TCONS_00048193 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048193
Unique NameTCONS_00048193
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1301

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048193 ID=TCONS_00048193|Name=TCONS_00048193|organism=Clytia hemisphaerica|type=transcript|length=1301bp
CATCCGTTGTTATGACAACAAGAAAGAGAGTGAGTTGGGATTGTGTAAAC
AATGGAAAGAACACGGGGCATGTACCAAACACACCAATTTAATGAAACGG
TTCTGTAGAGCAACGTGCGACATGTGTGACGTGAAAGCATTGCCAGCTGC
TTGCATGGAATCCAAGTTCGGATGTTGTCCTGGTAACAAAATACAAGCTT
TAGGTCCTCGAAATAAAGGCTGTTTTAATGGTTGCCGAGATGGTCGCTTG
TGCCCATTCTTCCCAAACTTCTGTGGTGATGAAGCCAATAAAGAAAcaat
gaagaaattttgtccTTACACATGTCGATATTGCGTACCTGAAGGCAACG
AGCGTGTGGAGATTCTAACCGAAGATAACTTGTAAAAGAGCAATtataaa
aaatcatacaaaGAGACACGTTGGTTTGCTGGCTTAACCAACAATGATTA
CCCGTCTACCATCTTTAAAGGGAGATGGTTCTTCTTAAAGGAATACTTCG
AAACAACCAAAactaaataaagctttttatttCAAGTGAAGGGATATAGT
GTTAATTATAAAAACTTTCTGAAACAGGAAAAgactttttaagattttaa
ttgaGGTATGGCTTTAGAAATCCTTTCATATCTCAAGCATCACATTGAaa
tacaacttgaaattttgcacaaagacagtCTGATAGTTTCTCTAGTATAA
AAACTTTTATAATTCAATGCCAatcatttttggaaatttgtatttAAAAA
TGCTGTTTCCATTTTAGCGAGATCGTATGTTATCTCAAAGTATAGCTTTA
AGGAGAACATTCTCCCTTTAAGGAAAAGCAGCTAAGAAAATAATTGACAG
CTCATGTTATGTTACAGCTAGCTTGCTTATATCACTTTCCAATTGAGAAC
ACATCTTTTCCACAGAATTTTTAGAAGTCGAAACAATTTGCTTTGGAGAA
CTTTGATCTGGTGTAGAAAATGCTGTAGTCGTGAAAATTCATGACTGTGT
AATGTTATACAGCACGAAGATTTGGATAAAAAATAGAAGAGCTACAATTT
AATACAAAACAAATCGATATCAAGTAAAATAGGTAGCTTTGatatatttt
gtaaataatgattttatataattttaccaaaaaaaagttgTTACAAAGTC
AGTACAATAGtgagaaaatccgatttttacggacaaaaaaaatttttccg
ggcATTGcaattttgtatcattgtgcaaaaactTAGATAAAACTGATGAG
CAAATCCCaagagaaaagctggtaacagcagacgaacggacaaacaccgg
t
Run BLAST on NCBI

protein sequence of TCONS_00048193-protein

>TCONS_00048193-protein ID=TCONS_00048193-protein|Name=TCONS_00048193-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
IRCYDNKKESELGLCKQWKEHGACTKHTNLMKRFCRATCDMCDVKALPAA
CMESKFGCCPGNKIQALGPRNKGCFNGCRDGRLCPFFPNFCGDEANKETM
KKFCPYTCRYCVPEGNERVEILTEDNL
Run BLAST on NCBI

transcript from alignment at scaffold_141:208116..211613-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048193 ID=TCONS_00048193|Name=TCONS_00048193|organism=Clytia hemisphaerica|type=transcript|length=3498bp|location=Sequence derived from alignment at scaffold_141:208116..211613- (Clytia hemisphaerica)
CATCCGTTGTTATGACAACAAGAAAGAGAGTGAGTTGGGATTGTGTAAAC
AATGGAAAGAACACGGGGCATGTACCAAACACACCAATTTAATGAAACGG
TTCTGTAGAGCAACGTGCGACATGTGTGGTAAGCCTTATTCGGNNNNNNN
NNNNNTTGTGTAAACAATGGAAAGAACACGGGGCATGTACCAAACACACC
