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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048293 ID=TCONS_00048293|Name=TCONS_00048293|organism=Clytia hemisphaerica|type=transcript|length=288bp
CAAAGTGCTGCGTCACACCCTGGTCGATCCTTGTTCCAAGCAGACATTGT
ATTAACACCAGAATTGCGAAAATATTTACGACAGCAAGATAACAGAAATC
CAACGGGGAAAGTTGCTGACGTGGTGCAGACAAGAAAATGGCCCAATGCT
GTCGTTCCTTATGTTTTCAAGTCTGGATTTGCTTATGGTGACGTCACTCG
TCGAGCGATGGCGGATATTGAAAAACATTCGTGTATTCGTTTCAAGAAGC
GAACAAATGAAGCTGGATATATTCAATTCGTCACCAGT Run BLAST on NCBI transcript from alignment at scaffold_142:437099..439761+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048293 ID=TCONS_00048293|Name=TCONS_00048293|organism=Clytia hemisphaerica|type=transcript|length=2663bp|location=Sequence derived from alignment at scaffold_142:437099..439761+ (Clytia hemisphaerica)
CAAAGTGCTGCGTCACACCCTGGTAAGTAGAAATAGCAAAAAAAGCTGCT
TTCCCAGTTAGTTATACGATCCCATGATCGTACAAGGATAATGTCCTCTA
AAGGTTCTCAAAGGCCTCGAAAATACTTCAAGATCAAACATCAAAGCCCT
ACCCTAATTATTCATAAAAGTTCATAGACAATAATTTGGTATTACTGAAG
GTATTACGCATGGTTTCTTCAGTGCagaatttcattgttttgagTAAATC
TGTTATCCCTATTACTGCAAGTTTGAAGAtctaaaaaatacataaacaGG
CAATTAACATTTTTCTCTTGACCATTTTAGCAATTAAGTTTAGGCCATAT
CGTGAACTATTTGATTACCCCTTTAACATCGAGACAGATTGTTTCTCCAT
CTTAATTCTAAATCCTCCATGACCTTAAGCTTGACGAAAAAATTTCTGCC
TCGATATAAGTGATGGGATTATTTTGTCAATCTGTTACTTAGTAGCAATA
AAAATCGATTGTACTTTGTAAAATCTGCCCTTAAGATAAACAATTTGTTT
GTTAATTAAAAGTCAAGTGCTTAAACGATGGGTCAGCCATTATTCAATTA
AAGTAAAAGGTAATGATTATACAAAAAGATCATCGTTtttaattacgtca
tttttgataaattgttatacaaattctgaaaatggaTCCTGATAAATCAA
AACTGTTAGAGTGAATGATTAATTGATTACGAATAATTCTATCATATCCA
CCTGTTTTACTGCGTATTTGGCATTTTGTTTAATCATTCCGTAAGCTGGG
AACTTCAAACGAGTCTTTTTATAGTTTAATTTGTAACAGCTTTCCAGTCA
AATCAGTCCATATGAAATACTGTATATCTGTCAATCGTCCCCCTTGTGAA
CTTTTAAGCTTGACCGTGCACTAAGATAGCGGTGCAATTATCACACCGGT
AATGCCTGACTATACCCCAGAGGCACTGACCTTGGCAGCTGACGAGGAGC
CGTTAGAGTTTGAAAACTCAGATATAAGTGTTttgtaaatttgggaccct
gtcagaacgaaaaaagTTCTTCCATTTTCACCCTAAAAGTGGCAAaagtc
ccccccccctcccGGGTGACTGAGTCATAGAGTTCATAGCatggaaagaa
aaaatgaatctTTTGTCACAAACTGTGAACtgattttcaattcaaaattc
aacTTTCCATACAATTTAGGTCGATCCTTGTTCCAAGCAGACATTGTATT
AACACCAGAATTGCGAAAATATTTACGACAGCAAGATAACAGAAATCCAA
CGGGGAAAGTTGCTGACGTGGTGCAGACAAGAAAATGGCCCAATGCTGTC
GTTCCTTATGTTTTCAAGTCTGGATTTGGTAAGTAAACTGATTCAAGTAG
CAATTAAACTAAAAACATGTTCCATAGGGGAATTCTCCAATCAGCCTAGT
TCACTGACATGAATTGACCGTAGCATAAAGGTAGACCATCCAGCTTGATG
ACTGCCAACTGCTAAGTAAAGAAGTTGAAGAAATTTAAGGTAAGGAATGA
CACCGTCCTCCACAAACTGTGTAGTTAAATGGAAAGGAAACCTTTTAATA
GCCCTCTACTACACCCCatcgctgggaccccagccccactgtgAAATTGG
GTAAAAAATTCGTCCCCAGggagaaaataccctggaatttcagcccaact
tggaaattgactttgattttatctccacttgaaattcaatgtttaaaaat
tgcactctaaaaccatccaCACTGGATTTTTGAGCCTTGGAACAAAGTAA
TTGCtctccccattgggatttcaataggactTTGTATCCTCGCCGATATG
AAGTTCCactgggctgtgagacaggggtgttctacTAAAGGGATGTACAG
CAGGACTGTTTTATCCAACTTTAGAATCTTTAGAAATATCAACATTATAC
