TCONS_00048213 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048213
Unique NameTCONS_00048213
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048213 ID=TCONS_00048213|Name=TCONS_00048213|organism=Clytia hemisphaerica|type=transcript|length=2312bp
AGAATCTTGCTTCAGGCAGGACGTAATTCTCATAATCTAGTTTGAAATAT
GGGAAACTGGGTACTAGGGTTACGAATTTACACAGATGACCGCGCCCGTC
ATATAAAATTCTAGGAAACAATAATATAGTGTGCATCAGGCTTTATTATT
GAAGTGTGTTAAGACCCTTAAAACGCCCATTTCGAAAATACTGCAGGATT
CCGCTCGATATGTTTGGTGAGTTATCCTGGcgattttaaaaatcgaaata
aacaaacaaaaggtCCGCAAACGTTGACTTCCGCCATTTCCAAAAGCAAC
CGCAACGCTTCGTGCAAAGACCAGAAACACAAATTTCTGCCTggttttaa
tcaaattttgtgAAGATGTCTGATAATGGCCACGAGACAAATGGTAATGC
TTCCAAGAAGAGAAAACAGATTAGAGTTTGGTGTGACGGTTGTTATGATA
TGGTTCATTTTGGTCACGCAAATCAAATTAGACAAGCAAAAGCGATGGGT
GATTATTTGATTGTAGGAGTTCACACTGATGAAGAAATCAGGCAGAATAA
AGGTCCTCCAGTGTTCAATCAAGAGGAAAGATACAAGATGGTGAAAGGGA
TCAAATGGGTGGACGAAGTAGCAGAGGGTGCACCGTATGTCACAAGTCTG
GAAACGTTGGATAAGCATAATTGTGATTTTTGTGTCCATGGAGATGATAT
CACCACGACTGCTGATGGAACAGATACTTATCATATTGTCAAAGCCAACG
GAAGATACAAGGAATGCAAACGAACTGAAGGAGTATCAACCACTAACTTA
GTAGGACGTATGTTGCTCATGACAAAAGAGCACTTCGATCACGGCCAACC
CATCAGTAGTTTAGACCCCAAAGCCTTGGAGACGACACGATCAGACAGTG
ATGCTCGCAGTCCTTACACCGGTGTTTCACACTTCTTACCCTCTTCGCAA
AAGATTGTCCAATTCGCTGATGGCCAGGACCCAAAACCAGGAGATAAGAT
TGTCTACGTTGCTGGAgcctttgatctttttcatgtGGGTCTGTTAGACT
TTTTAGAGCAAGCAAAGAAATTAGGTGACTACCTTATTGTTGGTCTTCAT
ACAGATGATGACGTCAATAGATACAAAGGAAGCAATTATCCCATCATGAA
TTTACACGAACGTGTCTTGAGTGTATTGGCCTGCAAGTATGTCAACCAAG
TTATCATTGGAGCTCCTTATAAAGTCACCAAAGAAGTCATCGACCAATTC
AAGGTGAACGCAGTAGCACATGGAACCACGCGCATCACTGCGGACGTTGA
TGGAACCGATCCGTTGCTGATATCGTCCAACGAATCATCAGACACAAACT
TGAATTCGAAACAAGAAACAAGAAGAAAGAGATCAAAGAACTAGCTGTTT
TGGATTACCTGAACAAAACCAAAGAATCCGGCGAAGAAAAATCTGATACC
AACCCTGAACTTGCTACCGTGTGAGACGTTCTCTTTAGTTCCTTAACACG
GATATTCTGGATACGAACGTTGACCAGATACTTTCTCCAACcctgtcaca
aaaacttcagAAAAACCTCTAATGGGATATGCGTAGTAAATCATATATTA
ACGGTGCTGNTTGACTTTAAGGACAGTTTTCCTGTTCCACTCATGAATGG
GAGACGCATATTTAGGAAATAATGTTTGTTGTATGTCTTCATTTTTGTCG
TCACGAATTCAGTTATGAAAAAGGGTGGCATAAGGTGCCTTTATATTAgg
atttttaccttttttgccttttttgcctCTCCGTGAcaattcttctttat
ttttccattttcattttcggttcttaatttattgttttgtattatttctt
ttcttatatttttattttgtttattatttCTGTTTATTATTTCGTTTCTC
TTACACGAAACCAGAAAGCCTAGTTTAAGCTATGACTTAGACGTCAAGCT
ACGTTAACGTCAACGTTCTTGACCAAGCTACGTCGCTTAAACCTAAGAAT
TTTCTTACGTCGTAAATGCATGCCATTACGCTGAAAACCTAATTGATGCT
ATTCGACACCATATTACATCTGATtgctttttctttgaaattatccatat
ttttctgttttcattttgtttatttctacTCTACTAGTATTTTGTTTATA
ATGAACTTTGAATATGCTATGTCATTTTAATTGTAATGTTTAATTTATAT
TTCCTGGAATATAATGGTTTTAGTCGCAAAGAATTATTTAGTGCGCCATG
GATTGTATACAGTACACACATGATggaattggccaaaaaattaagaatta
gCTTAGAACACC
Run BLAST on NCBI

protein sequence of TCONS_00048213-protein

>TCONS_00048213-protein ID=TCONS_00048213-protein|Name=TCONS_00048213-protein|organism=Clytia hemisphaerica|type=polypeptide|length=342bp
MSDNGHETNGNASKKRKQIRVWCDGCYDMVHFGHANQIRQAKAMGDYLIV
GVHTDEEIRQNKGPPVFNQEERYKMVKGIKWVDEVAEGAPYVTSLETLDK
HNCDFCVHGDDITTTADGTDTYHIVKANGRYKECKRTEGVSTTNLVGRML
LMTKEHFDHGQPISSLDPKALETTRSDSDARSPYTGVSHFLPSSQKIVQF
ADGQDPKPGDKIVYVAGAFDLFHVGLLDFLEQAKKLGDYLIVGLHTDDDV
NRYKGSNYPIMNLHERVLSVLACKYVNQVIIGAPYKVTKEVIDQFKVNAV
