scaffold_142-1491911889:971161..971448TCONS_00048333-exon-scaffold_142-1491911889:971161..971448Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1510915933:971161..971448TCONS_00048333-exon-scaffold_142-1510915933:971161..971448Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1575043694:971161..971448TCONS_00048333-exon-scaffold_142-1575043694:971161..971448Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1491911889:977523..977557TCONS_00048333-exon-scaffold_142-1491911889:977523..977557Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1510915933:977523..977557TCONS_00048333-exon-scaffold_142-1510915933:977523..977557Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1575043694:977523..977557TCONS_00048333-exon-scaffold_142-1575043694:977523..977557Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1491911889:977888..978014TCONS_00048333-exon-scaffold_142-1491911889:977888..978014Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1510915933:977888..978014TCONS_00048333-exon-scaffold_142-1510915933:977888..978014Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1575043694:977888..978014TCONS_00048333-exon-scaffold_142-1575043694:977888..978014Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1491911889:978227..978367TCONS_00048333-exon-scaffold_142-1491911889:978227..978367Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1510915933:978227..978367TCONS_00048333-exon-scaffold_142-1510915933:978227..978367Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1575043694:978227..978367TCONS_00048333-exon-scaffold_142-1575043694:978227..978367Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1491911889:978493..978568TCONS_00048333-exon-scaffold_142-1491911889:978493..978568Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1510915933:978493..978568TCONS_00048333-exon-scaffold_142-1510915933:978493..978568Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1575043694:978493..978568TCONS_00048333-exon-scaffold_142-1575043694:978493..978568Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1491911889:979962..980019TCONS_00048333-exon-scaffold_142-1491911889:979962..980019Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1510915933:979962..980019TCONS_00048333-exon-scaffold_142-1510915933:979962..980019Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1575043694:979962..980019TCONS_00048333-exon-scaffold_142-1575043694:979962..980019Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1491911889:980255..980317TCONS_00048333-exon-scaffold_142-1491911889:980255..980317Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1510915933:980255..980317TCONS_00048333-exon-scaffold_142-1510915933:980255..980317Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1575043694:980255..980317TCONS_00048333-exon-scaffold_142-1575043694:980255..980317Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1491911889:980431..980559TCONS_00048333-exon-scaffold_142-1491911889:980431..980559Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1510915933:980431..980559TCONS_00048333-exon-scaffold_142-1510915933:980431..980559Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1575043694:980431..980559TCONS_00048333-exon-scaffold_142-1575043694:980431..980559Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1491911889:980901..980991TCONS_00048333-exon-scaffold_142-1491911889:980901..980991Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1510915933:980901..980991TCONS_00048333-exon-scaffold_142-1510915933:980901..980991Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1575043694:980901..980991TCONS_00048333-exon-scaffold_142-1575043694:980901..980991Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1491911889:981327..981371TCONS_00048333-exon-scaffold_142-1491911889:981327..981371Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1510915933:981327..981371TCONS_00048333-exon-scaffold_142-1510915933:981327..981371Clytia hemisphaericaexon
TCONS_00048333-exon-scaffold_142-1575043694:981327..981371TCONS_00048333-exon-scaffold_142-1575043694:981327..981371Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:971161..981371 +
Expression

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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.3263 5.98468 4.18831 3.28274 35.9395 28.1759 24.0221 26.5367 16.7902 20.8631 18.4829 11.3801 16.019 13.7906 11.6361 13.7169 22.2468 23.061 12.3776 19.8726 22.6579 24.6509 20.8692 22.4128 26.0859 27.7117 31.2402 24.3594 32.7057 33.8924
Blast
BLAST of TCONS_00048333 vs. Swiss-Prot (Human)
Match: KS6B1 (Ribosomal protein S6 kinase beta-1 OS=Homo sapiens GN=RPS6KB1 PE=1 SV=2)

HSP 1 Score: 328.946 bits (842), Expect = 1.020e-107
Identity = 176/236 (74.58%), Postives = 199/236 (84.32%), Query Frame = 1
Query:  349 EKVPLCQETVN-PKEKLGPSDFDXXXXXXXXXXXXXXXXRKRTGRDADKIFAMKVLKKATIVRNQKDTAHTKAERNILEAIKFPFIVDLLYAFQTGKKLYLILEYLPGGELFMHLEREGVFLEDTASFYLAEITLALEHLHSEGIIYRDLKPENILLDLKGHIKLTDFGLCKESIFHADRTHTFCGTIEYMAPEVLTRSGHGKAVDWWSLGTLMFDMLTGAPPFCSENRKKTQEKV 1053
            EK  + + +VN   EK+ P  F+LL+VLGKGGYGKVF VRK TG +  KIFAMKVLKKA IVRN KDTAHTKAERNILE +K PFIVDL+YAFQTG KLYLILEYL GGELFM LEREG+F+EDTA FYLAEI++AL HLH +GIIYRDLKPENI+L+ +GH+KLTDFGLCKESI     THTFCGTIEYMAPE+L RSGH +AVDWWSLG LM+DMLTGAPPF  ENRKKT +K+
Sbjct:   70 EKFEISETSVNRGPEKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKI 305          
The following BLAST results are available for this feature:
BLAST of TCONS_00048333 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KS6B11.020e-10774.58Ribosomal protein S6 kinase beta-1 OS=Homo sapiens... [more]
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