TCONS_00048258 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048258
Unique NameTCONS_00048258
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length395

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048258 ID=TCONS_00048258|Name=TCONS_00048258|organism=Clytia hemisphaerica|type=transcript|length=395bp
GCAGTATTAAGAACCTACCATATTGTGCCTCAGCTCGATAGTAACTACAA
TTAGACTTTAATGTttaagaaaaacactggaaGATGCTCTGGAAAAATAA
TGGAACTGTCCCCCTTCCCCCCAGTGGCAGTGGTAATGTTTAGTGTGAAA
GACCTCCCCACCTTTTCCAATGCCCTTCAACATTGTCACTGGGGGAAGGG
GGGTTGTCTCACaattttcgtccatgattgTACTACACAAAGGAGTGTTT
AGTAGCTAGTAGCTCAGAACTGAAAAGACTGAAGTTCGTCTGTGTTTCAT
TAAACTGAGGCCAATGTCAATGCCATAGATGTATAGGTGATGACACAAAA
CCTAAAAAACTAGGATATTTTTTAACGAGGTTAGATAATTTAACG
Run BLAST on NCBI

transcript from alignment at scaffold_141:511023..511417

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048258 ID=TCONS_00048258|Name=TCONS_00048258|organism=Clytia hemisphaerica|type=transcript|length=395bp|location=Sequence derived from alignment at scaffold_141:511023..511417 (Clytia hemisphaerica)
CGTTAAATTATCTAACCTCGTTAAAAAATATCCTAGTTTTTTAGGTTTTG
TGTCATCACCTATACATCTATGGCATTGACATTGGCCTCAGTTTAATGAA
ACACAGACGAACTTCAGTCTTTTCAGTTCTGAGCTACTAGCTACTAAACA
CTCCTTTGTGTAGTAcaatcatggacgaaaattGTGAGACAACCCCCCTT
CCCCCAGTGACAATGTTGAAGGGCATTGGAAAAGGTGGGGAGGTCTTTCA
CACTAAACATTACCACTGCCACTGGGGGGAAGGGGGACAGTTCCATTATT
TTTCCAGAGCATCttccagtgtttttcttaaACATTAAAGTCTAATTGTA
GTTACTATCGAGCTGAGGCACAATATGGTAGGTTCTTAATACTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030720XLOC_030720Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048258-exon-scaffold_141-1491911889:511023..511417TCONS_00048258-exon-scaffold_141-1491911889:511023..511417Clytia hemisphaericaexon
TCONS_00048258-exon-scaffold_141-1510915933:511023..511417TCONS_00048258-exon-scaffold_141-1510915933:511023..511417Clytia hemisphaericaexon
TCONS_00048258-exon-scaffold_141-1575043694:511023..511417TCONS_00048258-exon-scaffold_141-1575043694:511023..511417Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:511023..511417 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.633868	0.514449	1.01631	0	0	0.4822	1.19457	0.579737	0.254064	0.761133	0.922185	0.108309	0.697392	0.429565	0.293527	0.608284	1.27305	1.29093	2.42873	0	0	0.20479	0.54831	0	0.279126	0.211707	0.647088
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048258 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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