AHGTTRITADVDGTDPLLISSNESSDTNLNSKQETRRKRSKN
Run BLAST on NCBI

transcript from alignment at scaffold_141:493526..507828-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048213 ID=TCONS_00048213|Name=TCONS_00048213|organism=Clytia hemisphaerica|type=transcript|length=14303bp|location=Sequence derived from alignment at scaffold_141:493526..507828- (Clytia hemisphaerica)
AGAATCTTGCTTCAGGCAGGACGTAATTCTCATAATCTAGTTTGAAATAT
GGGAAACTGGGTACTAGGGTTACGAATTTACACAGATGACCGCGCCCGTC
ATATAAAATTCTAGGAAACAATAATATAGTGTGCATCAGGCTTTATTATT
GAAGTGTGTTAAGACCCTTAAAACGCCCATTTCGAAAATACTGCAGGATT
CCGCTCGATATGTTTGGTGAGTTATCCTGGCGATTTTAAAAATCGAAATA
AACAAACAAAAGGTCCGCAAACGTTGACTTCCGCCATTTCCAAAAGCAAC
CGCAACGCTTCGTGCAAAGACCAGAAACACAAATTTCTGCCTGGTTTTAA
TCAAATTTTGTGAAGATGTCTGATAATGGCCACGAGACAAATGGTAATGC
TTCCAAGAAGAGAAAACAGATTAGAGTTTGGTGTGACGGTTGTTATGATA
TGGTTCATTTTGGTCACGCAAATCAAATTAGACAAGCAAAAGCGATGGGT
GATTATTTGATTGTAGGAGTTCACACTGATGAAGAAATCAGGCAGAATAA
AGGTCCTCCAGTGTTCAATCAAGAGGAAAGGTATAGCCTATATTTTGTGA
GAATAGACTCTTCATAACAGGAACAGGATTGACGATCAAATCGATAACCA
GACCAGATCAAACAAACACCCAGACGATCTCATCAATCGAACGGAATCGA
CGATCGAACCAGTCAAACCAAATCGAATGCAATCGACCGATTGAAATTCG
ATTGTTGAACGCAATCGAATCTCAATCGAAAGTCAAAATTCTGGGTAATA
TTCGATTGGTTTGATTGTTGTTCGACTGGTTCGATCGTCGATTTGGTTCG
ATTGAGCGAGATCGTCTGGCTTTATTCTTGCAGCTTCCCAACATCCAAGC
TCTCAAACATCACAAGCCGAGTGAAATTACTTTCGATTTCCCCTAGAAAT
TATGCGATGAACAATCCGGGGGTCAATGAATTGACGATCGAACGCAATCG
AACGCAATCGAACATCAATCAACCGCAATCGAATATCAATCGAATCTGAA
AATTGCAGTGATATTCGATTGAGATTCGATTGAGTTCGATAATCGAATTT
CAATGTCGATTGCATTCGATTTGGTTCGACTGGTTCGATCGTCGATTCCG
TTCGATTGAGATTGTCTGGAAACACAATTCATTTGTTTAGTAGGAGAACA
CAGGAAGGCAGAACCCAACAGTCTTTTGGATCAGTTTGAATAGCTAATAA
CTAACAGTTAGTCACACTAGGAAATTAAGCTTTCAGAAAAAACAACATCA
GTCATCTACAGGATGTATTTCAACAACAAGGATGAGAGTTACCTGAATCA
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCAAATATCAA
CCAACCAAATTTTGTCATTCAATTCCCGAGACAGCGCTTCGATTTTTAAG
GCCTTGTTTATACGCTAAAGTAAAAATAATTCCGCTCATGTACTTACTTT
TTTGATACTTTTTGAAGTCTTCTTTGTTCGTCTCAACAATCATCCAATTT
GAGAAATCCGATGATGGACCATGACTTTGATGCTATTTGAATCAGCTCTC
CTAAGAGGAAAGTAATTCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNTTGACGTGTGCAAAAGTGCAGTGGGTATTGAAGCATGTACCACTTTTA
ATTGAGGAAGAGCACATTCTGGGGTGAAACTGTGCACAGTTAGTTCCAGC
ATTACATCCATTTGGACCTTTGTTTCCGTATTTCATGAGTTTTGGACAGG
CTTTAGGATGGGTGTACTGGCAGTTTTTACCGCGAATACCATGCTTACAT
TTTCCTTTCATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTGGGTTGGGCTACCTT
TGGCCTAGGCCCCGGGATCAGCAGCCTCTACCCGGTATTCGTTTTCTTCT
TGACTTTTGTTTATGTTTATGTTTTTTCTGTTGCTCTGAAAAAACAATGG
CCTCAGCTCTCCAAGGCCTTATTCACTAATTCTTAATGGAGTGAATTTTT
TTATCTGTGTCTTTATGTAAATGGGTCATTGCTTTTTTGCCTATCCGGCG
GTGCGCGGATCTAGGTGGGTTCTGCCTCCCCCGTAATCTTTTTTTGGGAA
GTTGCTCTTCAAATTGGTTTTCAAGGTTGGCTTGGCTCAAATTTTTTCAT
CTATGGCTCAAATTGTAGGCAATTTCTCAAAGTTTTTGAAAATGTTATTT
TCATTAAAAAGCGCCGGGTTATTTTTTCATGAATCCCTTTAGAAGTTTTG
TGGCGCATTTTTTTGCTTGAGAGTCAAGTAAACGATATAGTGCTTTCGCA
GCATTAATCTTTGATATGCATTTTGGTGGGATGCTAGTGTGACTAACTGA
CTAATCTTTTTAATGATAACTTCATCTTAAACTGCAGCTACCTACCGTAA
GTTGGTCTAATATCAACATCCCTCATCTAATTCATTCCGACACCCTTTTT
TAGAAGAGACAGGAATGATATGAAAGCTTGAATCACTGATTGAAAAATAA
TAATTCCTTTCTGACCATTAAAAGCAAAGAAAAACAGTTTCAACCTTTCT
ATCAATTTCAGCTGATAAAACGGGTGACGAAATTAGAGGAGGGATGATGT
