TCONS_00048295 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048295
Unique NameTCONS_00048295
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2073

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048295 ID=TCONS_00048295|Name=TCONS_00048295|organism=Clytia hemisphaerica|type=transcript|length=2073bp
caaaaatgacgtttttCAACTTCCTCATCAATTGATGAGATTTGAAAAAG
GGGTGGAGTTTAGCTGAGTATAAAATGCGCAGAAATTTGGAGTAAAAATC
ACAATTCAAcagagaagaagaagaagaagaagaagtaaAGAATCCAAGCA
AAAACAAAGGTGGAAGCACTTCGAACAACTAATCGTAAAGATCTGCAGAA
TTATCCACAAGGCTATTCAGAAAAGTGAACGAAATGAAGTTTCCGATCGC
CATCTTTTTGATGGGCGCAACACTGGTTCAAGGTCTACTTCACATTTCCA
AATGTAACCCACAAAGCTATGTCAAAGTTGGATGTTTCAAAGATAATATC
GTTCCAAAGCGTGCACTGACAACACAACTTTTAAACAGAATGGATCCTCA
CAGTAAGAAGGGTGATGGTCAATTGATCGACCTGAATAATTACGGACAAT
CATTGAAAGAACTCGTCTGTAGATGCAGTCAACTTGCAAAAGCAAAAGGC
TTTGAATATTTTGCTATTCAATTCTATGGAGAATGTTGGGCAGGTCACCC
AAAGGACGCTACGAGACATGGTATCTCCAAAGGAGGATGCGTAGATGCGA
GACTGAAAGATGGAAGTTGTGGTCCAAGATCAACTGAATGCGCTGGAAAA
TGTGGCGAAAACTTCGTCTACAGAGTCGCTAAGCCAGTGGACGGCGGATG
GAGTTCATGGGGAAAATATGGTGCATGCGTAGGAAGATGTGGTTCAAAAG
GCGTTCAACGAAGATATAGAACTTGTAGCAAACCACGCCCTGTTGACGGC
GGTAAACCATGTGTTGGACCCAGGTTCTCTACCAAAACATGCCAGAAAGC
TGCTTGTCCAGGGAAATGGCAAAACTGGTCCTCATGGACACAATGCGTAC
AAACTAGACAAAGACGCTGTACTGTTAATGGTAAACCAGCTCCCCAAAGC
CAATGTGGTGGAAATCCAACAGAGAGAAGAACATGCCAGAAATGTCAAGG
AAACTGGGGAGGTTGGGGTGTTTGGAGTGACTGTGGAACACCAAATAAAC
CCTGTGGTACTGGGTCTAGAGTAAGACGTCGAGTCTGTTTACCTTTTCCT
GGATTCCACTGCCCTGGTAAAAGCGAGGAGAGAATATCATGCcaacatca
gtgtaagaaaacgTGGACAGCTTGGGGTGTTTGGGGTAGATGTAGCAAGT
CTTGTGGAGGAGGAATCAGGATCAGAGCCAGGAAATGTGTAGCTGTTGGC
ACCAATATTGTCGTCTCTGGTTGTCCTGGAGTATCTTCCCAACAGGGAGC
ATGTAATACACAAGTATGTCCAATCTGGATCTGGGGACCATGGAGTCGAT
GTAGTCGCACATGTGGTAGCGGGTCCCAAAACAGGGCCCAAATCTGTGTT
GTACCTGGAACATCACCGCCTAAGGGAACAACTGGATGTAGTGGCAAAGG
AAAAGTTGAAAGCAAATCATGTTTGATTCGAGGATGTCCTGTCTGGACCC
AATGGGGTTCTTGGTCGCCCTGTCCAAAATGCCGCCCATCAGGAACACCT
GCTCCAAAAAGAATCAGACAAAGACGCTGTGTTTATGAAGGATCGAACAT
CAATGCTGCAGGATGTCAAGGAGCTCGTATTGAGTTTCAAAACTGTATAA
CATTAAActGCGGTCCACTACCATGTTCTGTCAAGTGTTTACCAACAGAC
ATTGAAGGGAAAGTTTGTGTTCGAAACAACGCCGGTAGAGAATGGACAAT
GGCTAACGAATGTGCATTTAAACGATTGAGATGTTCCATGCCAGGCCTTA
CAATGAGACATGGAAAATGCCTAACACTACCAGGAGGTGGACTTGGACCA
ATTGGACCAGGAGGACCAATTCCGGTTGGACCAGCCCAATAGATGATCAG
CaaacaaattcaatttttttaacttaATTAACactgaaattgaaagaaaa
taatttatgttgaaattaacattttactagatacagtgctgcaaataggg
aaatttcagttggccggtaaattttcgcgtgtaacGAGCAGGGGGTCTGG
CGGAACCATCATTGTAGTTTGTT
Run BLAST on NCBI

protein sequence of TCONS_00048295-protein

>TCONS_00048295-protein ID=TCONS_00048295-protein|Name=TCONS_00048295-protein|organism=Clytia hemisphaerica|type=polypeptide|length=552bp
MKFPIAIFLMGATLVQGLLHISKCNPQSYVKVGCFKDNIVPKRALTTQLL
NRMDPHSKKGDGQLIDLNNYGQSLKELVCRCSQLAKAKGFEYFAIQFYGE
