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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048298 ID=TCONS_00048298|Name=TCONS_00048298|organism=Clytia hemisphaerica|type=transcript|length=365bp
CAAACATGTAATTTCACATCCTTGATCACGAGGGtgtatgtaaacaaaaa
aagttgatGTTGAAAAGGACATATGATATTAAAACACGCTTGACAAAACT
GTGGAATGATTATTTGTGTTGTTTGTATAAAAGCACACGTACAGTAGAAA
TATTagtctttgaaaatttgacccaAAGAAATTTATTGTGAGACCTAATT
CGTGTAAATGCATACTTTAACACCATTACATCAATTCAAATTACTCACAT
CGGTCCAAGAAAACATCATTTCATAGAAGATGACATGGCGTGTTTTACTT
TTGGTGTTAATATTACACTTTCAAGGATTATCATCGCGAGAGATTTACGT
TTCACAGAACGAAGC Run BLAST on NCBI transcript from alignment at scaffold_142:551090..558176+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048298 ID=TCONS_00048298|Name=TCONS_00048298|organism=Clytia hemisphaerica|type=transcript|length=7087bp|location=Sequence derived from alignment at scaffold_142:551090..558176+ (Clytia hemisphaerica)
CAAACATGTAATTTCACATCCTTGATCACGAGGGtgtatgtaaacaaaaa
aagttgatGTTGAAAAGGACATATGATATTAAAACACGCTTGACAAAACT
GTGGAATGATTATTTGTGTTGTTTGTATAAAAGCACACGTACAGTAGAAA
TATTagtctttgaaaatttgacccaAAGAAATTTATTGTGAGACCTAATT
CGTGTAAATGCATACTTTAACACCATTACATCAATTCAAATTACTCACAT
CGGTCCAAGAAAACATCATTTCATAGAAGATGACATGGCGTGTTTTACTT
TTGGTGTTAATATTACACTTTCAAGGTATTTATACTTATTTTCTATCATA
TTTTATCATTTCTTCGTTCACTGCTGCTATGTTTGTTTCAGAAGCGTGGC
CGGCTTTATTTGTTCTCCTGTTGAAAAAGCTAACTTTTGAGCGTTGACGG
AACATTCTCTCCTACCCACTCTTAcacgctgttttttttttgctaaaccT
TTCCTGATATACACTTGTCAATATCAAATCAATATTAAAAAACAAGGGTT
CTTTTTACTTGGGAGTTCTTTCTataaagacactaaaatcaagtCTGATG
aaatataaaagaaattattataaaactacttgacacgacccaaatattat
tattatattataccttattaggaccccttgtttattaattcttaagaata
ttttcagctgtcaaagagaaggccccttattttgctctaaatagcctgat
tttagcctatatttaccttaatttggggtttcagaagtacaatttccaag
ccccggcaattaggtccccccccccgtttattaaaatctcgaaaatttcc
tagcctaaaggctcggaaaaatattacggaaaaatcccATAAGCTCATAA
AATACTTCCCGTATTGTACTCGAAGTTATGCGATATTAGTACTTATATTT
ATTTTCATAGGATTATCATCACGGGAAATTTACGTTTCACAGAACGAAGC
AAGTGAAGATATCAAAACGTGCGGCATACAAACACATCCCTGTCAAACTA
TTTCTTACGCTATCTCAATATCCAAACACAACGATACCATCCTTTTAGAT
GCTGAATACACctatattcaaaatgaaactcTTATTATAGACACGTCTTT
GAAATTCACTTCATACTATAACAGACATGGTAGTAAAGCAAAGATATTGT
TTGAAGAGGGAAAATTTCCTATTGACTATTTGATTCAAAGTTCAGCCAAT
ATTTCATTCTACAAGCTTCAAATCTTCTCACAACTTGTCTATCAAGATAA
TATATTCAAAATGGGTAAAAAAGGATGCTCCTTGATTATAGAACATTGCG