TGACATTAGACCAAGTTACAGATAGCAAGCAGTTAGTCACACTAGCATCC
CACTAAAATGTGTATCAAAGATTAATGCTTCGAAAGCGCTATATCGTTTT
ATTGACTCTCAAGCAAAAAAATGCGCCGCAAAACGGGATTCATGAAAAAA
TAACCCGGCGCTTTTTAATGAAATTGACATTTTCAAAAACTTTGAGAAAT
TGCCTACAATTTGAGCCATAGATGAAAAAATTTGAGCCAAGCCAACCTTG
AAAACTAATTTGAAGATCAACTTCCCAAGAAAAGGATCTATGGGGGAGGC
GGAACCCACCTAGATCCGCGCACCGCCGGATAGGCTATCTCCCGGAAATT
TTGCCGGACCTCAAACACTGACCCATTTACATGTGCGGAATTGTTTTTAC
TTTAGCGTATAAACAAGGCCTTAAAAATCAAAGCGCTGTCTCGGAAATTG
AATTGACAAATTTTGGTTGGTTGATTTTGGCTGCTGCACGTTTTATTTTG
TTTCCAACTTTCAAATTTTAATTAATATTGTCTTGCAAACTTGATTCAGG
TAACTCTCATCCTTGTTGTTGAAATGTATCCTGTAGATGGCTGATGTTGT
TTTTTCTGAAAGCTTAATTTCCTAGTGTCACTAACTGGCAAGGAGAAGAT
AATTCATCCCGTTCGTACTGCTGGCTGAGACAGGGAAAGTAATGTATGTA
TGTGAAATAATTTCCAGACGATCTCAATCGAACAGAATCAAACAACCAGT
CAAACCAAATCGAACGCAATCGACCAATTGAAATTTGATTATGGAACGCA
ATCGAATCTCGATCAAATACTGTAAGTTGGTCTAATGTAGATAATTTCTA
ATTTTGACACCCTTTTTAGAGATAGGAAATAATAGGAAGGTTAGAGTCAC
AGACAAAAACGATTTTTTCCTCTCTTTATCGCTAAGCAACTAGAATAAAA
GTTGCCATCAGCGATTTAGACCTTCATTTCTTTTCATTTATTTGCATATA
AAAAAGCTAACATCGCAAATAAAATAAAAAAATTCATATTGTTGCTATCT
CCAAACAAGGGTGTCAAAATTAGATGAGGGGTGTCAACATTAGACCAACT
TACAGTATTACCACGATTTTCAGATTCTATTGATATTCGTTTGTGTTTGA
TTAATATTCGATTGCGTTCGATTACCTTCGATTTTACTTGAATGTGTTCA
ATTACTTCCGGCTAATGTTAATTTTGCTTACAGAATCAACACAGGATTAA
AGGGGGTTAAAAACATTTTTTTTTCTTATAACAGGAACTTTTAACCTCTT
TTAGACCATAGACCAATCAAACGCAGTCAAATGACAATCAAATACAGTCA
AATGACAATCGAACCAATTGAATATTACCCAGAATTTTGACGTTCGATTG
AGATGAAGTTGTGGTTTTTTACACTTTGACTATTGCTCAGTACCTTGAGT
GGTCCTAAATCCGACAGCCCTGCCTAAATCCGACCCTCCAAATAACTGCT
ATGAAAAAAAATTCTATGTTTACAAACATTCCCTCTCCAAGTTGAACAAT
AATTTGAATAAACTATTGTATTGCAAGAAATCTTGAAACAAAACATCTAA
CAAGATGACTATAATGTCAATATGTCAATGAATTAATGTGATCAAAAAAG
TGTGAGTTTGCAAAAATAATTACCTCTATTCTGAATCTGTTGCTCGTGTT
GCACGTTTACAATTTTGTAATTAAAAATTATGTTTTGTATAAGAAGCAAT
TATTGTTATTTGGTTCAATTGGTTCAGTGTATCAAATCTTTCAGTTTAGT
TGACACTTTGATATCTTCATTACTTCATTGCGTCACAGCGAAAGATTTGT
TTTTATTTTAGTTTGTATCTATGAAAGACCCCATCGGATTTAGGCAGGGC
TGTCAGATTTAGGACCACTCACGGTATAGCCCTAAATCTCCATACAGAAC
TTACTTTGTACCCAATGCAAGCACTTAAGCTAAAGGCGCTATGGTATAGT
GGTCATTGACCTTGGTTGTTGCACAGGCGACTGAGGTTCGATTCCCACTT
GCAGCGGTTCACTTGGCAAGTGAATGAACCTTCGCCCGGAAACCCACCGG
GTGAACTTTTTTTTAAACATCACCCGGCCACTAACTGTATTGTAGTATAT
TTCTTTCATTTCCTCATAGTAACAATACTATATCTATAGCAGGCTTTGTC
ATTTGAAAACTCCAGGCGTGTGGTCAATCGCACTCCTAAAAAGTACTTTA
GGCATGTGATAAGGAGTGCTATGCATAACTTTAAGTAGTAAAATCCAAAT
TTATGGCGTGTGATTAATCACTCTCCTCAAAGATTTTAGGTGTGTGTGGA
GGTGTGCGCGTGCTATCACACGCCTCAAACGATGCAGCCTGCTATAGTTA
TTTGATAAAGGTTTCTTTCTTTTTCTATTTAATGGTTTGATAAAGCTAAA
ATATTTCAGCTTCCACAGTCCAATAATCAATCATAATCCTCTCAAATTGT
ATTTTTGATCACCTAAAAGTCTATTGCTGATGTTTCCAAACTGAAATGCA
ACCATAGTGCAATAGTAGAGCATCCCGCTACTATGTGCTAGGTTATGGGG
TCATACCAACTCCCTAGAACTTACTAGTTCAAAATGGTACTTGTTGCCTC
TATGCTAAGAAAATGAATGATCAAGGGTAAGTGGAGCTATCTTGGGATAA
AGACCTTTCGGTAGATAGCTTTTGAAAAGGAGGCCTCGGTCTCTCCTGAG
TGCAGTTGCAGACTTTGATTACTTTTCACTTTTCTAACACACATGAAATA
TTTTTCCATGAATTAGATCCTTTTCATAATCCACATCCACAGCCCCAACC
CAGATAGTTTGTTCACCTCAATGTTTTGATTCCTCTTTGCTTGTTGCAAA
GATTAGCTACAATTTGTAAAAAGAATGACAAATTATACAAATGTGTTATT
TTAAATGCAGGATTATATCTACAGGAACAGACTGCGCAATCGAGGGAACT
TCCTGACTCTTAGGCTAAAAAATCATGGTCCTTTGGGATCTTCAAAATAG