CWAGHPKDATRHGISKGGCVDARLKDGSCGPRSTECAGKCGENFVYRVAK
PVDGGWSSWGKYGACVGRCGSKGVQRRYRTCSKPRPVDGGKPCVGPRFST
KTCQKAACPGKWQNWSSWTQCVQTRQRRCTVNGKPAPQSQCGGNPTERRT
CQKCQGNWGGWGVWSDCGTPNKPCGTGSRVRRRVCLPFPGFHCPGKSEER
ISCQHQCKKTWTAWGVWGRCSKSCGGGIRIRARKCVAVGTNIVVSGCPGV
SSQQGACNTQVCPIWIWGPWSRCSRTCGSGSQNRAQICVVPGTSPPKGTT
GCSGKGKVESKSCLIRGCPVWTQWGSWSPCPKCRPSGTPAPKRIRQRRCV
YEGSNINAAGCQGARIEFQNCITLNCGPLPCSVKCLPTDIEGKVCVRNNA
GREWTMANECAFKRLRCSMPGLTMRHGKCLTLPGGGLGPIGPGGPIPVGP
AQ
Run BLAST on NCBI

transcript from alignment at scaffold_142:521187..525395+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048295 ID=TCONS_00048295|Name=TCONS_00048295|organism=Clytia hemisphaerica|type=transcript|length=4209bp|location=Sequence derived from alignment at scaffold_142:521187..525395+ (Clytia hemisphaerica)
caaaaatgacgtttttCAACTTCCTCATCAATTGATGAGATTTGAAAAAG
GGGTGGAGTTTAGCTGAGTATAAAATGCGCAGAAATTTGGAGTAAAAATC
ACAATTCAAcagagaagaagaagaagaagaagaagtaaAGAATCCAAGCA
AAAACAAAGGTAAATTGAAACGTTTTGTCTTTACCAAAATGTGAAGTAAG
AAAGCTATATCTTCTGGTGGATATCTTTAATTTTCTTCCTGCTTCACAGA
TTTCAAAATGCTTGTAAATAAAGGAAGATTCTTTTGCCCTAACCTTTGGC
AAACGTACGGAACTCAAGTGTGTAAACTCAAACACTTCAAAAGGCGATGA
AGATTCgtccttcaaaattttcttccttttctaAAACCAAACAGGTGGAA
GCACTTCGAACAACTAATCGTAAAGATCTGCAGAATTATCCACAAGGCTA
TTCAGAAAAGTGAACGAAATGAAGTTTCCGATCGCCATCTTTTTGATGGG
CGCAACACTGGTTCAAGGTAGGTTTGATTTATAGCCGTAGCAAAAAGGTG
TGGTGTAAGTTTGTGGGTTTGACTCCTAAACCGAGTCAAAGCAAAGATCT
CAAAATTGTACTTGATGCTTCTCTGCTTGATAATCAGCACTAAAAGAGAA
tggtcaagggtaagtggagaaaccTAGACAAAGAAGTGGTTCCCTTCCTT
ACCTTCGGATAGACAGCGAAGGAAAGGGGAACTTTTGGGTCAACCTCAAA
TCAACCTCGCAAACTTAGTTTTACTTATGGCCCATCCTTGTTTTTAATCA
CGatgttttcattgtttttcGATGGTGAAAGGTCATTAAGTGAATTCGGT
GAGAGGTTTAACCTTTAGAAGCTGGAAAATAAGAAATGCAAGCAAGCTAT
TTTAATGACGAAGAAAGATCCATTATCGGTCACATAACCATACATTTATC
TCAATCCAGGTCTACTTCACATTTCCAAATGTAACCCACAAAGCTATGTC
AAAGTTGGATGTTTCAAAGATAATATCGTTCCAAAGCGTGCACTGACAAC
ACAACTTTTAAACAGAATGGATCCTCACAGTAAGAAGGGTGATGGTCAAT
TGATCGACCTGAATAATTACGGACAATCATTGAAAGAACTCGTCTGTAGA
TGCAGTCAACTTGCAAAAGCAAAAGGCTTTGAATATTTTGCTATTCAATT
CTATGGAGAATGTTGGGCAGGTCACCCAAAGGACGCTACGAGACATGGTA
TCTCCAAAGGAGGATGCGTAGATGCGAGACTGAAAGATGGAAGTTGTGGT
CCAAGATCAACTGAATGCGCTGGAAAATGTGGCGAAAACTTCGTCTACAG
AGTCGCTAGTAAGTATATTCCTCCAAATGCTAATAATAGTTACTTATAAT
TTTCCATTCATGCGGGCGGTATTATTGTATCGTTCTTCATTTgaactttt
ccagaaaaaatttgaatattttgaatattggGTTAATATGGTTATAATAt
aaacatttttggaaatttactccCCCCCCCTCCAAATTTGTGACTTTTGG
CAGGtctgaccccccggacaagcatcagttgacccaaTGGACAaccaaaa
ttaccctcaaacagagtaaaattacccccaaacagagtaagtttaccccc
cggacaaggcaaattttgtaaatctttcactaccccggacactatatcct
ccacctccCAGAAAGAGCTCTATTTTTACTAAATTTgataatgaaaatca
aaaataaagtttaaacTAACTAGCCTCATCTCGGTGAAAAAACAATCAAC
TGTATAGCTGAAAAATTGATCTTTACGAATGATATGTGACTAGCAACTAG
AAACTAGCAATTTGAGTATTAAACTTTTATCGTAATTTAATTATTCTATT
