TCONS_00048296 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048296
Unique NameTCONS_00048296
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length853

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048296 ID=TCONS_00048296|Name=TCONS_00048296|organism=Clytia hemisphaerica|type=transcript|length=853bp
CTACTGTTTGTCCGTCCTCTAAAGGAAAGAGCAAGTTTGTTGTGACACTT
TCATCATTGTCAGTTGGGACATTCATACTTTCTCGCTgtacaaaaaatgg
aaaatattcAAGTAATAACCATTCCAGTATGGCTATTACTTTTAACTGCA
AACAGCAGATTAGTTTTTTCACAATCAATATTGTGTGTGGAGAGGAAAAN
CTTTTAACTGCAAACAACAGATTAGTTTTTTCACAATCAATATTGTGTGT
GGAGAGAAAAAATATCACCGTCATTCCTCACATTGATATTTACCAGCAAT
GGAAAGGAGTCGACTGGATAGAAGAATCTATTAAACATCAAAGCATGCAG
CTAAGGTACTTAGTAAAAGCTTTACTGGAAACATCTTGTTTTGAAGTATG
GTTTTATTCACCCATTCAAGACCGCTGTATTCTACAAACTGAAGACAACT
ATGTTCGATTTCTGGAGACAGAATGGTTGGCAATGACAAGCACAGACGAT
AACGACATTTTGAATCTTCTGTCAAATATTCCTCGGAGTAACGATGAAAT
AGAGCAAACCTTACTGTTTTTCAGTTATTATATTTACCCTGAGAAAGAAA
TAACACATAAATCGATAATCGCAGACAAACTGAAAGTGACACAAGACAAA
TATAATATCATTTTGTTATGCCAAAAAGGTAACTCTGTTTTCTGCACCCA
AAGTGGAAACTGGTTAGCAAGACAAAAGATAATAAACATTACCTTTAACA
CGCTATCTTTCAATCCACATCTTCATTCTATTCTATTGGACCTTATAAAT
AATCCGTCTTACGATTGGTTTCAGAAATATACGAGAAACCAGTACCATTG
TCA
Run BLAST on NCBI

protein sequence of TCONS_00048296-protein

>TCONS_00048296-protein ID=TCONS_00048296-protein|Name=TCONS_00048296-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
TVCPSSKGKSKFVVTLSSLSVGTFILSRCTKNGKYSSNNHSSMAITFNCK
QQISFFTINIVCGEEXLLTANNRLVFSQSILCVERKNITVIPHIDIYQQW
KGVDWIEESIKHQSMQLRYLVKALLETSCFEVWFYSPIQDRCILQTEDNY
VRFLETEWLAMTSTDDNDILNLLSNIPRSNDEIEQTLLFFSYYIYPEKEI
THKSIIADKLKVTQDKYNIILLCQKGNSVFCTQSGNWLARQKIINITFNT
LSFNPHLHSILLDLINNPSYDWFQKYTRNQYHC
Run BLAST on NCBI