GCCTATATTTATCTCCAAATGAGCCTGACTGAGCAAAAAACTGTAGTAAA
ACAATTTCCCGCCTTTGGTAGATCAGAAGTTGATTTCTGCATAATTTATG
CAAAATTGAAAACCTTCTTTACCATAAAACATTTATAACTTTTGACCTTG
GAAAGCTAACAACTCTATGCAAACTGAATTGAATCCAGTCAGGGTCAGGT
AGAGTAGAAATTGAGTCTAAATTGTTTGACGCACTAAACCCATATCGCAA
AAATAGCAAGTAAATCTCTCTATAATTTTTATATACTCTGCATGAAAATG
ACACAAAAATCATAAGATAGGAATTTGCTTTCTAAGGAAAAGCTTATGTT
TCATGATTGAGATCCTTTTATAACACATTGTTTTCTCCAGATACAAGATG
GTGAGAGGGATCAAATGGGTGGACGAAGTTGCGNTTCTCCAGATACAAGA
TGGTGAAAGGGATCAAATGGGTGGACGAAGTAGCAGAGGGTGCACCGTAT
GTCACAAGTCTGGAAACGTTGGATAAGCATAATTGTGATTTTTGTGTCCA
TGGAGATGATATCACCACGACTGCTGATGGAACAGATACTTATCATATTG
TCAAAGCCAACGGAAGGTAATTCTATCTGTATTTCACACTTGAGCTAATG
AGAAAACGTGGAGTAATTCCTTAATTTGTTTTGTTCATAGTACAGATAGA
GATTGTCCGTAGCTTGGTAATTGTCATATGTCGAAGATGTCAAAGAAACT
TGTTATCAGTATTATTGGGAAGATTGAATTTTGTCACGAATGTCACACAG
ATCCTAAGGTTGGTTCCTTTACGACGTACGGCAACTGAAATTATTTTATC
ATAAAGTGGACATGATGATATTTGAATTGCCTCACTTCTACTATTTTCAG
ATACAAGGAATGCAAACGAACTGAAGGAGTATCAACCACTAACTTAGTAG
GACGTATGTTGCTCATGACAAAAGAGCACTTCGATCACGGCCAACCCATC
AGTAGTTTAGACCCCAAAGCCTTGGAGACGACACGATCAGACAGTGATGC
TCGCAGTCCTTACACCGGTGTTTCACACTTCTTACCCTCTTCGCAAAAGA
TTGTCCAATTCGCTGATGGCCAGGACCCAAAACCAGGAGATAAGATTGTC
TACGTTGCTGGAGCCTTTGATCTTTTTCATGTGGGTCTGTTAGACTTTTT
AGAGCAAGCAAAGAAATTAGGTGACTACCTTATTGTTGGTCTTCATACAG
ATGATGACGTCAATAGATACAAAGGAAGCAATTATCCCATCATGAATTTA
CACGAACGTGTCTTGAGTGTATTGGCCTGCAAGTATGTCAACCAAGTTAT
CATTGGAGCTCCTTATAAAGTCACCAAAGAAGTCATCGACCAATTCAAGG
TAAGAAAATCATGTTTTTAGTAAAGAATGAGGATTTGTGCATCTAATGTT
TTAGGGTGAATAACCAGATTGTTGATGACATCAAATTGTTGAAGACAACT
GTAATTTATTCGATCCAAACACCAATCGAATAAATTTCTTACAACTTCTC
CACGGGAGACTGCACTTCCCTCGTATAGTCTTTTTGGCTAAAAACAAATT
GAACATTTTAAGGTCAAATGATAACAGTGTGAATCTCAGTTAACTCACAT
TTTTCCCTGCTAGGTGAACGCAGTAGCACATGGAACCACGCGCATCACTG
CGGACGTTGATGGAACCGATCCGTATGAAATTCCAAAGAAACTGAACATT
TTCCATACTGTGGAAAGTGGAAACCCATTAACGACTGCTGATATCGTCCA
ACGAATCATCAGACACAAGTAAGAAAGATTTATATTTGAACTTAAATCTG
TAGTGATAGAGGCTTTCAAATATGTGCTTTTCCTAATTTTGAACTAGCTT
TTTCATTAGGTGTTCTACTTTTTAGAAATTTTCCCTTAATTTTCTTGATA
TTTAATAAGCCAACTGATATTCAATCAAAGAAAAAAAAAAGATGATTGTG
TCTAATAGATGGATGCTTTTGAGCAGAACAGAACTATATTTGTTATGAAA
CTGTCAATAGGTTTTAAATCTTCCTTAAAAAGATTAATAAGTTGGCAAAT
GGGCTGTTCCATTTAATAAACATATAGGGGTGGATGAACCTTTTTCAATC
CAAAAATAAAAATCTCGAAATTATGTGAATGTCCCCTGGAAAAACCAAAT
TAGCAAAATAACCCTAGAATTCTATGGCTCTTGGAAAAATTCTTCTTTAT
ACCGTGAAGTGAGGTTGGACAAACTAAATACTTGATTTTTATTCGATTGC
CATTTCCACTTTATAAGGAGGATTGCATTATGCTTTTCTGTTCTTTTCTG
ACTTGAAAATTCATGTCGTGAGATCTTAGAGAGAATTAGAGATAACACAT
TAGCAATGTGGAGATGGATTTCTCCCAATTCACTGTCTCTGTCCAGTCAG
TAGAGAATTCACTTCCAGCTCTACGTAGTCGCAATTGAGCCATCGGGTTC
CACATGGACCCGTAGCTCAATGGTAGAGCAAATGCCCGCGAATGGCATGG
TAGTGAGTTTGTGTCTCGCCGGATCAGTTAGTTTTCCAACGGTTCTGGTG
GCTGGTTAGAAGACAACATGAGAGCGACTGCATTCATTCACTCTTATTCC
TTCAGACTTGAATTCGAAACAAGAAACAAGAAGAAAGAGATCAAAGAACT
AGCTGTTTTGGATTACCTGAACAAAACCAAAGAATCCGGCGAAGAAAAAT
CTGATACCAACCCTGAACTTGCTACCGTGTGAGACGTTCTCTTTAGTTCC
TTAACACGGATATTCTGGATACGAACGTTGACCAGATACTTTCTCCAACC
CTGTCACAAAAACTTCAGAAAAACCTCTAATGGGATATGCGTAGTAAATC
ATATATTAACGGTGCTGNGTTCTCTTTAGTTCCTTAACACGGATATTCTG
GATACGAACGTTGACCAGATACTTTCTCCAACCCTGTCACAAAAACTTCA
AAAAAGCATCTAATGGGATATGCGTGGTAAATCATATATTAATGGTGCTA
GTTGACTTTAAGGACAGTTTTCCTGTTCCACTCATGAATGGGAGACGCAT