TTCGTTTAACAGAGCCAGTGGACGGCGGATGGAGTTCATGGGGAAAATAT
GGTGCATGCGTAGGAAGATGTGGTTCAAAAGGCGTTCAACGAAGATATAG
AACTTGTAGCAAACCACGCCCTGTTGACGGCGGTAAACCATGTGTTGGAC
CCAGGTTCTCTACCAAAACATGCCAGAAAGCTGCTTGTCCAGGGAAATGG
CAAAACTGGTCCTCATGGACACAATGCGTACAAACTAGACAAAGACGCTG
TACTGTTAATGGTAAACCAGCTCCCCAAAGCCAATGTGGTGGAAATCCAA
CAGAGAGAAGAACATGCCAGAAATGTCAAGGAAACTGGGGAGGTTGGGGT
GTTTGGAGTGACTGTGGAACACCAAATAAACCCTGTGGTACTGGGTCTAG
AGTAAGACGTCGAGTCTGTTTACCTTTTCCTGGATTCCACTGCCCTGGTA
AAAGCGAGGAGAGAATATCATGCcaacatcagtgtaagaaaacgTGGACA
GCTTGGGGTGTTTGGGGTAGATGTAGCAAGTCTTGTGGAGGAGGAATCAG
GATCAGAGCCAGGAAATGTGTAGCTGTTGGCACCAATATTGTCGTCTCTG
GTTGTCCTGGAGTATCTTCCCAACAGGGAGCATGTAATACACAAGTATGT
CCAATCTGGATCTGGGGACCATGGAGTCGATGTAGTCGCACATGTGGTAG
CGGGTCCCAAAACAGGGCCCAAATCTGTGTTGTACCTGGAACATCACCGC
CTAAGGGAACAACTGGATGTAGTGGCAAAGGAAAAGTTGAAAGCAAATCA
TGTTTGATTCGAGGATGTCCTGTCTGGACCCAATGGGGTTCTTGGTCGCC
CTGTCCAAAATGCCGCCCATCAGGAACACCTGCTCCAAAAAGAATCAGAC
AAAGACGCTGTGTTTATGAAGGATCGAACATCAATGCTGCAGGATGTCAA
GGAGCTCGTATTGAGTTTCAAAACTGTATAACATTAAActgtaagtattt
ttttcttgaatttttcataaagtcTATTTCgaacatttcttttttcgatC
TACAACCGTACCATATAATACAAAGTTTGATAAGTAAACAGGAAAACAGA
TATACATTACAGTTTGGTTAGTTTAAGAACTCACTTATAATGACATAAGG
TTATGCGTTTTCCTTCTTAATACATTCTACTACGATTAAGTATATTGGCA
CGATATCACACTCTGGCTATATTATTTCCTAGGCGGTCCACTACCATGTT
CTGTCAAGTGTTTACCAACAGACATTGAAGGGAAAGTTTGTGTTCGAAAC
AACGCCGGTAGAGAATGGACAATGGCTAACGAATGTGCATTTAAACGATT
GAGATGTTCCATGCCAGGCCTTACAATGAGACATGGAAAATGCCTAAgta
agtcaattttttttaagagatcGAAGATTCCCTCGTCATTATTCAATTCA
CTTGTTttaaaataagagtgatatcgtttgcttactcgtcaatcctaatt
cacaagttttttatattgaattgacacatatgtggagcaagattggtcat
aAAGAGGAAAANTAATTCACAAGTTTtttacattggattgacacatatgt
ggagcaagattggtcataaagaggaaaataattttttttgcatatatcag
cataatataacaataggcagacaccgtcctgatatgaaatatgtgtctga
tatgaaacgggaacacttatgtaaaaataaaacctttaattgaAAAGTCA
TTATCATTTTTGGATTGAATagaaattcaaaccaaaaatGAAGTATGCGA
AGAAAANTATTTTTGGATTGAATagaaattcaaaccaaaaatGAAGTATG
TGAAGAAAATTTATCTAACTCTTGTAATCAGACTCAAAAGGTCCTTAGTA
TTTATGGTATTTGAGAagctaaaataaaaatcatgCTAGGATTTTTTAAG
TAGCTTTATCCTCAAATCAATTCTGAGGCCATccaaaaataatgaaacaa
aaataGTTTACCCATAACGACGTAAGAAAACTTACCTTAATGATGGTTTT
TCTTTTACAGCACTACCAGGAGGTGGACTTGGACCAATTGGACCAGGAGG
ACCAATTCCGGTTGGACCAGCCCAATAGATGATCAGCaaacaaattcaat
ttttttaacttaATTAACactgaaattgaaagaaaataatttatgttgaa
attaacattttactagatacagtgctgcaaatagggaaatttcagttggc
cggtaaattttcgcgtgtaacGAGCAGGGGGTCTGGCGGAACCATCATTG
TAGTTTGTT

Coding sequence (CDS) from alignment at scaffold_142:521187..525395+

>TCONS_00048295 ID=TCONS_00048295|Name=TCONS_00048295|organism=Clytia hemisphaerica|type=CDS|length=8295bp|location=Sequence derived from alignment at scaffold_142:521187..525395+ (Clytia hemisphaerica)
ATGAAGTTTCCGATCGCCATCTTTTTGATGGGCGCAACACTGGTTCAAGG
TCTACTTCACATTTCCAAATGTAACCCACAAAGCTATGTCAAAGTTGGAT
GTTTCAAAGATAATATCGTTCCAAAGCGTGCACTGACAACACAACTTTTA