AATTTAATGAAACGGTTCTGTAGAGCAACGTGCGACATGTGTGGTAAGCC
TTACTATTTGCTTTATTCGGGAAATAGTTCATACCCCTATGTTGAGGAGG
TGTGACGTACAGGGTAGTATGGAAAGTAAAAATTCCAGGGGGTCAGGTTT
TTTGCTTTTTTGTGTAAAAATTAACAATGGTCAATAAAATGAGGTTGAAA
ACATTTTCTGGAATAACGCAATTTTTCTGATATTGTCCAAATAAAAACTA
GATTTCAAGCAAACGAAATTTGCCGAATCATCAAATTTTTGCAACTTACT
ATATTTGTCTTTTGTCTTTTTTCTATTCACTAGACGTGAAAGCATTGCCA
GCTGCTTGCATGGAATCCAAGTTCGGATGTTGTCCTGGTAACAAAATACA
AGCTTTAGGTCCTCGAAATAAAGGCTGTTTTAATGGTAAGTCAGCAATAT
CCATTTCGATCCCATTAATTTCCCATAATGCTTCTTGTTCTTTTTGTGAA
ACCATAATTGGCACAAAAATAAAAACTTTTTAGAAAAGCAAATTATACCA
AACTCTTGCGTTATCTGATTTTCAGATGGGGGATTGGCGGCCGCCAAGGC
AAAAGCCCTGGTTGGACCATTGAGTTTCAAGCCCGAAGGGCTAGAGGTCA
ATCTCTAACCTTTCTCAGGCAAGAAAAATTGAAGCCTTAAAATAGGCGCC
GTATTTTTGATGACGGATTGAATCTTGCAATTCCTTTGTCTTCGAGTGAT
ATATTTTTCGAAATTAAGCGGTAAATTTTAGTTTCAATCTGTCATTTGTG
TAAAAACCAGGCGGGTCGCTCAAGGCCGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCAGTCTGTCATTTGTGTAAAAACCAGACGG
GTCGCTCAAGGCCGCGCAACTTTGGTAGGATTTGTTGGCTTCAAATCCTA
CCAAAGAGATTGACCTCTAGCTCTTCGGGCTTGAAACTCAATGGGTTGGA
CCTGCCAATCCCCAACAACGAGGGCTGGGTTATCAGGCCTCCCGCACTGA
TTTATAAAGTCCGAAGGGCTAAATGTCATACTTTAAGCCATCGCAGGCAA
AAAAAGTGAATATCGCAAGAAGAATTTTTTCCATTGTTTCCGGAAATCCT
CGAAGCTTCTGATTGGTCAAGCATTGAAATTCTATTATAATGTCGTGTGA
CGGAGGTAGAATTTCCTACCTAACCACGGCGGCACACTTTTCAGCCAAAG
CACGACATCTAGCCCATCGGGCTTTCTAATCTGTACCTCCCGATGAAAAA
TCCTTGACGCGGTCTCGCAAAATTCCGTAATGTAAACCTTCCAGATGTTG
AAAATTTTCCCGACATTCAGAGCTTTAGCGTGTTGGAATTAAAATTTCTG
CATCTGAGTGCCAGATAAACTCTGGCGTGGAGCCTGATGAGTTGCACGGA
AATATGTATGCAAAGAAAAATATTTTCATTCACCTTCTTGCTTGTTTGCA
TACGACAGGTTGCCGAGATGGTCGCTTGTGCCCATTCTTCCCAAACTTCT
GTGGTGATGAAGCCAATAAAGAAACAATGAAGAAATTTTGTCCTTACACA
TGTCGATATTGCGGTGAGTATGATAGATCCCAACTACTCTGGAAAGAGAA
AGAAAACTTACAATAATAGATAATCTATAGAGAGCCAAGATATTACTGAA
TACCCGAATGAATACCCTTGCAATGTTTTATGAATGTTCTTAAATATTGA
AGGCTTCGAAACCTCGTGTTGTTTTTGTAGAGCCAAAACATGCATTTGAT
GTCATATCGATATCAATAGCAATACCTACCATAACGATTTAGCCCCCGGG
GAGGGGAGGGTACTTAGGCAAATTGAGGGTACGGTATGTGTCGCCCTTAA
GGGTACCTTTTGTGGATTTCCAAAGTCCCGCTAAAAGTCGGAAAAATCAG
AAAATCAAATTTCAGTCCCACCAAGGGTCGTAGAAATAGGAAGACTTCAA
CTTTTTAACCCCCGGAAAGATAAAAACTTGGTCAAATTTGTCCCAATAAG
GTTCGTAAAATTTACAAAATTTTCCTTTGTTTTCTCTTTTTTAGTCCCGG
CAAGGGTCCAAGGGTCGAAAGTCGGGCGGCACCCCCCGTCAGCTAGCCCT
AGTACCACCCCCCCCGGGATTTATCTAAACTGAGCCCGACCCCGATTTGA
ACCTAACAACTCAATTTCTAATTCCGTTGTACACTTCCTTTCCGGTCATA
ATTTATATTGGAAATTTATTCCTCTGTTATAGTACCTGAAGGCAACGAGC
GTGTGGAGATTCTAACCGAAGATAACTTGTAAAAGAGCAATTATAAAAAA
TCATACAAAGAGACACGTTGGTTTGCTGGCTTAACCAACAATGATTACCC
GTCTACCATCTTTAAAGGGAGATGGTTCTTCTTAAAGGAATACTTCGAAA
CAACCAAAACTAAATAAAGCTTTTTATTTCAAGTGAAGGGATATAGTGTT
