TCONS_00048279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048279
Unique NameTCONS_00048279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1781

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048279 ID=TCONS_00048279|Name=TCONS_00048279|organism=Clytia hemisphaerica|type=transcript|length=1781bp
GAAAGGCATCAAGCTTTAATTCTTAATTCATCAAGAAGATTGATCAAGAA
AGAAATTCAAGATGAAGCTGTTTTTCCTCGTGCTTTCCTTATTGGTGGTC
GAACAAAGATGTCAAGTATCCGAACAACAATTCCAATCCGTCAAATCAAC
ATTGGCTGCACTGTCACGTCAAGTTATGCTCCaacaatttttcactgaaa
caCGTGTCCGTACTGAAGGTCAATCAGGTTTAAAAGTCAACCGACAACGA
AGCAATGGTTTAAAAAACTACCATATCAACACCCATACTGGTAGATCCGC
AGCTGCAATTCACGAGCATGCTAATAATGACCGTACTGTAGGAATGGGAG
AACTTACAGCTGTCCTTAATGGGATTGAATTTAAGACAAGACACAACGAT
TACCGATTGTACATGCCTCACCGAACATCTCAAAACTTCAATGCGTACGA
GAAAGTACCATTCCCTGATGTACCACCACAAGTCGAAGCTAAAGAAACCA
TCGATGAACAAATCGCCGAAATGAGAGAATACTTCAAAGCTTGGAGAAAT
CAAGATCCAAAACACCGCGACTATAAACCATACTTCAAAGCTACGTTGTG
CTACTTAGAAGGTGCCTGGACTGCATCAGCACAAAAAATTGACGAGCCTT
TTGCATCTGATCGTCATTTTGTAGATGCAAAATCATGGATGGAACTTCAC
GAGAAATCAAGATATATTGCTTACTCTGGAACCAAATCGCGACAAGAGAA
TCTCTCGTTCTTACCAACCAAAATTATGGGTTTAGTCAACGATACAATCC
CTAACTTTGCCCAATGGAATTATCGTATCATGTGTCATCCACTGAAACGT
CACTTGCCAACCAAACGATTGAGAGTTATAGAAGATTTATCAGCTCGCAT
GAGGAACAACAAAGACATCCTGAGACACGCTCTCTCACGATCTGCGCGTT
ACCAACTCAACACTCAAGATCAAGATACTTTCAGAGAAAGACCAGAAAGC
TGGAAAACTCTCCTTGATGAACTCATGGAAGAAATCCCTGGCAAAGATAA
TTATCAAGttgatTTGGAGGATGAAGGTTTAGATGGTAAAGCAATGCAAT
TGGATGGAAGTAAACTCAATGCTGGTTATTATCACAGATGGTTCACTATT
GGTGCAGATGCTATGGGATCGGTCAAACAACATCGTGGTTACAATGATGA
CTACATGTTTGCTGCTCTCAATACACAAGAGAAGATTGCCGGCGTTGAAT
TCaacaaatgtgtcaaaaataagGGAAATAAGGGAAAAAAGGAATGCCAA
ATGTTCAGACAAAAATGGTCATATGCAATCCCATTGGAGATCATCTACAT
GACACCGTTGTATAAATGGAATCCTTACAAATTGAAGCACCATGGTGACC
AAACAACTGCTAATCTGAAAATCATCAATGGCAACGGCAAACGAAATGGT
AATTGCGCAGCAGGCGCTGCCAAGGCTTATACTGGCATCAACAGCCGTAA
TTTCTACATGACACCTGCAGCATTCTACTCTGGTGCTTCTGTGGAGAGCA
GTGCAGCTGATACAGCACGTGGTGTTACGTGTGTATTGGATCAAGATGGC
GTCGAAAGACAAGTCAGAGCCGCTGGAACACACATTTTCCTACCACAAAT
CAAAGATGTTGGTGTTTTGAGAACCAGATATCCAATCTTTCCAGTTCACG
GTGAAGGATCATCTGTATGGAAAGAATTGAACGCTGTCAGAGAAGTCACC
ATGAATGAAGAACAATGGCAAAAGATGTACT
Run BLAST on NCBI