AACAGAATGGATCCTCACAGTAAGAAGGGTGATGGTCAATTGATCGACCT
GAATAATTACGGACAATCATTGAAAGAACTCGTCTGTAGATGCAGTCAAC
TTGCAAAAGCAAAAGGCTTTGAATATTTTGCTATTCAATTCTATGGAGAA
TGTTGGGCAGGTCACCCAAAGGACGCTACGAGACATGGTATCTCCAAAGG
AGGATGCGTAGATGCGAGACTGAAAGATGGAAGTTGTGGTCCAAGATCAA
CTGAATGCGCTGGAAAATGTGGCGAAAACTTCGTCTACAGAGTCGCTAAG
CCAGTGGACGGCGGATGGAGTTCATGGGGAAAATATGGTGCATGCGTAGG
AAGATGTGGTTCAAAAGGCGTTCAACGAAGATATAGAACTTGTAGCAAAC
CACGCCCTGTTGACGGCGGTAAACCATGTGTTGGACCCAGGTTCTCTACC
AAAACATGCCAGAAAGCTGCTTGTCCAGGGAAATGGCAAAACTGGTCCTC
ATGGACACAATGCGTACAAACTAGACAAAGACGCTGTACTGTTAATGGTA
AACCAGCTCCCCAAAGCCAATGTGGTGGAAATCCAACAGAGAGAAGAACA
TGCCAGAAATGTCAAGGAAACTGGGGAGGTTGGGGTGTTTGGAGTGACTG
TGGAACACCAAATAAACCCTGTGGTACTGGGTCTAGAGTAAGACGTCGAG
TCTGTTTACCTTTTCCTGGATTCCACTGCCCTGGTAAAAGCGAGGAGAGA
ATATCATGCcaacatcagtgtaagaaaacgTGGACAGCTTGGGGTGTTTG
GGGTAGATGTAGCAAGTCTTGTGGAGGAGGAATCAGGATCAGAGCCAGGA
AATGTGTAGCTGTTGGCACCAATATTGTCGTCTCTGGTTGTCCTGGAGTA
TCTTCCCAACAGGGAGCATGTAATACACAAGTATGTCCAATCTGGATCTG
GGGACCATGGAGTCGATGTAGTCGCACATGTGGTAGCGGGTCCCAAAACA
GGGCCCAAATCTGTGTTGTACCTGGAACATCACCGCCTAAGGGAACAACT
GGATGTAGTGGCAAAGGAAAAGTTGAAAGCAAATCATGTTTGATTCGAGG
ATGTCCTGTCTGGACCCAATGGGGTTCTTGGTCGCCCTGTCCAAAATGCC
GCCCATCAGGAACACCTGCTCCAAAAAGAATCAGACAAAGACGCTGTGTT
TATGAAGGATCGAACATCAATGCTGCAGGATGTCAAGGAGCTCGTATTGA
GTTTCAAAACTGTATAACATTAAActGCGGTCCACTACCATGTTCTGTCA
AGTGTTTACCAACAGACATTGAAGGGAAAGTTTGTGTTCGAAACAACGCC
GGTAGAGAATGGACAATGGCTAACGAATGTGCATTTAAACGATTGAGATG
TTCCATGCCAGGCCTTACAATGAGACATGGAAAATGCCTAACACTACCAG
GAGGTGGACTTGGACCAATTGGACCAGGAGGACCAATTCCGGTTGGACCA
GCCCAATAGATGAAGTTTCCGATCGCCATCTTTTTGATGGGCGCAACACT
GGTTCAAGGTCTACTTCACATTTCCAAATGTAACCCACAAAGCTATGTCA
AAGTTGGATGTTTCAAAGATAATATCGTTCCAAAGCGTGCACTGACAACA
CAACTTTTAAACAGAATGGATCCTCACAGTAAGAAGGGTGATGGTCAATT
GATCGACCTGAATAATTACGGACAATCATTGAAAGAACTCGTCTGTAGAT
GCAGTCAACTTGCAAAAGCAAAAGGCTTTGAATATTTTGCTATTCAATTC
TATGGAGAATGTTGGGCAGGTCACCCAAAGGACGCTACGAGACATGGTAT
CTCCAAAGGAGGATGCGTAGATGCGAGACTGAAAGATGGAAGTTGTGGTC
CAAGATCAACTGAATGCGCTGGAAAATGTGGCGAAAACTTCGTCTACAGA
GTCGCTAAGCCAGTGGACGGCGGATGGAGTTCATGGGGAAAATATGGTGC
ATGCGTAGGAAGATGTGGTTCAAAAGGCGTTCAACGAAGATATAGAACTT
GTAGCAAACCACGCCCTGTTGACGGCGGTAAACCATGTGTTGGACCCAGG
TTCTCTACCAAAACATGCCAGAAAGCTGCTTGTCCAGGGAAATGGCAAAA
CTGGTCCTCATGGACACAATGCGTACAAACTAGACAAAGACGCTGTACTG
TTAATGGTAAACCAGCTCCCCAAAGCCAATGTGGTGGAAATCCAACAGAG
AGAAGAACATGCCAGAAATGTCAAGGAAACTGGGGAGGTTGGGGTGTTTG
GAGTGACTGTGGAACACCAAATAAACCCTGTGGTACTGGGTCTAGAGTAA
GACGTCGAGTCTGTTTACCTTTTCCTGGATTCCACTGCCCTGGTAAAAGC
GAGGAGAGAATATCATGCcaacatcagtgtaagaaaacgTGGACAGCTTG
GGGTGTTTGGGGTAGATGTAGCAAGTCTTGTGGAGGAGGAATCAGGATCA
GAGCCAGGAAATGTGTAGCTGTTGGCACCAATATTGTCGTCTCTGGTTGT
CCTGGAGTATCTTCCCAACAGGGAGCATGTAATACACAAGTATGTCCAAT
CTGGATCTGGGGACCATGGAGTCGATGTAGTCGCACATGTGGTAGCGGGT
