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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048277 ID=TCONS_00048277|Name=TCONS_00048277|organism=Clytia hemisphaerica|type=transcript|length=2173bp
GTTGGTTAAACATAAGGATATATGACCCAAAACACATATAGAACATTTAA
AGCAAACTTTGCGAGTCGTATCGGAGAAAAAACGAGCTCTCATCGGACGT
TTTTGAACGTACTCAGAAAGATTTTTATTGCAAATTATGAGAGTCTGTGT
GAAGCAGATGCCATATTGATGGTCCAATGTAGAGAGAAATcttaatgttt
ttttatgaattttacggtcaatttttttttgtgtagTTGATGTAAAGAAA
TGGAAAGGAAATTTTATTATGAAGTTTAAATCGCGTATAAAAAGCATTAT
AAGGGTTTGATTGAAGAAGGATTTCTTTTGCCTGAtttataacttttttt
gggagaagaagaaaacgaatttAAGAAGAAAAGTTCAAGAAGGTGGATTT
TGTGTAAGATGTTCAAGAGAAAGTGGAGAAGAGTAGGCGCGAGGATGGAT
GAGGAGCGGCGTTTGGTGGACGGAGGATCAAAGAACAAAAGCTATAATGA
TGATACCAGAATCAAAATTGACGGAGACGATAAAAAGCCGAACGAACTGG
TCACTTTTAACGTCAGCGGTCGTAAATTCATAACAACCAGCCATACGTTA
TATAATTTCCCCGATTCCCTTATCGGAACAAGTGAAAACCGCGCTAAATT
GAAACGAACCAAAGATGGGGAGATCTTCTTAGATAGACATGCTATCGTCT
TCGAAAGCGTGCTCACGTTTTATCAGACGGGTATTTTCGAACCACCCTCT
CAAgtcaatcaaaatattttcgttgGTGATATCAAATATTATGAACTAGT
TGAAGAAGCAATGCAGTCTGGATTAAAAGGATTTGATAATAAGGTTATAC
CGATGCCAGAAAGATTAGTACAGCGTAAAATATGGACATTATTGGAGTAC
CCTGATTCATCATTCATGGCAAGAATAGTATCCATGTTTTCTCTGCTGGT
TATTATAACTTCAATCGTAACATTCTGTTGGGAAACTGTACCGGAGTATA
ATACCAATAAAGTCAATTATGATGACCTATCACCTGGTAAACAGTTGACT
ATAAAGATTCTTGACGATATTGAGTTATTCTGTATCGTCTATTTCACATT
TGAGATTATACTGCGATTCGTATGTTCACCCAAGAAATGGTCATTTatga
aagatattttgaatATCATTGATATCGTGTCGATTCTACCGTTTTATGTG
ACACTCATATTCAGCATGGAAGGTAGTGTTTCCATATACTTTCTGCGTgc
cgttcgattggttcgagtATTTCGGGTCTTTAAATTATCACGACATtcga
atgaaatgaaaatattgggTATAGCTGTTAGAGAAAGTGGACGCGAGCTT
GGAGTACTTGTATTCTTTATTTTGTTGGCAGTACTTTTATTCTCAAGTGC
TGTTTATTATGCGGAAGATGGTGTACCAGGCACGAAGTTAGTCTCGATTC
CAGGAGCTTTTTGGTGGTCTATTGTTACTATGACAACAGTGGGATACGGA
GACGAAGTTCCACAATCAATTCcTGGTCGTTTGGTCGGTGCAGTGTGCGC
CATGACAGGTATCCTCGTGATTGCAATGCCGATTCCTATCATTGTCAATA
ATTTCACACGACAATATCAACGATTGAAACCAGCATCAAAATACTGGGAA
GATTTTCAAGACACGCGGAAATTATCCGGTGAGGGTACGGACGAAAACGG
AAAAACAGACCGGAAAACTAGTCACGTGATTGGATTATATGAAGTAGACA
TTAATAAAAATGAAGCCAAAAATGCAACGGTGGTTAGTAGTAACCATAGC
AATCATGTAAATGGTAGCACAACCAAAAATAATGGTGACGTCACTGAAAT
CGGTTTACCGAATGGGAAGGTTGAAATCGCCCATACAGCGCTTTGAGAAA
AAGTTTTCGGGCTAAAGAGAGCAAAAGAGGGGCCAAAATACTTTTTATGG