transcript from alignment at scaffold_142:529464..533325+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048296 ID=TCONS_00048296|Name=TCONS_00048296|organism=Clytia hemisphaerica|type=transcript|length=3862bp|location=Sequence derived from alignment at scaffold_142:529464..533325+ (Clytia hemisphaerica)
CTACTGTTTGTCCGTCCTCTAAAGGAAAGAGCAAGTTTGTTGTGACACTT
TCATCATTGTCAGTTGGGACATTCATACTTTCTCGCTgtacaaaaaatgg
aaaatattcAAGTAATAACCATTCCAGTATGGCTATTACTTTTAACTGCA
AACAGCAGATTAGTTTTTTCACAATCAATATTGTGTGTGGAGAGGAAAAN
CTTTTAACTGCAAACAACAGATTAGTTTTTTCACAATCAATATTGTGTGT
GGAGAGAAAAAATATCACCGTCATTCCTCACATTGATATTTACCAGCAAT
GGAAAGGAGTCGACTGGATAGAAGAATCTATTAAACATCAAAGCATGCAG
CTAAGGTACTTAGTAAAAGCTTTACTGGAAACATCTTGTTTTGAAGTATG
GTTTTATTCACCCATTCAAGACCGCTGTATTCTACAAACTGAAGACAACT
ATGTTCGATTTCTGGAGACAGAATGGTTGGCAATGACAAGCACAGACGAT
AACGACATTTTGAATCTTCTGTCAAATATTCCTCGGAGTAACGATGAAAT
AGAGCAAACCTTACTGTTTTTCAGTTATTATATTTACCCTGAGAAAGAAA
TAACACATAAATCGATAATCGCAGACAAACTGAAAGTGACACAAGACAAA
TATAATATCATTTTGTTATGCCAAAAAGGTAACTCTGTTTTCTGCACCCA
AAGTGGAAACTGGTTAGCAAGACAAAAGATAATAAACATTACCTTTAACA
CGCTATCTTTCAATCCACATCTTCATTCTATTCTATTGGACCTCATAAAC
AATCCATCTTACGATTGGCTTCAGAAATATACGAGAAACCAGTACCATTG
TCACGTGTCAAACTCAAAGGAGGTTAATATCTTTGTATGGTCAATCAATT
TCTTAAGACAAAACCAAACTGCTGGCCAGAAAAATGTTGATATGGCTTTT
TCAATAGGAATACTACAGAAACAATTTAATTCTTCTGTCACATTCTACCG
CGTATTAGTGGTTGGCGATTGGTCAAGCAAGCCATACTGGGGTCCATAca
gtttaaaatctttggaaaaaGAACCAAGACTTGTACGGAAGGAAGATCAA
AAATCAACAAGCGAAGTTATCAAAGCCATGGATATAAGAGGTATTAAGTT
ACACATAATCTTTTATAACAAAAGCGTAAAACCAGATTTGGGCGCTCTTC
CTTTTACATTGGACAATGCAATTATTATTGTTGTAGATGATCACATCGCT
GAGTCTCCAGTaataaacaaagatggtacTTTCGTTGTTTCGCCAGAAGA
TTTAATGAATCCTTTATTTATTAGAATGCTGTCCAAGAAAATGAACTCNC
GCCAGAAGATTTTATGAATCCTTTATTTATTAGAATGCTGTCCAAGAAAA
TGAACTCAATCATATGTGGAAAGTAATTTACGATAAGGAGTgttaaccca
gctggcacgcaacgttttttcaacgtttatctaatgttcgtAACGTCCat
atccatataacgttagatgaacgttgaaacaacgttgcgtgccagctggg
aaaatctttctcaaaaatgtggaaactttttttttttgagaatttctcAA
CATGgatatgaagaagaaaaatgaagatgaaaacaaTGAAGATCTTTTCT
ACTGTTTCAAAAATCATGACATAAAATTGTTTAGAATATTTCAACcttgc
tgatttcaaatttgtACTCAGATCTTTCGTACCTTTAGGTAAAAAGTTAC
AGCACTCTGAAGTTGGCCTTAaggccaaaaatgaccaaaatcagaaaaat
gacCAGCTTCAGTGTTTCAAATTCTTATCtgagaaagataaaaaaaattg
aacactTTAAAAACCGCAAGGTTCAAATATTCTAAGCAATAACTATGTCA
TGATTTTTGAAACAgaagaaaaatctttattttcatcataaattttcttc
ttcaaatttctattttatgaaaatcttcaatgacaatgtattaaataatt
ttttacaacttttttcggaattatctttttctttttttgttttatttttt
tgcttagaGAGCATTAAGAGAAAATTTCTACGATGGCCCCGAGGTTTCTC
CACTTCTAGAAAAAGACAAttcaagaagagaagtaaaaaatgaagaaggg
aagtaaaaattttaagaagagaAGTAATNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCTTCTCGAAATATTTACTTcccttctttaaatttttacttctc
ttcttgaaactttcagaactttttttaGAAGTGGAGAAACCTCGGGGCCA
TCGTAAATTTCTTATGTCAAGTTGTTTGATGGTTGTTGATCGGAGTCTGT
CATGGGGGAAGTCTTAGTCAATACAGAGCATGCATCgggtttttcaatat
tttacgtCTGAAATATCATAAGCTTAATCCCTCCTGTAGTTTTTTTATCT
tacaaaatttcctttttacaCTCATATTTTTATGCCTTATTTTAAATCCG
GAGATATTGAGGTTAACCCTGGGCCGGAGAGGGAGACCACGCTAAGCATT
TATCATTGGAATCTGAATAGCGTTTGGGTTGAAGATTCTATGGGAGATTT
TATTAAGATTAAACAACTTTCTGCATTTCTGAACATTCATAAATTCGACA
TTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTCGTTTTTGTTgttatatcaaagaaattcattaaaataaatctatt
gtcaatttcatgaacacattttatgactcaaagtcattaaaaaattaaaa
aataaaacattcgaacgttcgattatatgggagtgttttatgtGAAACGC
TTAACGATTGACATATATAATGTTTCgtttttgcctctaggtatataata
aaacatatattcaataggttttcgttggttattggatttattaaccctcg
gtgattatattcaactcggcttcgcctcgttgaatattacatcacctcgg
gttaataaatctcaataaccaacttttacccattgaatatctgcttatta
acTTTGAAACGCTATCTTTCAATCCACATCTTCATTCTATTCTATTGGAC
CTTATAAATAATCCGTCTTACGATTGGTTTCAGAAATATACGAGAAACCA
GTACCATTGTCA