CCCAAAACAGGGCCCAAATCTGTGTTGTACCTGGAACATCACCGCCTAAG
GGAACAACTGGATGTAGTGGCAAAGGAAAAGTTGAAAGCAAATCATGTTT
GATTCGAGGATGTCCTGTCTGGACCCAATGGGGTTCTTGGTCGCCCTGTC
CAAAATGCCGCCCATCAGGAACACCTGCTCCAAAAAGAATCAGACAAAGA
CGCTGTGTTTATGAAGGATCGAACATCAATGCTGCAGGATGTCAAGGAGC
TCGTATTGAGTTTCAAAACTGTATAACATTAAActGCGGTCCACTACCAT
GTTCTGTCAAGTGTTTACCAACAGACATTGAAGGGAAAGTTTGTGTTCGA
AACAACGCCGGTAGAGAATGGACAATGGCTAACGAATGTGCATTTAAACG
ATTGAGATGTTCCATGCCAGGCCTTACAATGAGACATGGAAAATGCCTAA
CACTACCAGGAGGTGGACTTGGACCAATTGGACCAGGAGGACCAATTCCG
GTTGGACCAGCCCAATAGATGAAGTTTCCGATCGCCATCTTTTTGATGGG
CGCAACACTGGTTCAAGGTCTACTTCACATTTCCAAATGTAACCCACAAA
GCTATGTCAAAGTTGGATGTTTCAAAGATAATATCGTTCCAAAGCGTGCA
CTGACAACACAACTTTTAAACAGAATGGATCCTCACAGTAAGAAGGGTGA
TGGTCAATTGATCGACCTGAATAATTACGGACAATCATTGAAAGAACTCG
TCTGTAGATGCAGTCAACTTGCAAAAGCAAAAGGCTTTGAATATTTTGCT
ATTCAATTCTATGGAGAATGTTGGGCAGGTCACCCAAAGGACGCTACGAG
ACATGGTATCTCCAAAGGAGGATGCGTAGATGCGAGACTGAAAGATGGAA
GTTGTGGTCCAAGATCAACTGAATGCGCTGGAAAATGTGGCGAAAACTTC
GTCTACAGAGTCGCTAAGCCAGTGGACGGCGGATGGAGTTCATGGGGAAA
ATATGGTGCATGCGTAGGAAGATGTGGTTCAAAAGGCGTTCAACGAAGAT
ATAGAACTTGTAGCAAACCACGCCCTGTTGACGGCGGTAAACCATGTGTT
GGACCCAGGTTCTCTACCAAAACATGCCAGAAAGCTGCTTGTCCAGGGAA
ATGGCAAAACTGGTCCTCATGGACACAATGCGTACAAACTAGACAAAGAC
GCTGTACTGTTAATGGTAAACCAGCTCCCCAAAGCCAATGTGGTGGAAAT
CCAACAGAGAGAAGAACATGCCAGAAATGTCAAGGAAACTGGGGAGGTTG
GGGTGTTTGGAGTGACTGTGGAACACCAAATAAACCCTGTGGTACTGGGT
CTAGAGTAAGACGTCGAGTCTGTTTACCTTTTCCTGGATTCCACTGCCCT
GGTAAAAGCGAGGAGAGAATATCATGCcaacatcagtgtaagaaaacgTG
GACAGCTTGGGGTGTTTGGGGTAGATGTAGCAAGTCTTGTGGAGGAGGAA
TCAGGATCAGAGCCAGGAAATGTGTAGCTGTTGGCACCAATATTGTCGTC
TCTGGTTGTCCTGGAGTATCTTCCCAACAGGGAGCATGTAATACACAAGT
ATGTCCAATCTGGATCTGGGGACCATGGAGTCGATGTAGTCGCACATGTG
GTAGCGGGTCCCAAAACAGGGCCCAAATCTGTGTTGTACCTGGAACATCA
CCGCCTAAGGGAACAACTGGATGTAGTGGCAAAGGAAAAGTTGAAAGCAA
ATCATGTTTGATTCGAGGATGTCCTGTCTGGACCCAATGGGGTTCTTGGT
CGCCCTGTCCAAAATGCCGCCCATCAGGAACACCTGCTCCAAAAAGAATC
AGACAAAGACGCTGTGTTTATGAAGGATCGAACATCAATGCTGCAGGATG
TCAAGGAGCTCGTATTGAGTTTCAAAACTGTATAACATTAAActGCGGTC
CACTACCATGTTCTGTCAAGTGTTTACCAACAGACATTGAAGGGAAAGTT
TGTGTTCGAAACAACGCCGGTAGAGAATGGACAATGGCTAACGAATGTGC
ATTTAAACGATTGAGATGTTCCATGCCAGGCCTTACAATGAGACATGGAA
AATGCCTAACACTACCAGGAGGTGGACTTGGACCAATTGGACCAGGAGGA
CCAATTCCGGTTGGACCAGCCCAATAGATGAAGTTTCCGATCGCCATCTT
TTTGATGGGCGCAACACTGGTTCAAGGTCTACTTCACATTTCCAAATGTA
ACCCACAAAGCTATGTCAAAGTTGGATGTTTCAAAGATAATATCGTTCCA
AAGCGTGCACTGACAACACAACTTTTAAACAGAATGGATCCTCACAGTAA
GAAGGGTGATGGTCAATTGATCGACCTGAATAATTACGGACAATCATTGA
AAGAACTCGTCTGTAGATGCAGTCAACTTGCAAAAGCAAAAGGCTTTGAA
TATTTTGCTATTCAATTCTATGGAGAATGTTGGGCAGGTCACCCAAAGGA
CGCTACGAGACATGGTATCTCCAAAGGAGGATGCGTAGATGCGAGACTGA
AAGATGGAAGTTGTGGTCCAAGATCAACTGAATGCGCTGGAAAATGTGGC
GAAAACTTCGTCTACAGAGTCGCTAAGCCAGTGGACGGCGGATGGAGTTC
ATGGGGAAAATATGGTGCATGCGTAGGAAGATGTGGTTCAAAAGGCGTTC