transcript from alignment at scaffold_142:194624..198825+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048279 ID=TCONS_00048279|Name=TCONS_00048279|organism=Clytia hemisphaerica|type=transcript|length=4202bp|location=Sequence derived from alignment at scaffold_142:194624..198825+ (Clytia hemisphaerica)
GAAAGGCATCAAGCTTTAATTCTTAATTCATCAAGAAGATTGATCAAGAA
AGAAATTCAAGGTAAATAAattatataatatatttttttgtctaAAGTTT
TACGGTAAGGTCTGTGggaaataactttttttaagtcATTTCGAAATATC
ATTAGCCGAGAAAGTTTATCGACTTCTCTTTCTGATAAGAGCCTGATTGA
TGGGAAAGTACTAATCCATATAATGAAATACTCAAAACTTTGCCTCTTAA
ATTACAGCTGATAGAATCATTGGGACACTCttccaaaagaaaaatcaaat
tatgtTTTCATATCGATGGGAACTCAGTAGCGTAGATAggaggaggggcg
caaaatttgtgtaggggAGCAGATTTGTGTGGTACTGTAATGATCTTTTT
ACATTATAAatagataattactgtgtcataaaaatctgctctcttaCAAA
AAAAGTATGCACCTCTGCTGGCTACGCTACTGGGACTAAGGACAAATGGG
GGTGAAAAGCCACGCTTTTGTATGTTTAGTTTAGGGGATACCCGTCTAGT
TGTAACCTTATGTATACACGGTGACATTATAGTTAGAAAGGGAACATTCA
TTAAACGATGCGATATAGATTAATAGGGGAactcatagtgtcctcccccc
cccctttataaaaaGGGGGGGAAATCAGTTTTCCACTTTTGAATGGGTGA
GGGggggaaatgaaaatttgaatagtaaagggggaaaaaaaagagggggg
aaaacatcgatagttggcaaatttggtggggggaagtgtgaaatcacttt
aattttatctcagcaaccaaggtcagtccacatgatatcatgtgattaga
tcatgattgaaaattaaccaattttcgttctatttatgtctagtattcct
tttgcagctaAATTTTACGtctgtgtcaggttgaaatttgagaaaacata
cgggtatatgggggggaaatgatattttcagaattttctggggggaaagc
aaaaaagaggggggaaactaaaaaactgaaaagtcatagggggaaaaaaa
agaggggggagatttaaaaaaatcaaaaatttggtggggggaacaaaccc
tggaggacactatggaaCTCCGGATACCTTGATAGTAAGACCTTGAAAAC
TTACATAATACAAACAGAATcttaataaaatatttcaaaatattacaaat
agCAAGCCAATTATTAGTGTGAAGATTTTGATCACAGAATTGCACAACAA
GGGACAGTATTCGAAACCCCAGCAATTCCAGCAAAGGGTGTCATGGAACG
TATGACGATAGACTCTCTTCCTTCACTGACGCTCTGATTAGGcgtgattt
tgaatgtccggagtgtcaactgatgcttgtacGGGGGTGAGATCTGTTGT
CCCaggggtcaaaattcacaatgttcgAGGGGTAAATTTCcgaaaaatgt
tatatcctcaaCCCGGGGAGGGGGTggtttctggaagagcccattactCA
AATGGctcaaatatttgaaaattcaatcaaactttttacaTTATCAGATG
AAGCTGTTTTTCCTCGTGCTTTCCTTATTGGTGGTCGAACAAAGATGTCA
AGTATCCGAACAACAATTCCAATCCGTCAAATCAACATTGGCTGCACTGT
CACGTCAAGTTATGCTCCaacaatttttcactgaaacaCGTGTCCGTACT
GAAGGTCAATCAGGTTTAAAAGTCAACCGACAACGAAGCAATGGTTTAAA
AAACTACCATATCAACACCCATACTGGTAGATCCGCAGCTGCAATTCACG
AGCATGCTAATAATGACCGTACTGTAGGAATGGGAGAACTTACAGCTGTC
CTTAATGGGATTGAATTTAAGACAAGACACAACGATTACCGATTGTACAT
GCCTCACCGAACATCTCAAAACTTCAATGCGTACGAGAAAGTACCATTCC
CTGATGTAAGAATATAAATGTTTCTTTATCttaatattgaaaatttaatt