TCTTAAACTTTTCACAGCCACTAGAATCAGACTTCATAGATTACACTAAA
GATTTCAAGAGTGCTCTTATAGTAAAAACAACATTACACAGTCAAAAGAA
CAAAATTCagaatacaataaaaaaagcgAAAGGTGTTATAAAAGAAACTA
GTATTGACTACCATGcaagcataacttttgatgattGTCATTTTGTTAAT
CAGATAATGGCCATCACCTTCCAAAGAATAACAGTTAATAGATCAATACT
CATTGATTCCTTACTTTCATCTAATCCAATAAAAGATCTTCAATTACACC
AGAGTCAGTTTTTTCGATCATCGGTAGAGACTACAATTGAATATGGCAGA
CTCAGTGTAACCAATTGTACATTTCAAGGTTCGTCAGAGTATGGGGATCA
AGAAGGAGATTATGCATTCATGCTACAAGTTCACCCTGGTGATACTAATT
ATTGGGAAGGAACAATCCGAGATTGCACTTTCAAGAGAGCATCTTACGGT
GCAGTCAAATTAGAACGTGGGAGTGTAGAATTGATCAATCTGACATTCGC
AGATAACTACATAAGTGATCAACCAATGATACCAACTGACAGAGCTGCAG
CCTTGACAACACGCTCAACTGACATGGATTTAGTCAATTGTACCTTCAAC
AATAATTCAGCCCGTTCTAATCAAGCTGGATCTATTTTTACCAAGCTAGG
GACCGGTGAAAGACCATATACTTCAGTTTCAATCGTTAACACCGTTGTTA
ATTCTATTAGGAGCCCCTTGTTTAATGATATCAGGAGCATTTGGATTGAG
CCAAGTATTTATAGCTATCCAACAGGATGGCTTGAAATCACAAAGACCTC
AAAATTGAATTGCTTTGAAGGAAGTTACATCTACGAAGAGTTTGAGAGCT
ACCAATATTTGAGACTACACTGCATCACCTGTAATAGTTCATCTTATAAC
GCAAACGGTCATGCTTTTATAACAGGCAATGAAAGAGCTGATAACATAAC
AGTCCATAACATTAACTGCCATTTATGCCCCTACCAAGCCTCTTGCAAAG
ACGGCATTATTCGAAGTAAAGGCAATTTCTGGGGATTAGCTGACAGCTCT
GGCAAAGTGACATTCTATTCATGTCCTCCTTTATATTGTTGCTCGTCTTT
TGAAACATGCAAGTCATACAACACTTGTGCTGGGAATCGGGAAGGGAGAC
TTTGCGGCGATTGCCAAAAAGGACATGTTTTATCTTTATTCAGTCACAAC
GAATGTATGGATAAATCGTGTTGTGAGTATTCGTGGACCGTGTGGTTGGG
ATATATATTGATGGCTGCtttgatttgtttgtttttcttgttcAACAAAG
ACGTTTGGAACTacataagaaataaaaataaaaatgttgagaCCGAGGAA
TCACTTCTGGACAACGACGATAATAACAAACTATTGATTACGAGTTCTCC
GTTTAGAAAAAACCTCTCACCATCCTACCAACTACCTGGCATAATTAAAA
TCACATTCTTTTTTTACCAAACCGCTTCCATCATTCGAGTTGTTGCTTCA
GCAAAGACTTATTACCACATGCCAAACTTTGTCAGctttttgtttacatt
cttCAATATCAAATTGGATTTCACTTCCAGTTTCATCAAAATTTGTCCTC
TGTGTACAAATAGTATGGTTGTTATGGATGCATTGAAATCTAGTTTATCG
TTAGCATGTTTGGCAATTCTTTTACTGGCAATGATTATCTGTGTTGCACT
CAATTTCATTATAAAGAAGAGGTTCAAGGATGGAACTACCGCTCAAGTCC
GTCCGCAGTCATTCTTACGTCGTTTGAAAGGAGCATATGTCAATGTTTTG
CTACTCAGTTATTCCAATATCTCAGTTTTTTGTTTACGAAATATTCATTG
TGTAGAGGTTGCTGGCGAATCGTATCTTCGCGTTCAAGCCTCAATCAAAT
GTTATACTGATTGGCAATATCTTATCATGGTTGCGATTGGTTTATGGGTG
GTCCCTTTCCCGTTAGTCTTGTACACTGGCTGCCGCGCCCTTCGATCATA
TCGTATCTCGCCCAACGAGTTTCTTCTCATCCTTACTTTACCGCCCCTAT
CACTTTATTTCATGGTCATCCGCCCTCTGGCGTTCACCCAGTACCATTTC
GTTTTCGACCAAGCCACTCtcgatgaaaaagatcaaatattGGGTGTGTT