ATTTAGGAAATAATGTTTGTTGTATGTCTTCATTTTTGTCGTCACGAATT
CAGTTATGAAAAAGGGTGGCATAAGGTGCCTTTATATTAGGATTTTTACC
TTTTTTGCCTTTTTTGCCTCTCCGTGACAATTCTTCTTTATTTTTCCATT
TTCATTTTCGGTTCTTAATTTATTGTTTTGTATTATTTCTTTTCTTATAT
TTTTATTTTGTTTATTATTTCTGTTTATTATTTCGTTTCTCTTACACGAA
ACCAGAAAGCCTAGTTTAAGCTATGACTTAGACGTCAAGCTACGTTAACG
TCAACGTTCTTGACCAAGCTACGTCGCTTAAACCTAAGAATTTTCTTACG
TCGTAAATGCATGCCATTACGCTGAAAACCTAATTGATGCTATTCGACAC
CATATTACATCTGATTGCTTTTTCTTTGAAATTATCCATATTTTTCTGTT
TTCATTTTGTTTATTTCTACTCTACTAGTATTTTGTTTATAATGAACTTT
GAATATGCTATGTCATTTTAATTGTAATGTTTAATTTATATTTCCTGGAA
TATAATGGTTTTAGTCGCAAAGAATTATTTAGTGCGCCATGGATTGTATA
CAGTACACACATGATGGAATTGGCCAAAAAATTAAGAATTAGCTTAGAAC
ACC

Coding sequence (CDS) from alignment at scaffold_141:493526..507828-

>TCONS_00048213 ID=TCONS_00048213|Name=TCONS_00048213|organism=Clytia hemisphaerica|type=CDS|length=6174bp|location=Sequence derived from alignment at scaffold_141:493526..507828- (Clytia hemisphaerica)
ACTTGAATTCGAAACAAGAAACAAGAAGAAAGAGATCAAAGAACTAGTGC
TGATATCGTCCAACGAATCATCAGACACAAGTGAACGCAGTAGCACATGG
AACCACGCGCATCACTGCGGACGTTGATGGAACCGATCCGTATACAAGGA
ATGCAAACGAACTGAAGGAGTATCAACCACTAACTTAGTAGGACGTATGT
TGCTCATGACAAAAGAGCACTTCGATCACGGCCAACCCATCAGTAGTTTA
GACCCCAAAGCCTTGGAGACGACACGATCAGACAGTGATGCTCGCAGTCC
TTACACCGGTGTTTCACACTTCTTACCCTCTTCGCAAAAGATTGTCCAAT
TCGCTGATGGCCAGGACCCAAAACCAGGAGATAAGATTGTCTACGTTGCT
GGAGCCTTTGATCTTTTTCATGTGGGTCTGTTAGACTTTTTAGAGCAAGC
AAAGAAATTAGGTGACTACCTTATTGTTGGTCTTCATACAGATGATGACG
TCAATAGATACAAAGGAAGCAATTATCCCATCATGAATTTACACGAACGT
GTCTTGAGTGTATTGGCCTGCAAGTATGTCAACCAAGTTATCATTGGAGC
TCCTTATAAAGTCACCAAAGAAGTCATCGACCAATTCAAGATACAAGATG
GTGAAAGGGATCAAATGGGTGGACGAAGTAGCAGAGGGTGCACCGTATGT
CACAAGTCTGGAAACGTTGGATAAGCATAATTGTGATTTTTGTGTCCATG
GAGATGATATCACCACGACTGCTGATGGAACAGATACTTATCATATTGTC
AAAGCCAACGGAAGATGTCTGATAATGGCCACGAGACAAATGGTAATGCT
TCCAAGAAGAGAAAACAGATTAGAGTTTGGTGTGACGGTTGTTATGATAT
GGTTCATTTTGGTCACGCAAATCAAATTAGACAAGCAAAAGCGATGGGTG
ATTATTTGATTGTAGGAGTTCACACTGATGAAGAAATCAGGCAGAATAAA
GGTCCTCCAGTGTTCAATCAAGAGGAAAGACTTGAATTCGAAACAAGAAA
CAAGAAGAAAGAGATCAAAGAACTAGTGCTGATATCGTCCAACGAATCAT
CAGACACAAGTGAACGCAGTAGCACATGGAACCACGCGCATCACTGCGGA
CGTTGATGGAACCGATCCGTATACAAGGAATGCAAACGAACTGAAGGAGT
ATCAACCACTAACTTAGTAGGACGTATGTTGCTCATGACAAAAGAGCACT
TCGATCACGGCCAACCCATCAGTAGTTTAGACCCCAAAGCCTTGGAGACG
ACACGATCAGACAGTGATGCTCGCAGTCCTTACACCGGTGTTTCACACTT
CTTACCCTCTTCGCAAAAGATTGTCCAATTCGCTGATGGCCAGGACCCAA
AACCAGGAGATAAGATTGTCTACGTTGCTGGAGCCTTTGATCTTTTTCAT
GTGGGTCTGTTAGACTTTTTAGAGCAAGCAAAGAAATTAGGTGACTACCT
TATTGTTGGTCTTCATACAGATGATGACGTCAATAGATACAAAGGAAGCA
ATTATCCCATCATGAATTTACACGAACGTGTCTTGAGTGTATTGGCCTGC
AAGTATGTCAACCAAGTTATCATTGGAGCTCCTTATAAAGTCACCAAAGA
AGTCATCGACCAATTCAAGATACAAGATGGTGAAAGGGATCAAATGGGTG
GACGAAGTAGCAGAGGGTGCACCGTATGTCACAAGTCTGGAAACGTTGGA
TAAGCATAATTGTGATTTTTGTGTCCATGGAGATGATATCACCACGACTG
CTGATGGAACAGATACTTATCATATTGTCAAAGCCAACGGAAGATGTCTG
ATAATGGCCACGAGACAAATGGTAATGCTTCCAAGAAGAGAAAACAGATT
AGAGTTTGGTGTGACGGTTGTTATGATATGGTTCATTTTGGTCACGCAAA
TCAAATTAGACAAGCAAAAGCGATGGGTGATTATTTGATTGTAGGAGTTC
ACACTGATGAAGAAATCAGGCAGAATAAAGGTCCTCCAGTGTTCAATCAA
GAGGAAAGACTTGAATTCGAAACAAGAAACAAGAAGAAAGAGATCAAAGA
ACTAGTGCTGATATCGTCCAACGAATCATCAGACACAAGTGAACGCAGTA
