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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048212 ID=TCONS_00048212|Name=TCONS_00048212|organism=Clytia hemisphaerica|type=transcript|length=784bp
CAGTCTTCCTGAGATCTTAAAGCAAGACGAGACAGAACTAAAAGAACTGA
AAAAAGCTTTACCAAAAGTTTATCAGATCTCGGTATCCAATATATCAACA
AAGATGCCCGGACTCGGAAAACTTGACAACAAACCAAAAACCTCGAAAAC
TGTTACCACAAGCAATGGAGGAACCAGTGCACCCAAGAAGTCCCTTGTAA
CTGTCAACAACAGTAGCATCCCAAAAAATATCCCAAAGAAATCATTTGCT
TTGACATCACGAACGTCTTCATCTAGCTTCAGCTCAAAATCTAACATCAA
GAAATAATTGCCTGGATTCATATGGTATCATATGGTATGGTATGGATCTG
ATTCGAGTTAATTTCTAATATATCTTTTGTAaatatttgtaaatatttta
attcttttgtatAAAGCATCCTCGTATTCTCGTATCGATGAGAATTTCCC
ACATTGAAAGCTTTTTCATTTAGTactctcaatttttgatgattaTTGTT
TTGTCTTTAAGACGTTTTTTTTGGGACTTTGAAGTATTCCAAAGCAAaag
agaaagaatttttttcaagaaccttTACTCCTTGCTGCAATACATGCTTG
ATTATTTTATTAACTCCTATTATTACACTTATACTCTGtcaaattgtttg
aatactTAACTTTTCTGTATTATACACATACTGCATTTGTAAATAAGTGA
CGGGGCAAATTGTTTTTGTCCAATGTAAATATTATATTGTAAGATTTTAT
ACTGTCAGGTTGACAAAATAATCAAATGTAATCG Run BLAST on NCBI protein sequence of TCONS_00048212-protein >TCONS_00048212-protein ID=TCONS_00048212-protein|Name=TCONS_00048212-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
SLPEILKQDETELKELKKALPKVYQISVSNISTKMPGLGKLDNKPKTSKT
VTTSNGGTSAPKKSLVTVNNSSIPKNIPKKSFALTSRTSSSSFSSKSNIK
K Run BLAST on NCBI transcript from alignment at scaffold_141:487849..488927- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048212 ID=TCONS_00048212|Name=TCONS_00048212|organism=Clytia hemisphaerica|type=transcript|length=1079bp|location=Sequence derived from alignment at scaffold_141:487849..488927- (Clytia hemisphaerica)
CAGTCTTCCTGAGATCTTAAAGCAAGACGAGACAGAACTAAAAGAACTGA
AAAAAGCTTTACCAAAAGTTTATCAGGTTTGTAGAGTTATATATTTTTTA
TGTACATTGCAAGCTTCATAAGTAATCTACTTCTTTCGCACTGTTCCTTT
TATATAGGATACCAACATCTAAGCGTAACTAAGGAGGATCTTACACTTTC
AGTTAAAGTTTTCTCTTCGTTAAAATGGTCATTCATTAGAAAACACTTTG
CACTTCTTATTGTAATAATTCTTATCCTTTTTTATTTATTCTACATTTCC
AGATCTCGATATCCAANCTTTACACTTCTTACTGTAATTCTTATCCTTTT
TTATTTATTTTACATTTCCAGATCTCGGTATCCAATATATCAACAAAGAT
GCCCGGACTCGGAAAACTTGACAACAAACCAAAAACCTCGAAAACTGTTA
CCACAAGCAATGGAGGAACCAGTGCACCCAAGAAGTCCCTTGTAACTGTC
AACAACAGTAGCATCCCAAAAAATATCCCAAAGAAATCATTTGCTTTGAC
ATCACGAACGTCTTCATCTAGCTTCAGCTCAAAATCTAACATCAAGAAAT
AATTGCCTGGATTCATATGGTATCATATGGTATGGTATGGATCTGATTCG
AGTTAATTTCTAATATATCTTTTGTAAATATTTGTAAATATTTTAATTCT
TTTGTATAAAGCATCCTCGTATTCTCGTATCGATGAGAATTTCCCACATT
GAAAGCTTTTTCATTTAGTACTCTCAATTTTTGATGATTATTGTTTTGTC
TTTAAGACGTTTTTTTTGGGACTTTGAAGTATTCCAAAGCAAAAGAGAAA
GAATTTTTTTCAAGAACCTTTACTCCTTGCTGCAATACATGCTTGATTAT
TTTATTAACTCCTATTATTACACTTATACTCTGTCAAATTGTTTGAATAC
TTAACTTTTCTGTATTATACACATACTGCATTTGTAAATAAGTGACGGGG
CAAATTGTTTTTGTCCAATGTAAATATTATATTGTAAGATTTTATACTGT
CAGGTTGACAAAATAATCAAATGTAATCG Coding sequence (CDS) from alignment at scaffold_141:487849..488927- >TCONS_00048212 ID=TCONS_00048212|Name=TCONS_00048212|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at scaffold_141:487849..488927- (Clytia hemisphaerica)
ATCTCGGTATCCAATATATCAACAAAGATGCCCGGACTCGGAAAACTTGA
CAACAAACCAAAAACCTCGAAAACTGTTACCACAAGCAATGGAGGAACCA
GTGCACCCAAGAAGTCCCTTGTAACTGTCAACAACAGTAGCATCCCAAAA
AATATCCCAAAGAAATCATTTGCTTTGACATCACGAACGTCTTCATCTAG
CTTCAGCTCAAAATCTAACATCAAGAAATAAAGTCTTCCTGAGATCTTAA
AGCAAGACGAGACAGAACTAAAAGAACTGAAAAAAGCTTTACCAAAAGTT
TATCAGATCTCGGTATCCAATATATCAACAAAGATGCCCGGACTCGGAAA
ACTTGACAACAAACCAAAAACCTCGAAAACTGTTACCACAAGCAATGGAG
GAACCAGTGCACCCAAGAAGTCCCTTGTAACTGTCAACAACAGTAGCATC
CCAAAAAATATCCCAAAGAAATCATTTGCTTTGACATCACGAACGTCTTC
ATCTAGCTTCAGCTCAAAATCTAACATCAAGAAATAAAGTCTTCCTGAGA
TCTTAAAGCAAGACGAGACAGAACTAAAAGAACTGAAAAAAGCTTTACCA
AAAGTTTATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048212-exon-scaffold_141-1575043694:488852..488927 | TCONS_00048212-exon-scaffold_141-1575043694:488852..488927 | Clytia hemisphaerica | exon |
| TCONS_00048212-exon-scaffold_141-1575043694:487849..488556 | TCONS_00048212-exon-scaffold_141-1575043694:487849..488556 | Clytia hemisphaerica | exon |
| TCONS_00048212-exon-scaffold_141-1510915933:488852..488927 | TCONS_00048212-exon-scaffold_141-1510915933:488852..488927 | Clytia hemisphaerica | exon |
| TCONS_00048212-exon-scaffold_141-1510915933:487849..488556 | TCONS_00048212-exon-scaffold_141-1510915933:487849..488556 | Clytia hemisphaerica | exon |
| TCONS_00048212-exon-scaffold_141-1491911889:488852..488927 | TCONS_00048212-exon-scaffold_141-1491911889:488852..488927 | Clytia hemisphaerica | exon |
| TCONS_00048212-exon-scaffold_141-1491911889:487849..488556 | TCONS_00048212-exon-scaffold_141-1491911889:487849..488556 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:487849..488927 - |
Blast
The following BLAST results are available for this feature:
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