ACAATAAGGGTAAAAGACATAGTATTATGGGTACTATTTACCAAAATTTg
gggaaaagtgaaaaatattcaaacTCACGTTCGATATaaagaatatattt
attttgataactttttttataaacatttgaATTGATATATATTcgtaatc
tttaaaaaacttttttttcgtttagattttttttggagGAATTGACGATG
TCAAAACTTTCGACCTCTGCCTG Run BLAST on NCBI transcript from alignment at scaffold_142:180337..190720+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048277 ID=TCONS_00048277|Name=TCONS_00048277|organism=Clytia hemisphaerica|type=transcript|length=10384bp|location=Sequence derived from alignment at scaffold_142:180337..190720+ (Clytia hemisphaerica)
GTTGGTTAAACATAAGGATATATGACCCAAAACACATATAGAACATTTAA
AGCAAACTTTGCGAGTCGTATCGGAGAAAAAACGAGCTCTCATCGGACGT
TTTTGAACGTACTCAGAAAGATTTTTATTGCAAATTATGAGAGTCTGTGT
GAAGCAGATGCCATATTGATGGTCCAATGTAGAGAGAAATcttaatgttt
ttttatgaattttacggtcaatttttttttgtgtagTTGATGTAAAGAAA
TGGAAAGGAAATTTTATTATGAAGTTTAAATCGCGTATAAAAAGCATTAT
AAGGGTTTGATTGAAGAAGGATTTCTTTTGCCTGAtttataacttttttt
gggagaagaagaaaacgaatttAAGAAGAAAAGTTCAAGAAGGTGGATTT
TGTGTAAGATGTTCAAGAGAAAGTGGAGAAGAGGTACTACtaactaaaaa
aaataattctgggGTCATTGAATTTGTTATTTGTTTTCTAAGATACATAT
CAATAATGCTTTTATAGATGGTAAGGTcaacaggcccggcggaagcgggg
agactggggagacttcagcctctccacttttgagcaaatgagattttttt
ctcaaattcttaGCGAGTTTTATCTCATTTTTTGAGCagtcagcctcccc
acttttacggttgctCCACCGGGCTTGAAAGACGTGGTGATTTGCCTGTT
AGTTAATATATTGGTTGTATGGTTGGATTTTTTAtctttatgttttcttt
atGTCTTGCAAAAATCAACAACATATTTTCATCTAAATAAGCTTTAGTTT
AACGAGCCAGTGATATTCGTTGAcaagtcattgcattgatgtTGGACAGT
AGTGGTTCATGTAACGTTTATGAGAACATTTACATAGATATGTGGAATTC
GTGTGCAACTAACAACGCCTTAAACAATCTCAGACGTCAATGtaattatt
ttaaattattatCTCGATGAACTTTCCATAATACACTTTATCTGATgatt
tcaattcatgatattgtGATAATTGTGTTTGCcacaaattttgaattcaa
acaatAAACCTGACCTACCTGACTCATCGAGGTAAAAAAAGGTatcctga
ccagcggcacatccctGTACCCCTTTTTACCCAAGCACACCCTCCCCGGA
TGTGATAGAAGTCTGGAAACACCTATTTACCCTTCCCACAAATCTTCCAA
AGGAAAGTTCTAAACTTGATCCAATTTTCCcacaaacttttttccaaaaa
ggaaagaaagcgTCGAACAAACGGTGTAcatttaacatctttttaacatC
CAtgacgttagattaacgttgaaataacgCTTTGGTTTCTGATAAAGAGT
TTACGGGTAGTTGACAGCTAATCAGGATATATAAGAAAGTATCAATTTCG
TCTGATTAGGTTACATGATAGTATCAATAGTATCAATTTCCAAATCTTTG
GTGGGAGGGTCAAGGTATTaagtgaaaactttttaaaaagtataaatGTC
AATAGCTTTTGTGTCAAATTTCTGATAGAAAGATTTTCAATATTGAGGAA
TGTtctcaacctcgttccctgcgtattattagcttttttatgcttactga
tagcgctagataatagggttctctggcgtcaatcagtagcgtaaataaag