AACGAAGATATAGAACTTGTAGCAAACCACGCCCTGTTGACGGCGGTAAA
CCATGTGTTGGACCCAGGTTCTCTACCAAAACATGCCAGAAAGCTGCTTG
TCCAGGGAAATGGCAAAACTGGTCCTCATGGACACAATGCGTACAAACTA
GACAAAGACGCTGTACTGTTAATGGTAAACCAGCTCCCCAAAGCCAATGT
GGTGGAAATCCAACAGAGAGAAGAACATGCCAGAAATGTCAAGGAAACTG
GGGAGGTTGGGGTGTTTGGAGTGACTGTGGAACACCAAATAAACCCTGTG
GTACTGGGTCTAGAGTAAGACGTCGAGTCTGTTTACCTTTTCCTGGATTC
CACTGCCCTGGTAAAAGCGAGGAGAGAATATCATGCcaacatcagtgtaa
gaaaacgTGGACAGCTTGGGGTGTTTGGGGTAGATGTAGCAAGTCTTGTG
GAGGAGGAATCAGGATCAGAGCCAGGAAATGTGTAGCTGTTGGCACCAAT
ATTGTCGTCTCTGGTTGTCCTGGAGTATCTTCCCAACAGGGAGCATGTAA
TACACAAGTATGTCCAATCTGGATCTGGGGACCATGGAGTCGATGTAGTC
GCACATGTGGTAGCGGGTCCCAAAACAGGGCCCAAATCTGTGTTGTACCT
GGAACATCACCGCCTAAGGGAACAACTGGATGTAGTGGCAAAGGAAAAGT
TGAAAGCAAATCATGTTTGATTCGAGGATGTCCTGTCTGGACCCAATGGG
GTTCTTGGTCGCCCTGTCCAAAATGCCGCCCATCAGGAACACCTGCTCCA
AAAAGAATCAGACAAAGACGCTGTGTTTATGAAGGATCGAACATCAATGC
TGCAGGATGTCAAGGAGCTCGTATTGAGTTTCAAAACTGTATAACATTAA
ActGCGGTCCACTACCATGTTCTGTCAAGTGTTTACCAACAGACATTGAA
GGGAAAGTTTGTGTTCGAAACAACGCCGGTAGAGAATGGACAATGGCTAA
CGAATGTGCATTTAAACGATTGAGATGTTCCATGCCAGGCCTTACAATGA
GACATGGAAAATGCCTAACACTACCAGGAGGTGGACTTGGACCAATTGGA
CCAGGAGGACCAATTCCGGTTGGACCAGCCCAATAGATGAAGTTTCCGAT
CGCCATCTTTTTGATGGGCGCAACACTGGTTCAAGGTCTACTTCACATTT
CCAAATGTAACCCACAAAGCTATGTCAAAGTTGGATGTTTCAAAGATAAT
ATCGTTCCAAAGCGTGCACTGACAACACAACTTTTAAACAGAATGGATCC
TCACAGTAAGAAGGGTGATGGTCAATTGATCGACCTGAATAATTACGGAC
AATCATTGAAAGAACTCGTCTGTAGATGCAGTCAACTTGCAAAAGCAAAA
GGCTTTGAATATTTTGCTATTCAATTCTATGGAGAATGTTGGGCAGGTCA
CCCAAAGGACGCTACGAGACATGGTATCTCCAAAGGAGGATGCGTAGATG
CGAGACTGAAAGATGGAAGTTGTGGTCCAAGATCAACTGAATGCGCTGGA
AAATGTGGCGAAAACTTCGTCTACAGAGTCGCTAAGCCAGTGGACGGCGG
ATGGAGTTCATGGGGAAAATATGGTGCATGCGTAGGAAGATGTGGTTCAA
AAGGCGTTCAACGAAGATATAGAACTTGTAGCAAACCACGCCCTGTTGAC
GGCGGTAAACCATGTGTTGGACCCAGGTTCTCTACCAAAACATGCCAGAA
AGCTGCTTGTCCAGGGAAATGGCAAAACTGGTCCTCATGGACACAATGCG
TACAAACTAGACAAAGACGCTGTACTGTTAATGGTAAACCAGCTCCCCAA
AGCCAATGTGGTGGAAATCCAACAGAGAGAAGAACATGCCAGAAATGTCA
AGGAAACTGGGGAGGTTGGGGTGTTTGGAGTGACTGTGGAACACCAAATA
AACCCTGTGGTACTGGGTCTAGAGTAAGACGTCGAGTCTGTTTACCTTTT
CCTGGATTCCACTGCCCTGGTAAAAGCGAGGAGAGAATATCATGCcaaca
tcagtgtaagaaaacgTGGACAGCTTGGGGTGTTTGGGGTAGATGTAGCA
AGTCTTGTGGAGGAGGAATCAGGATCAGAGCCAGGAAATGTGTAGCTGTT
GGCACCAATATTGTCGTCTCTGGTTGTCCTGGAGTATCTTCCCAACAGGG
AGCATGTAATACACAAGTATGTCCAATCTGGATCTGGGGACCATGGAGTC
GATGTAGTCGCACATGTGGTAGCGGGTCCCAAAACAGGGCCCAAATCTGT
GTTGTACCTGGAACATCACCGCCTAAGGGAACAACTGGATGTAGTGGCAA
AGGAAAAGTTGAAAGCAAATCATGTTTGATTCGAGGATGTCCTGTCTGGA
CCCAATGGGGTTCTTGGTCGCCCTGTCCAAAATGCCGCCCATCAGGAACA
CCTGCTCCAAAAAGAATCAGACAAAGACGCTGTGTTTATGAAGGATCGAA
CATCAATGCTGCAGGATGTCAAGGAGCTCGTATTGAGTTTCAAAACTGTA
TAACATTAAActGCGGTCCACTACCATGTTCTGTCAAGTGTTTACCAACA
GACATTGAAGGGAAAGTTTGTGTTCGAAACAACGCCGGTAGAGAATGGAC
AATGGCTAACGAATGTGCATTTAAACGATTGAGATGTTCCATGCCAGGCC
