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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048194 ID=TCONS_00048194|Name=TCONS_00048194|organism=Clytia hemisphaerica|type=transcript|length=564bp
ATCCCTCATAACCAAACAATCGTGGACAATGAACGTTGCAGAAACGACGT
CTCCGATAAACCGTCCTCGTTTCATTGGTCGCTACACGGAAGAGCCTTTT
GACTTGTTTGGTAACCGGACCGTGACTACATGTCGTCTCGTTGATCACCA
TAGTGGCATTGCCCTGACAGAACTCCGTCACCACACCTGGTACACATGTG
TATAATTCACATGTTTTTGGCTGACATTTCTCATTAAACTCTGACTTCAA
CTGTTGAGAACCTTTCAGAAGGTCGTTCACTTCATTTCGTGTTTGATTGA
CAACGTTGTGATACTTGGTAATATTTTGCAGAACGTTCAATAATGATGCT
TCTGGACCTTCCACCTCGTTCTGTTTTTTACTCATAGCATTTTTTAAAGT
AATAATCATATTGACAGCTTTTGATAAATCCTCCTCTAAATGTTGCCGAC
GTAGCTGATATGTTGTGTTTTCATCACGAAGTTGTTTTTCTACTTCTTGT
ATTATAGACATTTCAAGTGATGTATTTGTAGATCGCCCGTTTATGTTCAT
GGCAGTGTCATCAC Run BLAST on NCBI transcript from alignment at scaffold_141:240926..242670- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048194 ID=TCONS_00048194|Name=TCONS_00048194|organism=Clytia hemisphaerica|type=transcript|length=1745bp|location=Sequence derived from alignment at scaffold_141:240926..242670- (Clytia hemisphaerica)
ATCCCTCATAACCAAACAATCGTGGACAATGAACGTTGCAGAAACGACGT
CTCCGATAAACCGTCCTCGTTTCATTGGTCGCTACACGGAAGAGCCTTTT
GACTTGTTTGGTAACCGGACCGTGACTACATGTCGTCTCGTTGATCACCA
TAGTGGCATTGCCCTGACAGAACTCCGTCACCACACCTGGTACATGTAAA
TAGGAGTTATTGAAAACCTTAAAACCTACATGGCCTAAAAGATTTAAGTT
TGTTATACCTTAAGACCTTAAGTTTGGATTATTTTGGATGGAAAGTAAAT
TTGGCGAAAATTTTTCCAAAATTTCAATAAATGACCACGAGCGAAAAATC
TTAAATCCCGCTAAATTTAACAAAAGGATAATTCAATGAAATTTGTTTCT
TGATAAATTTCATACTTTAAGGGCAGAAACTTTCGCGGGCAGAAACTTTC
GCGTTTTTCGCGTTTTTCGCGTTTTTCGCATTTTTTCGCGAAAGTTTCTG
CCAGGTAAGAAATTAAACAAGAAATTCGCGAAAGTTAATTTCGCGAAAAA
TGAAATCTTGAAAAGTTCGCGAACGTTTTTTCCAAGTTTTAAAAGCCGAG
GTGAGTCAATATTATCGATATTATCGCAGTGACTAGGATTTTTGAAAATT
CACAAAAAACCGCGAAAGTTTCTTCCGTAAATTTTCTTCAAAAAGTAAAA
ATCGCGAAACTTAAATCCGCGAAATTTTGCAACTTTTTGGTCTCGCGAAA
CTTTCTGCCCGCGAAAGTTTAAAGTAGTAATAAGCGTTTCCTTTCGCTAA
AATCGTATTATAGCCGCTAAATCAAATCCTCTAAAAAATTATTCCACCTA
ACATTTCGTATCGCAGCCTCCATAAAAAAACCAAGAGAAAAATGTTTTCA
GACTATCATACAACCCTCAGATCTAAAACTACAATTAAGGTCATAATATT
TGACACAAAAGGAATTCCCCAGCAAAATTTAAAAAGCCGCAATTAGTTCT
TAAGTGCATTAACTTAGGGTTGGAAGGGTAGAGTTTTAAGTCTGAGTTTT
ACGCGACCTAGGATCTGAGGATCCAAAAGATTGTGAATGGTCTGATTAGG
CTGAGAATACAGCCTGGAAATACCTCTCCAAAATCGAAATACCCGATTAG
ATAAAAAGTAGAAAGCCTGAAAAAGTCATTCTCGTCCAAACTTTAAGTTC
TGCAAAACGCTAAAATACCAAGAAATGCTAAAATATTCTTATCATGGTTG
TACATTGTAGAGATTCGGGTTTTCAATGACGTCACAACACCGACGTTGAT
ATTCCATCCCAAAAAATTGGGACCTCATGAAGTTAGGATTAAAGAGATAT
TACCAATGAATACAGACCTGGTACACATGTGTATAATTCACATGTTTTTG
GCTGACATTTCTCATTAAACTCTGACTTCAACTGTTGAGAACCTTTCAGA
AGGTCGTTCACTTCATTTCGTGTTTGATTGACAACGTTGTGATACTTGGT
AATATTTTGCAGAACGTTCAATAATGATGCTTCTGGACCTTCCACCTCGT
TCTGTTTTTTACTCATAGCATTTTTTAAAGTAATAATCATATTGACAGCT
TTTGATAAATCCTCCTCTAAATGTTGCCGACGTAGCTGATATGTTGTGTT
TTCATCACGAAGTTGTTTTTCTACTTCTTGTATTATAGACATTTCAAGTG
ATGTATTTGTAGATCGCCCGTTTATGTTCATGGCAGTGTCATCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048194-exon-scaffold_141-1575043694:242478..242670 | TCONS_00048194-exon-scaffold_141-1575043694:242478..242670 | Clytia hemisphaerica | exon |
| TCONS_00048194-exon-scaffold_141-1575043694:240926..241296 | TCONS_00048194-exon-scaffold_141-1575043694:240926..241296 | Clytia hemisphaerica | exon |
| TCONS_00048194-exon-scaffold_141-1510915933:242478..242670 | TCONS_00048194-exon-scaffold_141-1510915933:242478..242670 | Clytia hemisphaerica | exon |
| TCONS_00048194-exon-scaffold_141-1510915933:240926..241296 | TCONS_00048194-exon-scaffold_141-1510915933:240926..241296 | Clytia hemisphaerica | exon |
| TCONS_00048194-exon-scaffold_141-1491911889:242478..242670 | TCONS_00048194-exon-scaffold_141-1491911889:242478..242670 | Clytia hemisphaerica | exon |
| TCONS_00048194-exon-scaffold_141-1491911889:240926..241296 | TCONS_00048194-exon-scaffold_141-1491911889:240926..241296 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:240926..242670 - |
Blast
The following BLAST results are available for this feature:
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