cctgggatacacggggacgaggttggaaTGTTCTTAGAGTCTGTCGTGta
aaataaaaaggaattttgaaGAATTATTCAAAAGTTTGATTCGAGTTGTT
AGTTTGTGGTTTACAATGCGCTTAAAATACGGTAAATAACCATTTAAAAT
CTATGATTGTGATTATCACGGAATATGTATTAGAATTCCTGCATGAAACT
CTCCGCAAAAGCGAATTTTGGCTTTCAGCTCTTTACTTTggctttacttt
tttaattgtGTCAATATCTTATTCTTTTTAAATGCTTTAAGCGTAGTAGT
GAAGCGGTTATAAACCTTGATTCCCCTATGTgaggtcagggttcgattcT
CACTCGGTGCtatgattcacttggcaagttaATGTACCTTCGCTCGGGTC
GACCCATGCCTTGCGAGGGGAACTGGGTACCGTCACTCTGATAAAAGAGT
ATGGGGAGTATGTCAGGCATTTCATGAGGTGTGGTGACGATACTCATAGG
TTCAACACATGCGAAGATGTATGTCCTCCCGTGTAGTTCGGGTATCGTCG
TCTATACACCAATAACTCTGCCTTGTCGCGAGCGTAGAGTTAGCAGTGTG
TGGTAAGCGTGATAATTTCCTAGGGTAGGTATCTATCCAGGGATAAGGCC
CATTTCGGATAATTTTGAGGATTCGattctctctttttctcttctttgaa
TGCTTTGGAGAGTTAGACCTCAAACAGCTCCATAATAACTTTTTTAGGGA
ACTTTTGATGAGCATTAAGCAGAGATATATATATTAACCCTTGACTTTGC
GCACTGTAGCCGAATGCTCTACCTTTAAACTACGGATTGCTGCACTGACA
AGAACGTACTCTTTAAGCAAAAATAGGCCCTGGTGGGTTTCAATTTCCAA
CATAATTTTGACCCTGACAGAACAAATTTGACAAATCAAgtcaaaaaagt
aaatattttcttccaaTTTATGACAAAAGTTGCTGCAAAGGGACGATGAC
AAGCGAAGTGTTCATGTATTCATATTTTACACTTTAGaatggcacgccag
tcgggctggaacggtatcaggCGGGAAAAGTGaacgtaggagttaggtaa
gcgtaaaaagaaattttgttggcggcaagggctgaaagtaGTCTCTCACC
AACTTTTTCTCGTTCTCCTACGTAGCTCCTATtgtagcaaacgcccgccg
cccgTCGCCTTTATGTTTCCAccccctctgacatgattaattaacagact
agtttgctagtctaattTTACCTTGATGATCTTTTTACAAATATGTaaaa
taatattgaaatttCGCCATAGTAATAGACGGCCAGGAGGTCATTAGCAT
TTTCAACAATAACATTTAAATTACCTTCCATTAACGTTCATGATGATGCA
AAGTAACTTTGATATAACTATCAATTAAAGGGGAATTCTGTGGTTCAAAA
ACGAAATCGATTTTAAACCCGCAAGAATCGTGTCTAACTTTTCGACCGGA
ATTGGTCacttttctaccatttttgcAACGGACGTGACTCacaaatagat
cttatcggagtttttgatttttcttaaaaagcgATGCATATTGTGGGATt
atttcgggagtattacaaaaGAATTccagagatttctattgtaatactcc
cgaaacaatcacACAATACatcgtttttttagaaaaatcaaaaactccga
taagatctattgtgAGCTATTTTGCATTAGAAGTATGAACCGCAAAAact
gtttttgaaaattaataaatacctctacaaaaaaagtcaaataataATAG
ATAGCTTGCGACGGCAACATGGTTTCTGCAGCCTACGGCGATTTTTGCAA
GACATTTGCGTAGTTTTCAATAGTAAAAAGAAGATCGCAAAATAATATTT
AATTAGCTTGAAAGCAACGTTTCAATGAATAAGGTTCAATCATAATAACA
CCCAGAAAATACCtccaagaaaaattatttcacatTGATGAGTTCAGTTT
TTACAGCTAATTCTCAAAGTTAAATATCCCGACGGGGGAGAAACTGGGGG
CGGAATATGTGTGCAAAGCATGTAGCTACTTCAATGTGACTTTTTTCTGT
GGGATTGATGATGAATTTTGAGAAGTAGAACAGTCGAAAATATAATTAAA