TTACAATGAGACATGGAAAATGCCTAACACTACCAGGAGGTGGACTTGGA
CCAATTGGACCAGGAGGACCAATTCCGGTTGGACCAGCCCAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030739XLOC_030739Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048295-exon-scaffold_142-1491911889:521187..521345TCONS_00048295-exon-scaffold_142-1491911889:521187..521345Clytia hemisphaericaexon
TCONS_00048295-exon-scaffold_142-1510915933:521187..521345TCONS_00048295-exon-scaffold_142-1510915933:521187..521345Clytia hemisphaericaexon
TCONS_00048295-exon-scaffold_142-1575043694:521187..521345TCONS_00048295-exon-scaffold_142-1575043694:521187..521345Clytia hemisphaericaexon
TCONS_00048295-exon-scaffold_142-1491911889:521581..521703TCONS_00048295-exon-scaffold_142-1491911889:521581..521703Clytia hemisphaericaexon
TCONS_00048295-exon-scaffold_142-1510915933:521581..521703TCONS_00048295-exon-scaffold_142-1510915933:521581..521703Clytia hemisphaericaexon
TCONS_00048295-exon-scaffold_142-1575043694:521581..521703TCONS_00048295-exon-scaffold_142-1575043694:521581..521703Clytia hemisphaericaexon
TCONS_00048295-exon-scaffold_142-1491911889:522146..522544TCONS_00048295-exon-scaffold_142-1491911889:522146..522544Clytia hemisphaericaexon
TCONS_00048295-exon-scaffold_142-1510915933:522146..522544TCONS_00048295-exon-scaffold_142-1510915933:522146..522544Clytia hemisphaericaexon
TCONS_00048295-exon-scaffold_142-1575043694:522146..522544TCONS_00048295-exon-scaffold_142-1575043694:522146..522544Clytia hemisphaericaexon
TCONS_00048295-exon-scaffold_142-1491911889:523099..524076TCONS_00048295-exon-scaffold_142-1491911889:523099..524076Clytia hemisphaericaexon
TCONS_00048295-exon-scaffold_142-1510915933:523099..524076TCONS_00048295-exon-scaffold_142-1510915933:523099..524076Clytia hemisphaericaexon
TCONS_00048295-exon-scaffold_142-1575043694:523099..524076TCONS_00048295-exon-scaffold_142-1575043694:523099..524076Clytia hemisphaericaexon
TCONS_00048295-exon-scaffold_142-1491911889:524319..524483TCONS_00048295-exon-scaffold_142-1491911889:524319..524483Clytia hemisphaericaexon
TCONS_00048295-exon-scaffold_142-1510915933:524319..524483TCONS_00048295-exon-scaffold_142-1510915933:524319..524483Clytia hemisphaericaexon
TCONS_00048295-exon-scaffold_142-1575043694:524319..524483TCONS_00048295-exon-scaffold_142-1575043694:524319..524483Clytia hemisphaericaexon
TCONS_00048295-exon-scaffold_142-1491911889:525147..525395TCONS_00048295-exon-scaffold_142-1491911889:525147..525395Clytia hemisphaericaexon
TCONS_00048295-exon-scaffold_142-1510915933:525147..525395TCONS_00048295-exon-scaffold_142-1510915933:525147..525395Clytia hemisphaericaexon
