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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048303 ID=TCONS_00048303|Name=TCONS_00048303|organism=Clytia hemisphaerica|type=transcript|length=2785bpRun BLAST on NCBI protein sequence of TCONS_00048303-protein >TCONS_00048303-protein ID=TCONS_00048303-protein|Name=TCONS_00048303-protein|organism=Clytia hemisphaerica|type=polypeptide|length=496bp MSKVIVWEYETDMHGLFAPYEDNISNSIEDAYVKNPQDQNVDLGKIDHLLRun BLAST on NCBI transcript from alignment at scaffold_142:649328..658752+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048303 ID=TCONS_00048303|Name=TCONS_00048303|organism=Clytia hemisphaerica|type=transcript|length=9425bp|location=Sequence derived from alignment at scaffold_142:649328..658752+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_142:649328..658752+ >TCONS_00048303 ID=TCONS_00048303|Name=TCONS_00048303|organism=Clytia hemisphaerica|type=CDS|length=14910bp|location=Sequence derived from alignment at scaffold_142:649328..658752+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048303 vs. Swiss-Prot (Human)
Match: DTX2 (Probable E3 ubiquitin-protein ligase DTX2 OS=Homo sapiens GN=DTX2 PE=1 SV=3) HSP 1 Score: 185.267 bits (469), Expect = 4.005e-49 Identity = 98/215 (45.58%), Postives = 126/215 (58.60%), Query Frame = 1
Query: 1027 NEQCAICLSELED--------DNMTSLPENVLQLKICKHKFHESCLEALYKSSHNQQHCLRCPICKQIHGVLKGDQPPGRMT-----HRMDRHQDCEGYRGDGLIIITYNINHGIQGPEHPNPGHPYYTGNFPRTAYLPANKKGTKCLKLLEVAFERRLIFTVGTSATTGHDNCVTWTNIHHKTSSRNDGSGHGYPDPGYMDNLIEELKNVGVTD 1632
+E C IC+ +L D+ V L C H FH CL A+Y + N+ L+CP CK I+G G QP G+M + H+DC G I+I Y+I HGIQGPEHPNPG P+ FPR YLP N +G K L+LL+VA++RRLIFTVGTS+TTG + V W IHHKT + +GHGYPDP Y+ N++ EL GVT+
Sbjct: 409 DEDCIICMEKLSTASGYSDVTDSKAIGSLAVGHLTKCSHAFHLLCLLAMY-CNGNKDGSLQCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDC------GTILIVYSIPHGIQGPEHPNPGKPFTARGFPRQCYLPDNAQGRKVLELLKVAWKRRLIFTVGTSSTTGETDTVVWNEIHHKTEMDRNITGHGYPDPNYLQNVLAELAAQGVTE 616 The following BLAST results are available for this feature:
BLAST of TCONS_00048303 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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