TATGTTTTCTACACAGCTTATGGTGACGTCACTCGTCGAGCGATGGCGGA
TATTGAAAAACATTCGTGTATTCGTTTCAAGAAGCGAACAAATGAAGCTG
GATATATTCAATTCGTCACCAGTAGAGGGTATGTAAGAAAGCTTTTGAAT
CCTGAATTATTATTTTCAGGTTATATTTTTGGGTTGAAAAGTGTAAAAAC
AAAGCTTCTCCTTATTTGAAACCAGCATTTTGGATAGCTTTTATTGGAAG
AGTGTATTTGATAATTCTGGGTGtgacccattgagtttaaagcccgaagg
gctagagttcaatctctaacctttttcaggcaagaaaaagtgaagccttt
gtttacgattgatatttttttagaaatttagcggttaattttagtttcaa
tctgtcatttgtgtaaaaaccaggcgagccgctcaaggcagcgcaacttt
ggtagaatttgttggcttcaaatcctaccaaggagattgacttttagccc
tttgggcttatacttcattggtgtGACCTACTATTCATGATAATTGCAAT
GTGTTCATAACNAGAATCTTTAGAAATATCAACATTATACTATGTTTTCT
ACACAGCTTATGGTGATGTCACTCGTCGAGCGATGGCGGATATTGAAAAA
CATTCGTGTATTCGTTTCAAGAAGCGAACAAATGAAGCTGGATATATTCA
ATTCGTCACCAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048293-exon-scaffold_142-1491911889:437099..437120 | TCONS_00048293-exon-scaffold_142-1491911889:437099..437120 | Clytia hemisphaerica | exon |
| TCONS_00048293-exon-scaffold_142-1510915933:437099..437120 | TCONS_00048293-exon-scaffold_142-1510915933:437099..437120 | Clytia hemisphaerica | exon |
| TCONS_00048293-exon-scaffold_142-1575043694:437099..437120 | TCONS_00048293-exon-scaffold_142-1575043694:437099..437120 | Clytia hemisphaerica | exon |
| TCONS_00048293-exon-scaffold_142-1491911889:438318..438476 | TCONS_00048293-exon-scaffold_142-1491911889:438318..438476 | Clytia hemisphaerica | exon |
| TCONS_00048293-exon-scaffold_142-1510915933:438318..438476 | TCONS_00048293-exon-scaffold_142-1510915933:438318..438476 | Clytia hemisphaerica | exon |
| TCONS_00048293-exon-scaffold_142-1575043694:438318..438476 | TCONS_00048293-exon-scaffold_142-1575043694:438318..438476 | Clytia hemisphaerica | exon |
| TCONS_00048293-exon-scaffold_142-1491911889:439065..439109 | TCONS_00048293-exon-scaffold_142-1491911889:439065..439109 | Clytia hemisphaerica | exon |
| TCONS_00048293-exon-scaffold_142-1510915933:439065..439109 | TCONS_00048293-exon-scaffold_142-1510915933:439065..439109 | Clytia hemisphaerica | exon |
| TCONS_00048293-exon-scaffold_142-1575043694:439065..439109 | TCONS_00048293-exon-scaffold_142-1575043694:439065..439109 | Clytia hemisphaerica | exon |
| TCONS_00048293-exon-scaffold_142-1491911889:439700..439761 | TCONS_00048293-exon-scaffold_142-1491911889:439700..439761 | Clytia hemisphaerica | exon |
| TCONS_00048293-exon-scaffold_142-1510915933:439700..439761 | TCONS_00048293-exon-scaffold_142-1510915933:439700..439761 | Clytia hemisphaerica | exon |
| TCONS_00048293-exon-scaffold_142-1575043694:439700..439761 | TCONS_00048293-exon-scaffold_142-1575043694:439700..439761 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:437099..439761 + |
Blast
The following BLAST results are available for this feature:
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