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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048317 ID=TCONS_00048317|Name=TCONS_00048317|organism=Clytia hemisphaerica|type=transcript|length=1724bpRun BLAST on NCBI transcript from alignment at scaffold_142:810847..819737+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048317 ID=TCONS_00048317|Name=TCONS_00048317|organism=Clytia hemisphaerica|type=transcript|length=8891bp|location=Sequence derived from alignment at scaffold_142:810847..819737+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00048317 vs. Swiss-Prot (Human)
Match: GABR2 (Gamma-aminobutyric acid type B receptor subunit 2 OS=Homo sapiens GN=GABBR2 PE=1 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 6.510e-39 Identity = 75/212 (35.38%), Postives = 122/212 (57.55%), Query Frame = 2
Query: 845 DSRFTSKDNSNTMCTATISSLSIGFTLSFGGLFSKTWRVYRIFAAARTNSRIAVRDVQLYIMXXXXXXXXXXXXXCFITFNPFH--LEGFQLSQKFYPQEDRMEIQIHQL---CSCSNQTAFVATLVSFKVLLLIFGLFMAWETRHVHIPVLNDSKHIGLAVYFVAFVSTIGAICSTALSTTGYFEESYLVIGLSIFLCTTSTLLLVFLGKV 1465
D F S+ T+CT L++G+T +FG +F+KTWRV+ IF + +I ++D +L +++ +L ID+ IL+C+ +P +E + + P +I I L C ++ T ++ + ++K LL++FG F+AWETR+V IP LNDSK+IG++VY V + IGA S T + ++ L I C+T TL LVF+ K+
Sbjct: 540 DGSFVSEKTFETLCTVRTWILTVGYTTAFGAMFAKTWRVHAIFKNVKMKKKI-IKDQKLLVIVGGMLLIDLCILICWQAVDPLRRTVEKYSME----PDPAGRDISIRPLLEHCENTHMTIWLGIVYAYKGLLMLFGCFLAWETRNVSIPALNDSKYIGMSVYNVGIMCIIGAAVS--FLTRDQPNVQFCIVALVIIFCSTITLCLVFVPKL 744 HSP 2 Score: 59.6918 bits (143), Expect = 6.510e-39 Identity = 68/289 (23.53%), Postives = 127/289 (43.94%), Query Frame = 1
Query: 7 HDGRIIFIDMDRWTAPTIFCDIYLQNMSYPRHIFISGNIHDLENNWHEM--TDDNTRRCTSQQILKAAEGFLFLKRSDFQINGGPRRAKKTRGEIWELIKRYKQRTWNHYINKYVKKKKFREEWDKITYNKGSGRVFDLVYRAALALDKLIKQHGA----EKVLMKSYHDTEKYSMITKAIKTMEFYGVSGKQRDMDLGHDLDHV-IHQYRNGSFVEVGYYTTTTNTISF--HTKLFNETRPPRDGVLLQEVFLEYKWNILLTLWIGAFSGILIALSLLFLNWSYRHKR 846
+D RII D+ A +FC Y +NM ++ +I + E +W E T+ N+ RC + +L A EG++ + DF+ P +K+ IK +T Y +Y K+ + +K G +D ++ A L + ++ A +++ +Y D +I A+ F+GV+G Q G + + Q+++ V+VG Y +T+ T F + PP+D ++ E + + L G+++A + LF N R+++
Sbjct: 246 NDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWY--EPSWWEQVHTEANSSRCLRKNLLAAMEGYIGV---DFE----PLSSKQ--------IKTISGKTPQQYEREYNNKR------SGVGPSKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTG-QVVFRNGERMGTIKFTQFQDSREVKVGEYNAVADTLEIINDTIRFQGSEPPKDKTIILEQLRKISLPLYSILSALTILGMIMASAFLFFNIKNRNQK 510 The following BLAST results are available for this feature:
BLAST of TCONS_00048317 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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