AATTATAAAAACTTTCTGAAACAGGAAAAGACTTTTTAAGATTTTAATTG
AGGTATGGCTTTAGAAATCCTTTCATATCTCAAGCATCACATTGAAATAC
AACTTGAAATTTTGCACAAAGACAGTCTGATAGTTTCTCTAGTATAAAAA
CTTTTATAATTCAATGCCAATCATTTTTGGAAATTTGTATTTAAAAATGC
TGTTTCCATTTTAGCGAGATCGTATGTTATCTCAAAGTATAGCTTTAAGG
AGAACATTCTCCCTTTAAGGAAAAGCAGCTAAGAAAATAATTGACAGCTC
ATGTTATGTTACAGCTAGCTTGCTTATATCACTTTCCAATTGAGAACACA
TCTTTTCCACAGAATTTTTAGAAGTCGAAACAATTTGCTTTGGAGAACTT
TGATCTGGTGTAGAAAATGCTGTAGTCGTGAAAATTCATGACTGTGTAAT
GTTATACAGCACGAAGATTTGGATAAAAAATAGAAGAGCTACAATTTAAT
ACAAAACAAATCGATATCAAGTAAAATAGGTAGCTTTGATATATTTTGTA
AATAATGATTTTATATAATTTTACCAAAAAAAAGTTGTTACAAAGTCAGT
ACAATAGTGAGAAAATCCGATTTTTACGGACAAAAAAAATTTTTCCGGGC
ATTGCAATTTTGTATCATTGTGCAAAAACTTAGATAAAACTGATGAGCAA
ATCCCAAGAGAAAAGCTGGTAACAGCAGACGAACGGACAAACACCGGT

Coding sequence (CDS) from alignment at scaffold_141:208116..211613-

>TCONS_00048193 ID=TCONS_00048193|Name=TCONS_00048193|organism=Clytia hemisphaerica|type=CDS|length=1536bp|location=Sequence derived from alignment at scaffold_141:208116..211613- (Clytia hemisphaerica)
TACCTGAAGGCAACGAGCGTGTGGAGATTCTAACCGAAGATAACTTGTAA
GTTGCCGAGATGGTCGCTTGTGCCCATTCTTCCCAAACTTCTGTGGTGAT
GAAGCCAATAAAGAAACAATGAAGAAATTTTGTCCTTACACATGTCGATA
TTGCGACGTGAAAGCATTGCCAGCTGCTTGCATGGAATCCAAGTTCGGAT
GTTGTCCTGGTAACAAAATACAAGCTTTAGGTCCTCGAAATAAAGGCTGT
TTTAATGATCCGTTGTTATGACAACAAGAAAGAGAGTGAGTTGGGATTGT
GTAAACAATGGAAAGAACACGGGGCATGTACCAAACACACCAATTTAATG
AAACGGTTCTGTAGAGCAACGTGCGACATGTGTGTACCTGAAGGCAACGA
GCGTGTGGAGATTCTAACCGAAGATAACTTGTAAGTTGCCGAGATGGTCG
CTTGTGCCCATTCTTCCCAAACTTCTGTGGTGATGAAGCCAATAAAGAAA
CAATGAAGAAATTTTGTCCTTACACATGTCGATATTGCGACGTGAAAGCA
TTGCCAGCTGCTTGCATGGAATCCAAGTTCGGATGTTGTCCTGGTAACAA
AATACAAGCTTTAGGTCCTCGAAATAAAGGCTGTTTTAATGATCCGTTGT
TATGACAACAAGAAAGAGAGTGAGTTGGGATTGTGTAAACAATGGAAAGA
ACACGGGGCATGTACCAAACACACCAATTTAATGAAACGGTTCTGTAGAG
CAACGTGCGACATGTGTGTACCTGAAGGCAACGAGCGTGTGGAGATTCTA
ACCGAAGATAACTTGTAAGTTGCCGAGATGGTCGCTTGTGCCCATTCTTC
CCAAACTTCTGTGGTGATGAAGCCAATAAAGAAACAATGAAGAAATTTTG
TCCTTACACATGTCGATATTGCGACGTGAAAGCATTGCCAGCTGCTTGCA
TGGAATCCAAGTTCGGATGTTGTCCTGGTAACAAAATACAAGCTTTAGGT
CCTCGAAATAAAGGCTGTTTTAATGATCCGTTGTTATGACAACAAGAAAG
AGAGTGAGTTGGGATTGTGTAAACAATGGAAAGAACACGGGGCATGTACC
AAACACACCAATTTAATGAAACGGTTCTGTAGAGCAACGTGCGACATGTG
TGTACCTGAAGGCAACGAGCGTGTGGAGATTCTAACCGAAGATAACTTGT
AAGTTGCCGAGATGGTCGCTTGTGCCCATTCTTCCCAAACTTCTGTGGTG
ATGAAGCCAATAAAGAAACAATGAAGAAATTTTGTCCTTACACATGTCGA
TATTGCGACGTGAAAGCATTGCCAGCTGCTTGCATGGAATCCAAGTTCGG
ATGTTGTCCTGGTAACAAAATACAAGCTTTAGGTCCTCGAAATAAAGGCT
GTTTTAATGATCCGTTGTTATGACAACAAGAAAGAGAGTGAGTTGGGATT