AAACGGACCtttcaaattgaatttgaaaaaccAAGAATCTCATCTCATCT
GGGAACCTGTTTTGATTTTACGCCGTTTTTTATTGATCGTCATGACAACA
TTTATTTCGTCACCGATCGTTAAATTGTATCCAGTGGGTttgcttttctt
tatttttgctgTTCATGATTTTGTGCAAAAGCCGTTTAGGGAGgagaatt
tgaattttattcaaatcgtgtcaattttagttttgctattattgacattt
ttcaacatGTTTTGGGCAGTGACTAACAATGCGGATTTGCTTCAAGACAA
ACTTTATTACAACCTTGGTGAAATATTGCTTGTTTGTGAAGCGGTTATTA
TATGTTTACCCATTCTTTGTATGATCGTTTTAGTCCTTTATAAAGGCTCA
GTCTTTATCTTTGATCGTTTCTTTAATAGGCGCggttaaattaaaaaaag
agagaCTTTTGCAATTTTCACGAATTTTTGCCGTTTTCATGAAATTTACT
CCTCACGAAAAAAATCTAGAATAaggattttcgcaaaaaaagcGTAGGCA
AATGACAGAAATTAAATGAAAAGAGGCTGATTTGTGAAATTTCATTAATg
cgaaatttttagattctcacttcgctaaaaaaaaatgcccacgcgaaaat
ttatcctcttataaaaaagtatattATATGAAGTACAAAGAGTGATTGTT
GTTATCTAATAAATCTTGAAGAAGGGGGTTTGAAAAAACCATTACATAAT
CCAATATAAAATGTGATTTAGCATTTAGAATTATTCGAATCTATATGATT
gtgtgaaaattataattgtatACTGACTTCAGGAAAATATCATGACCAGA
TTTTGTGGAATCAGGATGGAAGAATAAAACACGTAAGCTTTTCGTGATTT
TTGAAATCCTTCTGGAGATCTGTCTCTAGTATTATCTTGaaacttttgag
attttagacATCTTTACGGGATAAAGGGAATCTGAAGGAAATTTTAGGGA
TTTTTaagtaattttgaaattattttcagaGAATTTTTTGATAggtaatt
acacgtttttttttataagaacaaactatataagaacatgaggcttcgag
gcccagaaatttaagaacattctaagaacatactaaggctttggagactt
aaaaacatgcaatttcttaaaagaaattacatcaaaatgctcaaaaaatg
ctgaaaataagaacattttaagaacatttttaggcttcaaatccaaaaaa
ataagaacatccgaaggcttcgaaaatttttgacgttcttataaaaaaaa
aacgtgtagcctcttttatttcaaatttcttttaaacgTGTACATTTTGC
AGATAGCTAATTTTCAttacaacaaaattttgctatcAAATCTGTTGCTC
AAGAATGATGTATGGAAGGATTGATTAATTTAATCTTTATAATAATTGTT
CACTTTATTCAGAATTAAATATAGTACAATAATAGTATGATTTAGGATTT
TTATTTGAGCTAGTCTAGTTTTTCTTATAACAACGAATCGATATTATAAT
CCTGtaaaatttatttgtaaaaagtttggaaaattggaaaatttgtcTAA
TTTGGTGGACTTAATTCCTCGAAAATGACAGATACGCCTTCAAAActgta
aatattttaatataCTACCGTCAACATTTTTGAGagaacttttaacgaaa
aaaaaaagCATCTCAAAGAGTATTCTCTCGATTAGAGGTATAGTTTATAG
GGTTTCCATTGCTAGATCTTAAGATAttattgacttttaaatttgacTTT
ATAAGAGCATCTAGAATTttggaagccttcggatgttattatttaacttt
ttctcatcttgaccattttgtgagtatttttattcaaaaattgcgtgttt
tagagtccgcaaagcatcaaaatgttctcaaagGATACCATAGGCAGTAT
CTCCTATCATTTACACTTACACAACAttctaaatcaaaagaaaaaacttt
ctctCCTTTCGGAGGCACGCGAgcgagaaaattttttagaatttttgttt
gTTCTACTTTGTCAGCATAGAAGCGCGTCTGTTTTCTATATCATgaaaat
atatctttattttgctctCAATACAGTCTTcgcaatcgaagccttatgtt
cttacatggtttgttattataaaaaacagtgTAATATTCCACTTGCATTT