CAGTCAAATACACTGGTCTAGTGGAAGGCACTTTTCGTTTTGTTCTCGTT
TAGCATGTATAAATGTGCCGTAACGCGAGGGGTAGCTGCCAAAAATTCGT
CTGTCGTCAAAAAATATCTACCAATACCTTGCTATTAGTTTTTGACGAAG
AACACACCAAGGCTTTGTTAGTCCAACGACGGCTCACGgtccttaaccct
ttaagtaccacggccacttttttctaagttttttaaagaaaatcgctgcA
CGGActtgcctgaatgatagaaaggtgcccagtggtaaaactccAAATTA
ATTCGgtagaggacagaatcaagtaaaccAGTAGGGCCAattttggaggt
tcttgaatcactcattgaccaaaaatggtcaaaaaacggtcaaaatctta
aaaaagtcgatttttgtcaaatctttgcattttttcgactttttggctta
aaatctcgctggaaagattcactttaaattttttttcttgaccaTGAAAC
CCAACCCAATTCCTACgaattagaccaaaaatgatgatttctaactcaaa
ctggccATTACAGGAGGATAGCCCATGTCTAGTATACTCATCATTGGTAC
TTAATGGGTTAATTGGTTAGTTTATCcggaaataaaaatttaggGGATTT
CCGCTGGAAATATTGGACCAAACAGTCATCATTATGaatgaattaaattt
taaattgcCTCGCAACCAGTGTTCATATGACtttgatacaatttttttta
agaaactagttttccCAAGCAGactcaatgtttcttaaaaaatcggcctt
ttgagccttaaatgtttctcacatgtttctaaactttttgacataatcag
cctcgtGGAAgtctggattggaaggttcttaaaaaaaaactgaattaaaa
aatttaggcattctgagcctcatgtttcttaaaagtgtttcttgaaaaaa
aaaaacgtgtagttttttttcttaattaatttcttaataataaaattttg
cCACAAAACTTTAATCAGTTGTCATCATCTCTATTTGAAGGTTTGGTAGG
GAGAAAGAATTtttcatttgaatattttgaaagattttttgtgACACGCG
TGGTTTTAACAAACGTAGCGTATAGGGGAGGTTttggatttgtttttttt
tatttgattttcaagaTGCATGCGGGCCAAGCAGCAGGTCAAATTAATGT
GGGAGAAGTACATATACATCCTGCCGGTAAGACAATAATTTGGATATTAG
AGATTAAACGTTGTTCAACTATAAATTACTTTGGTTCGATATAACGAAAT
GATAAATACAACATCCAAGTTTAAACTTCCTTTGCAATGGCCACTATTTT
TCTCTCTTACGCGGGAAATGGTGTTATTTCGAGTTTTCTTAGCTGGTGAG
CAAGCGGAACCTACTACATGTTAAGAGAATCATATTTTTAAGCTAAACTT
AACAGATGCTTGGATCTTAGACAAAATATGATTACGTCAGTTGTATCATT
TCTATAGAGCTCAATAGATAATAGCAAAAAGAAGACTTACTTGTCATTTT
CTTTATCCCAACATGCGATTTTTGATCACACGGGGTCAAGGAAATATCCG
TGGTCGTCTGGTAGAGGCAAAGACCCTCCAAGGAAGATAACGCTCTTAAA
CTACATCACATTTTGTTGTCTGGTACAGGAAAGCTTGTTTTATGCAAGGA
TAAAATGAATTCTATGTATGCAAATCGTCTAACGCATGTGATATGTACCT
GAAAAACAAGCAATgataacaaaattgaaaataaattctagAAATATTTG
TCGGTAGGGGTTGGTAtttatccttccaagaagttttaaAGAGggaaata
acttttatagatcCTTTATCTTGAACAAATTAAACTTTGCGCTCGCCAAT
TCAGAATGATGATATTGCAACACAACCCATCCGACACCAATCAATCCAGA
ATTGATCGTtatccaaaaaaaatattttcagtaattaaagCAATCTTCTT
CAGTTAGTTAAAAGAAGAAGGACAAATTCAATTGTTGGATATCAGTTTGT
GTCAGCTCTAAATTGTGTCTTGACATAGTAAACAGGGGTTATTCATCTGt
gtaaaaagcaacaaaaatctACTTAACAGACGTTTCATCTATCTAACATC