GCACATGGAACCACGCGCATCACTGCGGACGTTGATGGAACCGATCCGTA
TACAAGGAATGCAAACGAACTGAAGGAGTATCAACCACTAACTTAGTAGG
ACGTATGTTGCTCATGACAAAAGAGCACTTCGATCACGGCCAACCCATCA
GTAGTTTAGACCCCAAAGCCTTGGAGACGACACGATCAGACAGTGATGCT
CGCAGTCCTTACACCGGTGTTTCACACTTCTTACCCTCTTCGCAAAAGAT
TGTCCAATTCGCTGATGGCCAGGACCCAAAACCAGGAGATAAGATTGTCT
ACGTTGCTGGAGCCTTTGATCTTTTTCATGTGGGTCTGTTAGACTTTTTA
GAGCAAGCAAAGAAATTAGGTGACTACCTTATTGTTGGTCTTCATACAGA
TGATGACGTCAATAGATACAAAGGAAGCAATTATCCCATCATGAATTTAC
ACGAACGTGTCTTGAGTGTATTGGCCTGCAAGTATGTCAACCAAGTTATC
ATTGGAGCTCCTTATAAAGTCACCAAAGAAGTCATCGACCAATTCAAGAT
ACAAGATGGTGAAAGGGATCAAATGGGTGGACGAAGTAGCAGAGGGTGCA
CCGTATGTCACAAGTCTGGAAACGTTGGATAAGCATAATTGTGATTTTTG
TGTCCATGGAGATGATATCACCACGACTGCTGATGGAACAGATACTTATC
ATATTGTCAAAGCCAACGGAAGATGTCTGATAATGGCCACGAGACAAATG
GTAATGCTTCCAAGAAGAGAAAACAGATTAGAGTTTGGTGTGACGGTTGT
TATGATATGGTTCATTTTGGTCACGCAAATCAAATTAGACAAGCAAAAGC
GATGGGTGATTATTTGATTGTAGGAGTTCACACTGATGAAGAAATCAGGC
AGAATAAAGGTCCTCCAGTGTTCAATCAAGAGGAAAGACTTGAATTCGAA
ACAAGAAACAAGAAGAAAGAGATCAAAGAACTAGTGCTGATATCGTCCAA
CGAATCATCAGACACAAGTGAACGCAGTAGCACATGGAACCACGCGCATC
ACTGCGGACGTTGATGGAACCGATCCGTATACAAGGAATGCAAACGAACT
GAAGGAGTATCAACCACTAACTTAGTAGGACGTATGTTGCTCATGACAAA
AGAGCACTTCGATCACGGCCAACCCATCAGTAGTTTAGACCCCAAAGCCT
TGGAGACGACACGATCAGACAGTGATGCTCGCAGTCCTTACACCGGTGTT
TCACACTTCTTACCCTCTTCGCAAAAGATTGTCCAATTCGCTGATGGCCA
GGACCCAAAACCAGGAGATAAGATTGTCTACGTTGCTGGAGCCTTTGATC
TTTTTCATGTGGGTCTGTTAGACTTTTTAGAGCAAGCAAAGAAATTAGGT
GACTACCTTATTGTTGGTCTTCATACAGATGATGACGTCAATAGATACAA
AGGAAGCAATTATCCCATCATGAATTTACACGAACGTGTCTTGAGTGTAT
TGGCCTGCAAGTATGTCAACCAAGTTATCATTGGAGCTCCTTATAAAGTC
ACCAAAGAAGTCATCGACCAATTCAAGATACAAGATGGTGAAAGGGATCA
AATGGGTGGACGAAGTAGCAGAGGGTGCACCGTATGTCACAAGTCTGGAA
ACGTTGGATAAGCATAATTGTGATTTTTGTGTCCATGGAGATGATATCAC
CACGACTGCTGATGGAACAGATACTTATCATATTGTCAAAGCCAACGGAA
GATGTCTGATAATGGCCACGAGACAAATGGTAATGCTTCCAAGAAGAGAA
AACAGATTAGAGTTTGGTGTGACGGTTGTTATGATATGGTTCATTTTGGT
CACGCAAATCAAATTAGACAAGCAAAAGCGATGGGTGATTATTTGATTGT
AGGAGTTCACACTGATGAAGAAATCAGGCAGAATAAAGGTCCTCCAGTGT
TCAATCAAGAGGAAAGACTTGAATTCGAAACAAGAAACAAGAAGAAAGAG
ATCAAAGAACTAGTGCTGATATCGTCCAACGAATCATCAGACACAAGTGA
ACGCAGTAGCACATGGAACCACGCGCATCACTGCGGACGTTGATGGAACC
GATCCGTATACAAGGAATGCAAACGAACTGAAGGAGTATCAACCACTAAC
TTAGTAGGACGTATGTTGCTCATGACAAAAGAGCACTTCGATCACGGCCA
ACCCATCAGTAGTTTAGACCCCAAAGCCTTGGAGACGACACGATCAGACA
GTGATGCTCGCAGTCCTTACACCGGTGTTTCACACTTCTTACCCTCTTCG
CAAAAGATTGTCCAATTCGCTGATGGCCAGGACCCAAAACCAGGAGATAA
GATTGTCTACGTTGCTGGAGCCTTTGATCTTTTTCATGTGGGTCTGTTAG
ACTTTTTAGAGCAAGCAAAGAAATTAGGTGACTACCTTATTGTTGGTCTT
CATACAGATGATGACGTCAATAGATACAAAGGAAGCAATTATCCCATCAT
GAATTTACACGAACGTGTCTTGAGTGTATTGGCCTGCAAGTATGTCAACC
AAGTTATCATTGGAGCTCCTTATAAAGTCACCAAAGAAGTCATCGACCAA
TTCAAGATACAAGATGGTGAAAGGGATCAAATGGGTGGACGAAGTAGCAG
AGGGTGCACCGTATGTCACAAGTCTGGAAACGTTGGATAAGCATAATTGT
GATTTTTGTGTCCATGGAGATGATATCACCACGACTGCTGATGGAACAGA
TACTTATCATATTGTCAAAGCCAACGGAAGATGTCTGATAATGGCCACGA
GACAAATGGTAATGCTTCCAAGAAGAGAAAACAGATTAGAGTTTGGTGTG
ACGGTTGTTATGATATGGTTCATTTTGGTCACGCAAATCAAATTAGACAA
GCAAAAGCGATGGGTGATTATTTGATTGTAGGAGTTCACACTGATGAAGA
AATCAGGCAGAATAAAGGTCCTCCAGTGTTCAATCAAGAGGAAAGACTTG
AATTCGAAACAAGAAACAAGAAGAAAGAGATCAAAGAACTAGTGCTGATA
