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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048224 ID=TCONS_00048224|Name=TCONS_00048224|organism=Clytia hemisphaerica|type=transcript|length=2774bpRun BLAST on NCBI protein sequence of TCONS_00048224-protein >TCONS_00048224-protein ID=TCONS_00048224-protein|Name=TCONS_00048224-protein|organism=Clytia hemisphaerica|type=polypeptide|length=884bp MAGYGGEFGGHQQGNERDKILQAKAREWNQLQSRRYAEKRKFGFVEAQKDRun BLAST on NCBI transcript from alignment at scaffold_141:561466..582475- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048224 ID=TCONS_00048224|Name=TCONS_00048224|organism=Clytia hemisphaerica|type=transcript|length=21010bp|location=Sequence derived from alignment at scaffold_141:561466..582475- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_141:561466..582475- >TCONS_00048224 ID=TCONS_00048224|Name=TCONS_00048224|organism=Clytia hemisphaerica|type=CDS|length=37128bp|location=Sequence derived from alignment at scaffold_141:561466..582475- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048224 vs. Swiss-Prot (Human)
Match: PRP8 (Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens GN=PRPF8 PE=1 SV=2) HSP 1 Score: 1561.97 bits (4043), Expect = 0.000e+0 Identity = 765/865 (88.44%), Postives = 818/865 (94.57%), Query Frame = 2
Query: 182 LQAKAREWNQLQSRRYAEKRKFGFVEAQKDDMPPEHVRKIIRDHGDMTSRKFRHDKRVYLGALKYMPHAILKLLENMPMPWEQIRDVKVLYHITGAITFVDEIPWVVEPIYIAQWGTMWIXXXXXXXXXXXXXXXXXXXXXXXXXXLDYADNIIDVEPQEPIMIDLDSEEDKHVYEWFYDHKPLVDT-KYVNGSTYRNWNLTIPMISTLYRLGNQLITDLVDENYFYLFDLKSFFTAKALNLAIPGGPKFEPLVKDISNLDEDWNEFNDINKIIIRQAIRTEYRIAFPYLYNNFTQFVHLSWYHTPTVVFIKTEDPDLPAFYFDPLINPIAHRHSVKVNEPTIEDDDEFELPEDYQPFLQDSPLYTDNTADGISLLWAPRPYNLRSGTTRRALDIPLVKTWYMEHCPSTSPVKVRVSYQKLLKYFVLNALHHRPPKAMKKRYLFRSFKATKFFQTTTLDWVEAGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDSHVQYRLTNADAYQLADGIQYVFAHVGQLTGMYRYKYKLMKQIRMCKDLKHLIYYRFNTGAVGKGPGCGIWAPGWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHYDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPIPVENMILRYVKAKADWWTNVAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYISAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEV 2773
LQ KAR+W QLQ++RYAEKRKFGFV+AQK+DMPPEHVRKIIRDHGDMT+RKFRHDKRVYLGALKYMPHA+LKLLENMPMPWEQIRDV VLYHITGAI+FV+EIPWV+EP+YI+QWG+MWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNI+DVEP E I ++LD EED V +WFYDH+PL D+ KYVNGSTY+ W T+PM+STLYRL NQL+TDLVD+NYFYLFDLK+FFT+KALN+AIPGGPKFEPLV+DI+ DEDWNEFNDINKIIIRQ IRTEY+IAFPYLYNN VHL+WYHTP VVFIKTEDPDLPAFYFDPLINPI+HRHSVK EP +DD+EFELPE +PFL+D+PLYTDNTA+GI+LLWAPRP+NLRSG TRRALDIPLVK WY EHCP+ PVKVRVSYQKLLKY+VLNAL HRPPKA KKRYLFRSFKATKFFQ+T LDWVE GLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCRE+LRLTKLVVDSHVQYRL N DA+QLADG+QY+FAHVGQLTGMYRYKYKLM+QIRMCKDLKHLIYYRFNTG VGKGPGCG WA GWRVWLFF+RGI PLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESH+DLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLP P+ENMILRYVKAKADWWTN AHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYI+AEEAVA+YTTTVHWLESRRFSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEV
Sbjct: 30 LQEKARKWQQLQAKRYAEKRKFGFVDAQKEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLYHITGAISFVNEIPWVIEPVYISQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLRDSRKYVNGSTYQRWQFTLPMMSTLYRLANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPISHRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRRALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEV 894 The following BLAST results are available for this feature:
BLAST of TCONS_00048224 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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