GCGGTCATTATTTTCGACGAGCACAGAATTGAAATGCTCTTCGTATGTTC
tttgtataagaacaaaatataccACAAAAACATAATgtttcgatagccaa
aatatcaagaacaagttaagaacattttaagccttcTCGGGCTCCCGATT
TCTTTGGAACTGcacaaaaacacaaaatggtgaaaataaaaacaattcaa
gaatattttaggatttaaactcaaaaagttaaagagCATCCAAAGACTTC
AAAGGTttttaagaaaacgtgtatttaaactttgacattttatcaacttt
aattcaacaaataatttgaaaagagCTTTACAGTGATGCTTCTTATGATA
AAGAAATCCAAAAGGAGGGAATTCTGATATTAACTCTTTACAgctttttt
ctattgtaaatAATGAGATGTTAATTTTGACGAGTACATTCGAAGGTAAG
TATAGGGCTAACGACTATTGCTTTTAGTTGCCTTTAATTGGAAAGAAATG
atttagaaatgattatttcaGCTTTTCAATCAAAAACCTTTCATTACTGG
TTCACCAATGTTATAAAGTAGATTGACGTAAAATCATTATAATTTGTCGG
GAGAAAACAGATTAcagtatacacgctttttttttttataagaatggtgt
atttTCAttccatcatggatattcttaactttttggcgaaaatcatccaa
aaatattcttacggtattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNttcttataaaaaaaaaagcgtgtaaacaaACTAAAACAATGAGATTC
AATTTCGCTTTCATTTTATTGTTATTATGCGCGATATAcaaaggtaaata
gttttttCCAATATACATTTTTCCAAACTATTCagagaaattttaatttt
atttcaattattttaagcTCAGTTTAAAGATgatgagttttgaggatttt
actttacatAGAAATTTGTCCGCTtcttttgggacacactgtataatACG
AGGTCTTTACAACGCGAGTTGTTAActtcattttccaattttcgtaGGAT
TATCATCGCGAGAGATTTACGTTTCACAGAACGAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048298-exon-scaffold_142-1491911889:551090..551414 | TCONS_00048298-exon-scaffold_142-1491911889:551090..551414 | Clytia hemisphaerica | exon |
| TCONS_00048298-exon-scaffold_142-1510915933:551090..551414 | TCONS_00048298-exon-scaffold_142-1510915933:551090..551414 | Clytia hemisphaerica | exon |
| TCONS_00048298-exon-scaffold_142-1575043694:551090..551414 | TCONS_00048298-exon-scaffold_142-1575043694:551090..551414 | Clytia hemisphaerica | exon |
| TCONS_00048298-exon-scaffold_142-1491911889:558137..558176 | TCONS_00048298-exon-scaffold_142-1491911889:558137..558176 | Clytia hemisphaerica | exon |
| TCONS_00048298-exon-scaffold_142-1510915933:558137..558176 | TCONS_00048298-exon-scaffold_142-1510915933:558137..558176 | Clytia hemisphaerica | exon |
| TCONS_00048298-exon-scaffold_142-1575043694:558137..558176 | TCONS_00048298-exon-scaffold_142-1575043694:558137..558176 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_142 | supercontig | scaffold_142:551090..558176 + |
Blast
The following BLAST results are available for this feature:
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