TCGTCCAACGAATCATCAGACACAAGTGAACGCAGTAGCACATGGAACCA
CGCGCATCACTGCGGACGTTGATGGAACCGATCCGTATACAAGGAATGCA
AACGAACTGAAGGAGTATCAACCACTAACTTAGTAGGACGTATGTTGCTC
ATGACAAAAGAGCACTTCGATCACGGCCAACCCATCAGTAGTTTAGACCC
CAAAGCCTTGGAGACGACACGATCAGACAGTGATGCTCGCAGTCCTTACA
CCGGTGTTTCACACTTCTTACCCTCTTCGCAAAAGATTGTCCAATTCGCT
GATGGCCAGGACCCAAAACCAGGAGATAAGATTGTCTACGTTGCTGGAGC
CTTTGATCTTTTTCATGTGGGTCTGTTAGACTTTTTAGAGCAAGCAAAGA
AATTAGGTGACTACCTTATTGTTGGTCTTCATACAGATGATGACGTCAAT
AGATACAAAGGAAGCAATTATCCCATCATGAATTTACACGAACGTGTCTT
GAGTGTATTGGCCTGCAAGTATGTCAACCAAGTTATCATTGGAGCTCCTT
ATAAAGTCACCAAAGAAGTCATCGACCAATTCAAGATACAAGATGGTGAA
AGGGATCAAATGGGTGGACGAAGTAGCAGAGGGTGCACCGTATGTCACAA
GTCTGGAAACGTTGGATAAGCATAATTGTGATTTTTGTGTCCATGGAGAT
GATATCACCACGACTGCTGATGGAACAGATACTTATCATATTGTCAAAGC
CAACGGAAGATGTCTGATAATGGCCACGAGACAAATGGTAATGCTTCCAA
GAAGAGAAAACAGATTAGAGTTTGGTGTGACGGTTGTTATGATATGGTTC
ATTTTGGTCACGCAAATCAAATTAGACAAGCAAAAGCGATGGGTGATTAT
TTGATTGTAGGAGTTCACACTGATGAAGAAATCAGGCAGAATAAAGGTCC
TCCAGTGTTCAATCAAGAGGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030683XLOC_030683Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048213-proteinTCONS_00048213-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048213-exon-scaffold_141-1575043694:507249..507828TCONS_00048213-exon-scaffold_141-1575043694:507249..507828Clytia hemisphaericaexon
TCONS_00048213-exon-scaffold_141-1575043694:496663..496836TCONS_00048213-exon-scaffold_141-1575043694:496663..496836Clytia hemisphaericaexon
TCONS_00048213-exon-scaffold_141-1575043694:495880..496378TCONS_00048213-exon-scaffold_141-1575043694:495880..496378Clytia hemisphaericaexon
TCONS_00048213-exon-scaffold_141-1575043694:495555..495615TCONS_00048213-exon-scaffold_141-1575043694:495555..495615Clytia hemisphaericaexon
TCONS_00048213-exon-scaffold_141-1575043694:495461..495493TCONS_00048213-exon-scaffold_141-1575043694:495461..495493Clytia hemisphaericaexon
TCONS_00048213-exon-scaffold_141-1575043694:494361..494623TCONS_00048213-exon-scaffold_141-1575043694:494361..494623Clytia hemisphaericaexon
TCONS_00048213-exon-scaffold_141-1575043694:493526..494227TCONS_00048213-exon-scaffold_141-1575043694:493526..494227Clytia hemisphaericaexon
TCONS_00048213-exon-scaffold_141-1510915933:507249..507828TCONS_00048213-exon-scaffold_141-1510915933:507249..507828Clytia hemisphaericaexon
TCONS_00048213-exon-scaffold_141-1510915933:496663..496836TCONS_00048213-exon-scaffold_141-1510915933:496663..496836Clytia hemisphaericaexon
TCONS_00048213-exon-scaffold_141-1510915933:495880..496378TCONS_00048213-exon-scaffold_141-1510915933:495880..496378Clytia hemisphaericaexon
TCONS_00048213-exon-scaffold_141-1510915933:495555..495615TCONS_00048213-exon-scaffold_141-1510915933:495555..495615Clytia hemisphaericaexon
TCONS_00048213-exon-scaffold_141-1510915933:495461..495493TCONS_00048213-exon-scaffold_141-1510915933:495461..495493Clytia hemisphaericaexon
TCONS_00048213-exon-scaffold_141-1510915933:494361..494623TCONS_00048213-exon-scaffold_141-1510915933:494361..494623Clytia hemisphaericaexon
TCONS_00048213-exon-scaffold_141-1510915933:493526..494227TCONS_00048213-exon-scaffold_141-1510915933:493526..494227Clytia hemisphaericaexon