ttagacCCGCGGAAATGTATAATTTTGCTACGTTTCTGTTTATCCtctac
ccagctgacacacaacgttgtttcaacgtttatttaacgttcacaatgtc
catataacgttagataaacgttgaaataacgttgtgtcaGCTGGGtgcga
aaagagtttcttacAGAGGAAGTATATATCTAAAGAGTTCTGCAATTCAG
ACTATAGATTTGCATGCTGTCAAGTCATGTATTTTTCTCTGTTGTTGAAT
TAAATTTTCAGAAGTTCCAGAGTGTTCTCAAAGTCAAGAAAAAAATGCTT
TCCTCTCGAAAGCATAGATCTTCAATTACACtctttataaaatgttttta
atgcCTCTTACAGTATTCTTCATCAGTTTGAATTTATCATGATGTTATTT
TCCAGGTACCACCACAAGTCGAAGCTAAAGAAACCATCGATGAACAAATC
GCCGAAATGAGAGAATACTTCAAAGCTTGGAGAAATCAAGATCCAAAACA
CCGCGACTATAAACCATACTTCAAAGCTACGTTGTGCTACTTAGAAGGTG
CCTGGACTGCATCAGCACAAAAAATTGACGAGCCTTTTGCATCTGATCGT
CATTTTGTAGATGCAAAATCATGGATGGAACTTCACGAGAAATCAAGATA
TATTGCTTACTCTGGAACCAAATCGCGACAAGAGAATCTCTCGTTCTTAC
CAACCAAAATTATGGGTTTAGTCAACGATACAATCCCTAACTTTGCCCAA
TGGAATTATCGTATCATGTGTCATCCACTGAAACGTCACTTGCCAACCAA
ACGATTGAGAGTTATAGAAGATTTATCAGCTCGCATGAGGAACAACAAAG
ACATCCTGAGACACGCTCTCTCACGATCTGCGCGTTACCAACTCAACACT
CAAGATCAAGATACTTTCAGAGAAAGACCAGAAAGCTGGAAAACTCTCCT
TGATGAACTCATGGAAGAAATCCCTGGCAAAGATAATTATCAAGGTACAA
CATTATCATtattaatttgtcataattccATAACTCATAAAAACAttcca
agctggcacacaacgttttttcaacgtttatctaatgttcacaacgtcca
aataacgttagattaacgttgaaacaacgttgtgtaccaagTGGGTTAGC
GTCTCgtacaaaataatgaaaaagttCGGGCAGTGATTTGCACACGAAAG
TTCCCTTATCTCCAAAACTAAAACTAGTACTCTTTGGCTAATGGTGGATT
TGTCgataaaaattgactttcatctTTTCtcatccttttatttcatttca
aCCGGCACAAAGCTGTTTTTTAATGTCCATCTAACGTTTATGACAGTCTC
TATAAGATTACATTATTGTCGATACGCAGTGTGCCGGGATTCAggtcaaa
ataaaattaacaacTTTAAAAGCTTATACCCTGTCTCAATTTTCTgagta
aaaatatatatatatcttttcattttcagttgatTTGGAGGATGAAGGTT
TAGATGGTAAAGCAATGCAATTGGATGGAAGTAAACTCAATGCTGGTTAT
TATCACAGATGGTTCACTATTGGTGCAGATGCTATGGGATCGGTCAAACA
ACATCGTGGTTACAATGATGACTACATGTTTGCTGCTCTCAATACACAAG
AGAAGATTGCCGGCGTTGAATTCaacaaatgtgtcaaaaataagGGAAAT
AAGGGAAAAAAGGAATGCCAAATGTTCAGACAAAAATGGTCATATGCAAT
CCCATTGGAGATCATCTACATGACACCGTTGTATAAATGGAATCCTTACA
AATTGAAGCACCATGGTGACCAAACAACTGCTAATCTGAAAATCATCAAT
GGCAACGGCAAACGAAATGGTAATTGCGCAGCAGGCGCTGCCAAGGCTTA
TACTGGCATCAACAGCCGTAATTTCTACATGACACCTGCAGCATTCTACT
CTGGTGCTTCTGTGGAGAGCAGTGCAGCTGATACAGCACGTGGTGTTACG
TGTGTATTGGATCAAGATGGCGTCGAAAGACAAGTCAGAGCCGCTGGAAC
ACACATTTTCCTACCACAAATCAAAGATGTTGGTGTTTTGAGAACCAGAT
ATCCAATCTTTCCAGTTCACGGTGAAGGATCATCTGTATGGAAAGAATTG
AACGCTGTCAGAGAAGTCACCATGAATGAAGAACAATGGCAAAAGATGTA
