TCONS_00048224-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048224-protein
Unique NameTCONS_00048224-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length884

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048224-protein ID=TCONS_00048224-protein|Name=TCONS_00048224-protein|organism=Clytia hemisphaerica|type=polypeptide|length=884bp
MAGYGGEFGGHQQGNERDKILQAKAREWNQLQSRRYAEKRKFGFVEAQKD
DMPPEHVRKIIRDHGDMTSRKFRHDKRVYLGALKYMPHAILKLLENMPMP
WEQIRDVKVLYHITGAITFVDEIPWVVEPIYIAQWGTMWIMMRREKRDRR
HFKRMRFPPFDDEEPPLDYADNIIDVEPQEPIMIDLDSEEDKHVYEWFYD
HKPLVDTKYVNGSTYRNWNLTIPMISTLYRLGNQLITDLVDENYFYLFDL
KSFFTAKALNLAIPGGPKFEPLVKDISNLDEDWNEFNDINKIIIRQAIRT
EYRIAFPYLYNNFTQFVHLSWYHTPTVVFIKTEDPDLPAFYFDPLINPIA
HRHSVKVNEPTIEDDDEFELPEDYQPFLQDSPLYTDNTADGISLLWAPRP
YNLRSGTTRRALDIPLVKTWYMEHCPSTSPVKVRVSYQKLLKYFVLNALH
HRPPKAMKKRYLFRSFKATKFFQTTTLDWVEAGLQVCRQGYNMLNLLIHR
KNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDS
HVQYRLTNADAYQLADGIQYVFAHVGQLTGMYRYKYKLMKQIRMCKDLKH
LIYYRFNTGAVGKGPGCGIWAPGWRVWLFFLRGIVPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHYDLELRAAVMHDILDMMPEGIKQNKARTIL
QHLSEAWRCWKANIPWKVPGLPIPVENMILRYVKAKADWWTNVAHYNRER
IRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYISAEEAVAIY
TTTVHWLESRRFSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQ
REELGLIEQAYDNPHEALSRIKRHLLTQRAFKEV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030686XLOC_030686Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048224TCONS_00048224Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012592PROCN
IPR012591PRO8NT
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012592PROCN domainPFAMPF08083PROCNcoord: 386..791
e-value: 1.7E-234
score: 777.9
IPR012591PRO8NT domainPFAMPF08082PRO8NTcoord: 49..200
e-value: 2.2E-86
score: 287.4
IPR012591PRO8NT domainPRODOMPD149576coord: 21..226
e-value: 5.0E-83
score: 790.0

Blast
[Close]
BLAST of TCONS_00048224-protein vs. Swiss-Prot (Human)
Match: PRP8 (Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens GN=PRPF8 PE=1 SV=2)

HSP 1 Score: 1628.22 bits (4215), Expect = 0.000e+0
Identity = 765/865 (88.44%), Postives = 818/865 (94.57%), Query Frame = 0 
Query:   21 LQAKAREWNQLQSRRYAEKRKFGFVEAQKDDMPPEHVRKIIRDHGDMTSRKFRHDKRVYLGALKYMPHAILKLLENMPMPWEQIRDVKVLYHITGAITFVDEIPWVVEPIYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNIIDVEPQEPIMIDLDSEEDKHVYEWFYDHKPLVDT-KYVNGSTYRNWNLTIPMISTLYRLGNQLITDLVDENYFYLFDLKSFFTAKALNLAIPGGPKFEPLVKDISNLDEDWNEFNDINKIIIRQAIRTEYRIAFPYLYNNFTQFVHLSWYHTPTVVFIKTEDPDLPAFYFDPLINPIAHRHSVKVNEPTIEDDDEFELPEDYQPFLQDSPLYTDNTADGISLLWAPRPYNLRSGTTRRALDIPLVKTWYMEHCPSTSPVKVRVSYQKLLKYFVLNALHHRPPKAMKKRYLFRSFKATKFFQTTTLDWVEAGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDSHVQYRLTNADAYQLADGIQYVFAHVGQLTGMYRYKYKLMKQIRMCKDLKHLIYYRFNTGAVGKGPGCGIWAPGWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHYDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPIPVENMILRYVKAKADWWTNVAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYISAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEV 884
            LQ KAR+W QLQ++RYAEKRKFGFV+AQK+DMPPEHVRKIIRDHGDMT+RKFRHDKRVYLGALKYMPHA+LKLLENMPMPWEQIRDV VLYHITGAI+FV+EIPWV+EP+YI+QWG+MWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNI+DVEP E I ++LD EED  V +WFYDH+PL D+ KYVNGSTY+ W  T+PM+STLYRL NQL+TDLVD+NYFYLFDLK+FFT+KALN+AIPGGPKFEPLV+DI+  DEDWNEFNDINKIIIRQ IRTEY+IAFPYLYNN    VHL+WYHTP VVFIKTEDPDLPAFYFDPLINPI+HRHSVK  EP  +DD+EFELPE  +PFL+D+PLYTDNTA+GI+LLWAPRP+NLRSG TRRALDIPLVK WY EHCP+  PVKVRVSYQKLLKY+VLNAL HRPPKA KKRYLFRSFKATKFFQ+T LDWVE GLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCRE+LRLTKLVVDSHVQYRL N DA+QLADG+QY+FAHVGQLTGMYRYKYKLM+QIRMCKDLKHLIYYRFNTG VGKGPGCG WA GWRVWLFF+RGI PLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESH+DLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLP P+ENMILRYVKAKADWWTN AHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYI+AEEAVA+YTTTVHWLESRRFSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEV
Sbjct:   30 LQEKARKWQQLQAKRYAEKRKFGFVDAQKEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLYHITGAISFVNEIPWVIEPVYISQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLRDSRKYVNGSTYQRWQFTLPMMSTLYRLANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPISHRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRRALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEV 894
The following BLAST results are available for this feature:
BLAST of TCONS_00048224-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRP80.000e+088.44Pre-mRNA-processing-splicing factor 8 OS=Homo sapi... [more]
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