TCONS_00048254 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048254
Unique NameTCONS_00048254
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length267

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048254 ID=TCONS_00048254|Name=TCONS_00048254|organism=Clytia hemisphaerica|type=transcript|length=267bp
tttgaaacaaaaattattttcttttttttagtaCGATCTTGAAAATGACT
GTAAATTCGTTATAATTCAAAGTTTGTTTctcaataattttctttttatt
tcaatttgtcCATCGTatctgaaacatttttaacaaactGTATACACAAG
ACAGTATTGCCAGCACCTAAATTACCTCTGAGCCTTTATTGAAACAAGTC
GATAAACGGTTATCAATTTCATTTCACTTCGTTTATCAGTTCACCATTAA
ACCCTTAGCGGCACAAT
Run BLAST on NCBI

transcript from alignment at scaffold_141:421635..421901

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048254 ID=TCONS_00048254|Name=TCONS_00048254|organism=Clytia hemisphaerica|type=transcript|length=267bp|location=Sequence derived from alignment at scaffold_141:421635..421901 (Clytia hemisphaerica)
ATTGTGCCGCTAAGGGTTTAATGGTGAACTGATAAACGAAGTGAAATGAA ATTGATAACCGTTTATCGACTTGTTTCAATAAAGGCTCAGAGGTAATTTA GGTGCTGGCAATACTGTCTTGTGTATACagtttgttaaaaatgtttcaga tACGATGgacaaattgaaataaaaagaaaattattgagAAACAAACTTTG AATTATAACGAATTTACAGTCATTTTCAAGATCGtactaaaaaaaagaaa ataatttttgtttcaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030716XLOC_030716Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048254-exon-scaffold_141-1491911889:421635..421901TCONS_00048254-exon-scaffold_141-1491911889:421635..421901Clytia hemisphaericaexon
TCONS_00048254-exon-scaffold_141-1510915933:421635..421901TCONS_00048254-exon-scaffold_141-1510915933:421635..421901Clytia hemisphaericaexon
TCONS_00048254-exon-scaffold_141-1575043694:421635..421901TCONS_00048254-exon-scaffold_141-1575043694:421635..421901Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:421635..421901 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.6087 17.8865 8.0392 12.4531 1.59583 0 0.760701 0.712159 0.498599 0.617596 2.39781 1.18217 1.18053 3.67797 4.70367 1.44222 7.10678 2.27632 1.88691 2.63269 2.28829 5.85977 4.74888 9.86839 0 0.566957 3.24526 0.865856 2.62688 4.01457
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048254 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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