CT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030728XLOC_030728Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048279-exon-scaffold_142-1491911889:194624..194684TCONS_00048279-exon-scaffold_142-1491911889:194624..194684Clytia hemisphaericaexon
TCONS_00048279-exon-scaffold_142-1510915933:194624..194684TCONS_00048279-exon-scaffold_142-1510915933:194624..194684Clytia hemisphaericaexon
TCONS_00048279-exon-scaffold_142-1575043694:194624..194684TCONS_00048279-exon-scaffold_142-1575043694:194624..194684Clytia hemisphaericaexon
TCONS_00048279-exon-scaffold_142-1491911889:196171..196578TCONS_00048279-exon-scaffold_142-1491911889:196171..196578Clytia hemisphaericaexon
TCONS_00048279-exon-scaffold_142-1510915933:196171..196578TCONS_00048279-exon-scaffold_142-1510915933:196171..196578Clytia hemisphaericaexon
TCONS_00048279-exon-scaffold_142-1575043694:196171..196578TCONS_00048279-exon-scaffold_142-1575043694:196171..196578Clytia hemisphaericaexon
TCONS_00048279-exon-scaffold_142-1491911889:197029..197617TCONS_00048279-exon-scaffold_142-1491911889:197029..197617Clytia hemisphaericaexon
TCONS_00048279-exon-scaffold_142-1510915933:197029..197617TCONS_00048279-exon-scaffold_142-1510915933:197029..197617Clytia hemisphaericaexon
TCONS_00048279-exon-scaffold_142-1575043694:197029..197617TCONS_00048279-exon-scaffold_142-1575043694:197029..197617Clytia hemisphaericaexon
TCONS_00048279-exon-scaffold_142-1491911889:198103..198825TCONS_00048279-exon-scaffold_142-1491911889:198103..198825Clytia hemisphaericaexon
TCONS_00048279-exon-scaffold_142-1510915933:198103..198825TCONS_00048279-exon-scaffold_142-1510915933:198103..198825Clytia hemisphaericaexon
TCONS_00048279-exon-scaffold_142-1575043694:198103..198825TCONS_00048279-exon-scaffold_142-1575043694:198103..198825Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:194624..198825 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0317605	0	0.0255533	0.0249999	0	0.0240501	0.116062	0.0555289	0.0385874	0.0762912	0	0	162.838	147.197	0	1.45975e-10	0.000335506	0.0804498	325.781	292.99	0	2.51166e-09	0	0	5.72524	6.22104	0.0345147	0.000543347	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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