GTGTAAACAATGGAAAGAACACGGGGCATGTACCAAACACACCAATTTAA
TGAAACGGTTCTGTAGAGCAACGTGCGACATGTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030674XLOC_030674Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048193-exon-scaffold_141-1575043694:211486..211613TCONS_00048193-exon-scaffold_141-1575043694:211486..211613Clytia hemisphaericaexon
TCONS_00048193-exon-scaffold_141-1575043694:210979..211080TCONS_00048193-exon-scaffold_141-1575043694:210979..211080Clytia hemisphaericaexon
TCONS_00048193-exon-scaffold_141-1575043694:209751..209855TCONS_00048193-exon-scaffold_141-1575043694:209751..209855Clytia hemisphaericaexon
TCONS_00048193-exon-scaffold_141-1575043694:208116..209081TCONS_00048193-exon-scaffold_141-1575043694:208116..209081Clytia hemisphaericaexon
TCONS_00048193-exon-scaffold_141-1510915933:211486..211613TCONS_00048193-exon-scaffold_141-1510915933:211486..211613Clytia hemisphaericaexon
TCONS_00048193-exon-scaffold_141-1510915933:210979..211080TCONS_00048193-exon-scaffold_141-1510915933:210979..211080Clytia hemisphaericaexon
TCONS_00048193-exon-scaffold_141-1510915933:209751..209855TCONS_00048193-exon-scaffold_141-1510915933:209751..209855Clytia hemisphaericaexon
TCONS_00048193-exon-scaffold_141-1510915933:208116..209081TCONS_00048193-exon-scaffold_141-1510915933:208116..209081Clytia hemisphaericaexon
TCONS_00048193-exon-scaffold_141-1491911889:211486..211613TCONS_00048193-exon-scaffold_141-1491911889:211486..211613Clytia hemisphaericaexon
TCONS_00048193-exon-scaffold_141-1491911889:210979..211080TCONS_00048193-exon-scaffold_141-1491911889:210979..211080Clytia hemisphaericaexon
TCONS_00048193-exon-scaffold_141-1491911889:209751..209855TCONS_00048193-exon-scaffold_141-1491911889:209751..209855Clytia hemisphaericaexon
TCONS_00048193-exon-scaffold_141-1491911889:208116..209081TCONS_00048193-exon-scaffold_141-1491911889:208116..209081Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048193-proteinTCONS_00048193-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:208116..211613 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0482358	0	0	0.396426	2.80305	0.0121292	1.84115	1.09949	0	1.07867	1.39275	0.023096	0.0930505	0.00999577	0	0.0445226	0.145555	0.130431	0.20227	0.13797	0.128296	0	0.833545	0.219111	0.196594	0.110973	0.0476404
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003582ShKT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048193 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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