TCONS_00048213-exon-scaffold_141-1491911889:507249..507828TCONS_00048213-exon-scaffold_141-1491911889:507249..507828Clytia hemisphaericaexon
TCONS_00048213-exon-scaffold_141-1491911889:496663..496836TCONS_00048213-exon-scaffold_141-1491911889:496663..496836Clytia hemisphaericaexon
TCONS_00048213-exon-scaffold_141-1491911889:495880..496378TCONS_00048213-exon-scaffold_141-1491911889:495880..496378Clytia hemisphaericaexon
TCONS_00048213-exon-scaffold_141-1491911889:495555..495615TCONS_00048213-exon-scaffold_141-1491911889:495555..495615Clytia hemisphaericaexon
TCONS_00048213-exon-scaffold_141-1491911889:495461..495493TCONS_00048213-exon-scaffold_141-1491911889:495461..495493Clytia hemisphaericaexon
TCONS_00048213-exon-scaffold_141-1491911889:494361..494623TCONS_00048213-exon-scaffold_141-1491911889:494361..494623Clytia hemisphaericaexon
TCONS_00048213-exon-scaffold_141-1491911889:493526..494227TCONS_00048213-exon-scaffold_141-1491911889:493526..494227Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:493526..507828 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
156.565	172.281	209.553	205.236	104.537	86.4578	149.938	175.93	200.605	179.611	209.204	294.333	199.5	182.914	154.615	152.178	90.7399	114.772	97.9864	103.996	102.453	93.7521	70.6004	98.0478	112.16	107.418	114.56	146.906	38.6746	34.8632
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014729Rossmann-like_a/b/a_fold
IPR004821Cyt_trans-like
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009058 biosynthetic process
molecular_function GO:0003824 catalytic activity
Blast
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BLAST of TCONS_00048213 vs. Swiss-Prot (Human)
Match: PCY2 (Ethanolamine-phosphate cytidylyltransferase OS=Homo sapiens GN=PCYT2 PE=1 SV=1)

HSP 1 Score: 409.838 bits (1052), Expect = 2.399e-135
Identity = 204/322 (63.35%), Postives = 250/322 (77.64%), Query Frame = 3 
Query:  366 MSDNGHETNGNASKK----RKQIRVWCDGCYDMVHFGHANQIRQAKAMGDYLIVGVHTDEEIRQNKGPPVFNQEERYKMVKGIKWVDEVAEGAPYVTSLETLDKHNCDFCVHXXXXXXXXXXXXXYHIVKANGRYKECKRTEGVSTTNLVGRMLLMTKEHFDHGQPISSLDPKALETTRSDSDARSPYTGVSHFLPSSQKIVQFADGQDPKPGDKIVYVAGAFDLFHVGLLDFLEQAKKLGD--YLIVGLHTDDDVNRYKGSNYPIMNLHERVLSVLACKYVNQVIIGAPYKVTKEVIDQFKVNAVAHGTTRITADVDGTDP 1313
            M  NG    G A +     R+ +RVWCDGCYDMVH+GH+NQ+RQA+AMGDYLIVGVHTDEEI ++KGPPVF QEERYKMV+ IKWVDEV   APYVT+LETLDK+NCDFCVHG+DIT T DG DTY  VK  GRY+ECKRT+GVSTT+LVGRMLL+TK H    Q +SS   +  ++       R+P+TGVS FL +SQKI+QFA G++P+PG+ ++YVAGAFDLFH+G +DFLE+  +L +  Y+I GLH D +VN YKG NYPIMNLHER LSVLAC+YV++V+IGAPY VT E++  FKV+ V HG T I  D DG+DP
Sbjct:    1 MIRNGRGAAGGAEQPGPGGRRAVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKMVQAIKWVDEVVPAAPYVTTLETLDKYNCDFCVHGNDITLTVDGRDTYEEVKQAGRYRECKRTQGVSTTDLVGRMLLVTKAHHS-SQEMSSEYREYADSFGKCPGGRNPWTGVSQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYAVTAELLSHFKVDLVCHGKTEIIPDRDGSDP 321
The following BLAST results are available for this feature:
BLAST of TCONS_00048213 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PCY22.399e-13563.35Ethanolamine-phosphate cytidylyltransferase OS=Hom... [more]
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