TCONS_00048295-exon-scaffold_142-1575043694:525147..525395TCONS_00048295-exon-scaffold_142-1575043694:525147..525395Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048295-proteinTCONS_00048295-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:521187..525395 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0951656	0.0556809	0.323254	0.0632507	0.821351	0.649043	0.856453	1.62651	39.3585	20.6018	54.6869	63.4305	168.52	86.5783	32.5742	48.3531	8.63001	74.879	4.39048	7.15613	0.128816	0.350064	2.22595	1.09122	0.306525	0.182378	1.69638	0.584907	7.4361	10.6756
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
Blast
[Close]
BLAST of TCONS_00048295 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.986e-35
Identity = 110/311 (35.37%), Postives = 133/311 (42.77%), Query Frame = 3 
Query:  687 VDGGWSSWGKYGACVGRCGSKGVQRRYRTCSKPRPVDGGKPCVGPRFSTKTCQKAACP--GKWQNWSSWTQCV-------QTRQRRCTVNGKPAPQSQCGGNPTERRTCQKCQGN------WGGWGVWSDCGTPNKPCGTGSRVRRRVC-LPFPGF---HCPGKSEERISCQHQ---CKKTWTAWGVWGRCSKSCGGGIRIRARKCVAVGTNIVVSGCPGVSSQQGACNTQVCPIW-IWGPWS---RCSRTCGSGSQNRAQICVVPGTSPPKGTTGCSGKGKVESKSCLIRGCPVWTQWGSWSPCPKCRPS 1541
            V GG+S W  + AC   CG KG+Q+R R C++P P +GGKPC G     + CQ   CP  G W  WS W +C        QTR R C       P  Q GG P E    +    N       G W  W   GT ++ CG G++ R R+C  P P F   +C G   +   C  +       W  W  W  CS SCGGG R R R C           C G   Q   CN+  CP    W PWS    CSRTC  G   R + C  P   P  G   C G    + + C    CPV   WGSW    +C  S
Sbjct: 4528 VHGGFSQWSAWRACSVTCG-KGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCN-----NPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNP--PPSNGGRACGGPDS-QIQRCNTDMCPVDGSWGSWHSWSQCSAS 4829

HSP 2 Score: 124.79 bits (312), Expect = 4.972e-29
Identity = 101/296 (34.12%), Postives = 125/296 (42.23%), Query Frame = 3 
Query:  684 PVDGGWSSWGKYGACVGRCGSKGVQRRYRTCSKPRPVDGGKPCVGPRFSTKTCQKAACP--GKWQNWSSWTQC-------VQTRQRRCTVNGKPAPQ---SQCGGNPTERRTCQK----CQGNWGGWGVWSDCGTPNKPCGTGSRVRRRVCL-PFPGF---HCPGKSEERISCQHQ---CKKTWTAWGVWGRCSKSCGGGIRIRARKCVAVGTNIVVSGCPGVSSQQGACNTQVCPI---W-IWGPWSRCSRTCGSGSQNRAQICVVPGTSPPKGTTGCSGKGKVESKSCLIRGCP 1490
            PVDG WS W  +  C   CG +G Q R RTC+ P    GG+PC G       C    CP  G W  W  W  C        QTR R C     P P    S C G  T+ + C +      G W  W  WS C      CG G+R R R C  P P +    C G   +   C          W+ W  WG CS++C GG   R R C     +     C G  SQ   CNT +CP+   W  W  WS+CS +CG G + R ++C  P   P KG   C G    +   C ++ CP
Sbjct: 4584 PVDGSWSEWSLWEECTRSCG-RGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLC---NNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSV---SCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHP--VPVKGGRPCPGD-TTQVTRCNVQACP 4869
The following BLAST results are available for this feature:
BLAST of TCONS_00048295 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN11.986e-3535.37Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
back to top