Coding sequence (CDS) from alignment at scaffold_142:529464..533325+

>TCONS_00048296 ID=TCONS_00048296|Name=TCONS_00048296|organism=Clytia hemisphaerica|type=CDS|length=1698bp|location=Sequence derived from alignment at scaffold_142:529464..533325+ (Clytia hemisphaerica)
ACTGTTTGTCCGTCCTCTAAAGGAAAGAGCAAGTTTGTTGTGACACTTTC
ATCATTGTCAGTTGGGACATTCATACTTTCTCGCTgtacaaaaaatggaa
aatattcAAGTAATAACCATTCCAGTATGGCTATTACTTTTAACTGCAAA
CAGCAGATTAGTTTTTTCACAATCAATATTGTGTGTGGAGAGGAAAANCT
TTTAACTGCAAACAACAGATTAGTTTTTTCACAATCAATATTGTGTGTGG
AGAGAAAAAATATCACCGTCATTCCTCACATTGATATTTACCAGCAATGG
AAAGGAGTCGACTGGATAGAAGAATCTATTAAACATCAAAGCATGCAGCT
AAGGTACTTAGTAAAAGCTTTACTGGAAACATCTTGTTTTGAAGTATGGT
TTTATTCACCCATTCAAGACCGCTGTATTCTACAAACTGAAGACAACTAT
GTTCGATTTCTGGAGACAGAATGGTTGGCAATGACAAGCACAGACGATAA
CGACATTTTGAATCTTCTGTCAAATATTCCTCGGAGTAACGATGAAATAG
AGCAAACCTTACTGTTTTTCAGTTATTATATTTACCCTGAGAAAGAAATA
ACACATAAATCGATAATCGCAGACAAACTGAAAGTGACACAAGACAAATA
TAATATCATTTTGTTATGCCAAAAAGGTAACTCTGTTTTCTGCACCCAAA
GTGGAAACTGGTTAGCAAGACAAAAGATAATAAACATTACCTTTAACACG
CTATCTTTCAATCCACATCTTCATTCTATTCTATTGGACCTTATAAATAA
TCCGTCTTACGATTGGTTTCAGAAATATACGAGAAACCAGTACCATTGTA
CTGTTTGTCCGTCCTCTAAAGGAAAGAGCAAGTTTGTTGTGACACTTTCA
TCATTGTCAGTTGGGACATTCATACTTTCTCGCTgtacaaaaaatggaaa
atattcAAGTAATAACCATTCCAGTATGGCTATTACTTTTAACTGCAAAC
AGCAGATTAGTTTTTTCACAATCAATATTGTGTGTGGAGAGGAAAANCTT
TTAACTGCAAACAACAGATTAGTTTTTTCACAATCAATATTGTGTGTGGA
GAGAAAAAATATCACCGTCATTCCTCACATTGATATTTACCAGCAATGGA
AAGGAGTCGACTGGATAGAAGAATCTATTAAACATCAAAGCATGCAGCTA
AGGTACTTAGTAAAAGCTTTACTGGAAACATCTTGTTTTGAAGTATGGTT
TTATTCACCCATTCAAGACCGCTGTATTCTACAAACTGAAGACAACTATG
TTCGATTTCTGGAGACAGAATGGTTGGCAATGACAAGCACAGACGATAAC
GACATTTTGAATCTTCTGTCAAATATTCCTCGGAGTAACGATGAAATAGA
GCAAACCTTACTGTTTTTCAGTTATTATATTTACCCTGAGAAAGAAATAA
CACATAAATCGATAATCGCAGACAAACTGAAAGTGACACAAGACAAATAT
AATATCATTTTGTTATGCCAAAAAGGTAACTCTGTTTTCTGCACCCAAAG
TGGAAACTGGTTAGCAAGACAAAAGATAATAAACATTACCTTTAACACGC
TATCTTTCAATCCACATCTTCATTCTATTCTATTGGACCTTATAAATAAT
CCGTCTTACGATTGGTTTCAGAAATATACGAGAAACCAGTACCATTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030740XLOC_030740Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048296-proteinTCONS_00048296-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048296-exon-scaffold_142-1491911889:529464..530231TCONS_00048296-exon-scaffold_142-1491911889:529464..530231Clytia hemisphaericaexon
TCONS_00048296-exon-scaffold_142-1510915933:529464..530231TCONS_00048296-exon-scaffold_142-1510915933:529464..530231Clytia hemisphaericaexon
TCONS_00048296-exon-scaffold_142-1575043694:529464..530231TCONS_00048296-exon-scaffold_142-1575043694:529464..530231Clytia hemisphaericaexon
TCONS_00048296-exon-scaffold_142-1491911889:533241..533325TCONS_00048296-exon-scaffold_142-1491911889:533241..533325Clytia hemisphaericaexon
TCONS_00048296-exon-scaffold_142-1510915933:533241..533325TCONS_00048296-exon-scaffold_142-1510915933:533241..533325Clytia hemisphaericaexon
TCONS_00048296-exon-scaffold_142-1575043694:533241..533325TCONS_00048296-exon-scaffold_142-1575043694:533241..533325Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:529464..533325 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0537211	0.374252	0.122049	0.0742915	0	0.141653	0.0663069	0.185692	0	0	0.0366894	0.146554	0.532691	0.218972	0.0335701	0.248134	0.381493	0	0	1.06528	0.779407	0.378988	0.344555	0.236589	0.739026	0.755389	0.161234	0.0611452	0.0622973
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048296 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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