ATACTAACATCCAAATTTATTTCAGGTTAAAAGCTGGTCTGAAAACCTTA
TCTACCGGTCAATTAAAAggtaaaaatttatcatttcaTAATGTTACAAC
CTagaaactaactttttttctttctctttcaaTTTTAGTAGGCGCGAGGA
TGGATGAGGAGCGGCGTTTGGTGGACGGAGGATCAAAGAACAAAAGCTAT
AATGATGATACCAGAATCAAAATTGACGGAGACGATAAAAAGCCGAACGA
ACTGGTCACTTTTAACGTCAGCGGTCGTAAATTCATAACAACCAGCCATA
CGTTATATAATTTCCCCGATTCCCTTATCGGAACAAGTGAAAACCGCGCT
AAATTGAAACGAACCAAAGATGGGGAGATCTTCTTAGATAGACATGCTAT
CGTCTTCGAAAGCGTGCTCACGTTTTATCAGACGGGTATTTTCGAACCAC
CCTCTCAAgtcaatcaaaatattttcgttgGTGATATCAAATATTATGAA
CTAGTTGAAGAAGCAATGCAGTCTGGATTAAAAGGATTTGATAATAAGGT
TATACCGATGCCAGAAAGATTAGTACAGCGTAAAATATGGACATTATTGG
AGTACCCTGATTCATCATTCATGGCAAGAATAGTATCCATGTTTTCTCTG
CTGGTTATTATAACTTCAATCGTAACATTCTGTTGGGAAACTGTACCGGA
GTATAATACCAATAAAGTCAATTATGATGACCTATCACCTGGTAAACAGT
TGACTATAAAGATTCTTGACGATATTGAGTTATTCTGTATCGTCTATTTC
ACATTTGAGATTATACTGCGATTCGTATGTTCACCCAAGAAATGGTCATT
TatgaaagatattttgaatATCATTGATATCGTGTCGATTCTACCGTTTT
ATGTGACACTCATATTCAGCATGGAAGGTAGTGTTTCCATATACTTTCTG
CGTgccgttcgattggttcgagtATTTCGGGTCTTTAAATTATCACGACA
TtcgaatgaaatgaaaatattgggTATAGCTGTTAGAGAAAGTGGACGCG
AGCTTGGAGTACTTGTATTCTTTATTTTGTTGGCAGTACTTTTATTCTCA
AGTGCTGTTTATTATGCGGAAGATGGTGTACCAGGCACGAAGTTAGTCTC
GATTCCAGGAGCTTTTTGGTGGTCTATTGTTACTATGACAACAGTGGGAT
ACGGAGACGAAGTTCCACAATCAATTCGTAAGTAGAATTCCTTTACTTAT
CGCcaggaggggggggggcactcatatggttcGACCTacagtatgtgccg
cccttaagggtaggtttttcgaaatgcactgtaagggtgtacttttgata
gagtgcactacaaAGGTCTTCTTTATGCTGGATACACTGTTagggtgtgt
ttggggactACTGAATTGTAAGTCCGGTTAGtaagattttgatttatatC
TTTATAGTTGTAACtcgcacccattttgatttgttttgcacattgtgccg
acatctcaggctcattttcaggtggcttcagcaaaataagatatgaaatc
aaactacactgtatgtaagggtcaaaaacattcagtaaaatgcactgtaa
gggtaccttttcattGCTCAAtggctgcactgtaagggctcgattttgaa
aaccatttttttgACAGCACACGCCGTTGTTTAAAAATCGAGTGAATAAA
TAATCTAAAATGGAGTCCAGGATGTTGTTTGTTGTCAAAATTCTCATATA
TGTTTAAAATATCACCGGAGTTTGACCTATTTTCCCTTgaattttgcttt
atttttctgTCGGGTAATGAAGTTGATGTTTTCAGAGCTTTTTACGCAAT
TTTAAAAAGGAAAGCGGTTACACTAGAGACTCAGAGAGTAGATTATGCTG
GAGGATAAAAAGAATATATACTTCTGAACTAGATGAGCTAGTAAATTGCA
TGAAAACATTTCATAGACAAATTAGACCTCATTTGATAGTGGTGCCAAAA
ATTTCTGGTCCAAACACAATTAAAGCACACTTCTCACTTTAAGAAAAATT
CCAGTCACTCTATGAAaccacaaatatcttttttggaatttttccaaACT
ATCTACAATATCTATTGCTTACCGCACTATCGCTCTTATTAAGAACAAAT
GATAACAGTCTTTTGTATTCACTTTACCAATTTTCAGATCGTCGCCAGCG
