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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048297 ID=TCONS_00048297|Name=TCONS_00048297|organism=Clytia hemisphaerica|type=transcript|length=499bp
aagggttaaaGAACTCACATATGGAACCCTCAATTTTGCCTCAATTGTAG
TAACTGACAATTGAAGAAAAGTTACCTTTATTAGCATGACTGTTGACGAC
AACATCGATTGAATTGATACCAGACTGGTGAATCTTATGATTGAAGCACA
ACAATGCTTCACCAGAAACGATGTCGGTATTCAATAACACTGCTTCTTCC
AGCTCGTGGAATTTGAATCGGTTTTTATTGACGTGGTTTGAACCCACCTT
TTCTCCGAGTACGgtaatttcattttgattttcttgatttCGATCAATTA
ACTTCTGTCTGTaggtttcaaaaatcttttccaaATTCCACATGGAAAGA
TGGCCGTCAGTTGATGTTGCCATGACGATGTGGTCACGTGACACATGGAG
CCATTTGACAGTTTGGAAACAATGCTTTTTGTCACCGAGAAGCGAGATCA
TTTCTATACCATGTCCATCAAAAAGATATATcctaaaattgacaaattt Run BLAST on NCBI transcript from alignment at scaffold_142:537025..538403+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048297 ID=TCONS_00048297|Name=TCONS_00048297|organism=Clytia hemisphaerica|type=transcript|length=1379bp|location=Sequence derived from alignment at scaffold_142:537025..538403+ (Clytia hemisphaerica)
aagggttaaaGAACTCACATATGGAACCCTCAATTTTGCCTCAATTGTAG
TAACTGACAATTGAAGAAAAGTTACCTTTATTAGCATGACTGTTGACGAC
AACATCGATTGAATTGATACCAGACTGGTGAATCTTATGATTGAAGCACA
ACAATGCTTCACCAGAAACGATGTCGGTATTCAATAACACTGCTTCTTCC
AGCTCGTGGAATTTGAATCGGTTTTTATTGACGTGGTTTGAAGTCACCTG
CAAAAAAATGCATCAAGAAGGGAAGCATGATTACAAaaacagaaataatt
tttttggataaaCAGATCCAATTTTACATGTTCTCATAAATTTTAATAAG
GGCTAATAATAGCAATAGTCCCTTCTTTTTTCATCCTAATTTTCTGAAGA
ATCTTTCCCAAACGTTACAAATTTCATCTTTAAAACATTAAGAtgaataa
gaatatttttttgaaacataaTAATTCATCATGTCGTCCGCATGAACGAC
AATCGTCAGCAAATTTGATTATACGCCATGAAAAGCAGGTTTTTTTATCG
TTTGGGTCGTTGACTGAGAGAATTATGTGTCGACCGGTCATTCAAAGAAA
TAATGAAGTTGAGAGATATTAAGACTGTGTTCAtacgtgacggttccgtt
tcatGGTCTAAAAGAAAGATCACAGACGGAAATGGCACGTGCTAAGGAGG
AAAAGTAAATCATTATCGGGTTAGGgtttttttttgattgaaaggaaGTT
TACCCTTCTTACCTGTTTTATTTTAAACCAGTCCTCATTACTCCAGCTAC
AAAAAATAACGGCAATATAGGCAAAtgtaaagtaagtaagtctgaGTCAG
AGGCGACCCGCAGGCTTcactttcgatagctatctgcCTGAAGGCCTGAA
GGTAGGGGAGTGcgtcactctttctccctggattgctttgatccttctct
taatttcTAAGCATCAAttagagaggcatcaagtacattttaggaatctt
tggtatgacccagctgggggttgaacccacaaccttgcgcaccgtagccg
aatgctctaccactgcactacggtcgcttgaAAAGGCTAACGTAAAAGGG
CCCAATAAATTAGAAGAAAAAGCCCACCTTTTCTCCGAGTACGgtaattt
cattttgattttcttgatttCGATCAATTAACTTCTGTCTGTaggtttca
aaaatcttttccaaATTCCACATGGAAAGATGGCCGTCAGTTGATGTTGC
CATGACGATGTGGTCACGTGACACATGGAGCCATTTGACAGTTTGGAAAC
AATGCTTTTTGTCACCGAGAAGCGAGATCATTTCTATACCATGTCCATCA
AAAAGATATATcctaaaattgacaaattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048297-exon-scaffold_142-1491911889:537025..537266 | TCONS_00048297-exon-scaffold_142-1491911889:537025..537266 | Clytia hemisphaerica | exon |
| TCONS_00048297-exon-scaffold_142-1510915933:537025..537266 | TCONS_00048297-exon-scaffold_142-1510915933:537025..537266 | Clytia hemisphaerica | exon |
| TCONS_00048297-exon-scaffold_142-1575043694:537025..537266 | TCONS_00048297-exon-scaffold_142-1575043694:537025..537266 | Clytia hemisphaerica | exon |
| TCONS_00048297-exon-scaffold_142-1491911889:538147..538403 | TCONS_00048297-exon-scaffold_142-1491911889:538147..538403 | Clytia hemisphaerica | exon |
| TCONS_00048297-exon-scaffold_142-1510915933:538147..538403 | TCONS_00048297-exon-scaffold_142-1510915933:538147..538403 | Clytia hemisphaerica | exon |
| TCONS_00048297-exon-scaffold_142-1575043694:538147..538403 | TCONS_00048297-exon-scaffold_142-1575043694:538147..538403 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:537025..538403 + |
Blast
The following BLAST results are available for this feature:
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