AAAAAGAAAtgaacttaagggctctgaccatagtccaaaaattgattttg
gtatttgaacataaaagttacatttcaggttccttaacacttttaacaaa
gaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNgtgcgcagagtcatttacagatttttcttg
taacaatgagaagacaatggatctctcttgggagcaacgagagaagttaa
tccacctattctaatccgttggtcaaaagttatgagtttttttaagcaaa
atccagatgaaaaattgatgaaaaaccactattttgaagatttcgagaca
aacaagcatttacaaaaattttccgcaaaaatttttattgttcggtaaaa
gatacaccatctattgggaaaagattttcaaaatgttttttcttcgccga
aactaagctcttcaaagttgaaatactcttcctcgcaaaagtcttcattt
tcttcttcatcaaattttttcaatgcaattcttgaattttcagattcagg
aatagtttgtctaacagaaaatgtatgacatgccatagttttattggtta
catcagtcagaaaacacattttaaacacggcaattatgaaaaattcacta
tggtcagagcccttaataggggtggaaaataaaattgatgctctctaatt
cgacgttctactattgaGACGCACCatcattcgataatattgaaaggcAC
CGTCAACAAGATACTCTCACTAACGACGCTCTGCTACCCTTATTCTGTGA
ACATCcaatttctcttgaaaatctACTTAGAGAAAGTCGACTGTAACTTC
AAACAAATAAAAGCGAAATATCGAACGATTACAAATTTTCTACTTAAATA
AAGTCTTAAAATTGAGGAAATATAAACTTAAAATTCCTGAATTGTTTAAT
ATTTGTCTCAATTTAATCGAGAGTCCTGATGTTTTGTTAAATTAGAAAGT
TTCTAAGGTggaattctttttgtttttttacagcTGGTCGTTTGGTCGGT
GCAGTGTGCGCCATGACAGGTATCCTCGTGATTGCAATGCCGATTCCTAT
CATTGTCAATAATTTCACACGACAATATCAACGATTGAAACCAGCATCAA
AATACTGGGAAGATTTTCAAGACACGCGGAAATTATCCGGTGAGGGTACG
GACGAAAACGGAAAAACAGACCGGAAAACTAGTCACGTGATTGGATTATA
TGAAGTAGACATTAATAAAAATGAAGCCAAAAATGCAACGGTGGTTAGTA
GTAACCATAGCAATCATGTAAATGGTAGCACAACCAAAAATAATGGTGAC
GTCACTGAAATCGGTTTACCGAATGGGAAGGTTGAAATCGCCCATACAGC
GCTTTGAGAAAAAGTTTTCGGGCTAAAGAGAGCAAAAGAGGGGCCAAAAT
ACTTTTTATGGACAATAAGGGTAAAAGACATAGTATTATGGGTACTATTT
ACCAAAATTTggggaaaagtgaaaaatattcaaacTCACGTTCGATATaa
agaatatatttattttgataactttttttataaacatttgaATTGATATA
TATTcgtaatctttaaaaaacttttttttcgtttagattttttttggagG
AATTGACGATGTCAAAACTTTCGACCTCTGCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048277-exon-scaffold_142-1491911889:180337..180769 | TCONS_00048277-exon-scaffold_142-1491911889:180337..180769 | Clytia hemisphaerica | exon |
| TCONS_00048277-exon-scaffold_142-1510915933:180337..180769 | TCONS_00048277-exon-scaffold_142-1510915933:180337..180769 | Clytia hemisphaerica | exon |
| TCONS_00048277-exon-scaffold_142-1575043694:180337..180769 | TCONS_00048277-exon-scaffold_142-1575043694:180337..180769 | Clytia hemisphaerica | exon |
| TCONS_00048277-exon-scaffold_142-1491911889:186425..187513 | TCONS_00048277-exon-scaffold_142-1491911889:186425..187513 | Clytia hemisphaerica | exon |
| TCONS_00048277-exon-scaffold_142-1510915933:186425..187513 | TCONS_00048277-exon-scaffold_142-1510915933:186425..187513 | Clytia hemisphaerica | exon |
| TCONS_00048277-exon-scaffold_142-1575043694:186425..187513 | TCONS_00048277-exon-scaffold_142-1575043694:186425..187513 | Clytia hemisphaerica | exon |
| TCONS_00048277-exon-scaffold_142-1491911889:190070..190720 | TCONS_00048277-exon-scaffold_142-1491911889:190070..190720 | Clytia hemisphaerica | exon |
| TCONS_00048277-exon-scaffold_142-1510915933:190070..190720 | TCONS_00048277-exon-scaffold_142-1510915933:190070..190720 | Clytia hemisphaerica | exon |
| TCONS_00048277-exon-scaffold_142-1575043694:190070..190720 | TCONS_00048277-exon-scaffold_142-1575043694:190070..190720 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:180337..190720 + |
Blast
BLAST of TCONS_00048277 vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2) HSP 1 Score: 259.61 bits (662), Expect = 3.941e-77 Identity = 172/409 (42.05%), Postives = 254/409 (62.10%), Query Frame = 1
Query: 466 VDGGSKNKSYNDDTRI--KIDGDDKKPNELVTFNVSGRKFITTSHTLYNFPDSLIGTSENRAKLKRTKDGEIFLDRHAIVFESVLTFYQTG-IFEPPSQVNQNIFVGDIKYYELVEEAMQSGLK--GF-DNKVIPMPERLVQRKIWTLLEYPDSSFMARIVSMFSLLVIITSIVTFCWETVPEYNTNKVNYDDLSPGKQLTI----KILDD----IELFCIVYFTFEIILRFVCSPKKWSFMKDILNIIDIVSILPFYVTL---IFSMEG------SVSIYXXXXXXXXXXXXXXXXSRHSNEMKILGIAVRESGREXXXXXXXXXXXXXXXSSAVYYAEDGVPGTKLVSIPGAFWWSIVTMTTVGYGDEVPQSIPGRLVGAVCAMTGILVIAMPIPIIVNNFTRQYQR 1623
VD S + D + D DD + E V N+SG +F T TL FP++L+G + R + E F DR+ F+++L +YQ+G P V ++F +IK+YEL EEAM+ + GF + P+PE+ QR++W L EYP+SS AR++++ S++VI+ SIV FC ET+PE +K + T+ I D +E CI++F+FE+++RF P K F K+I+N IDIV+I+P+++TL I EG + S+ LR +RLVRVFR+FKLSRHS ++ILG ++ S RELG+L+FF+ + V+LFSSAVY+AE + SIP AFWW++V+MTTVGYGD P +I G++VG++CA+ G+L IA+P+P+IV+NF Y R
Sbjct: 9 VDEASAAPGHPQDGSYPRQADHDDHECCERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAEEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 417
The following BLAST results are available for this feature:
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