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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048191 ID=TCONS_00048191|Name=TCONS_00048191|organism=Clytia hemisphaerica|type=transcript|length=677bp
GactaaaataaattaatttgagTAGTAGATTCTTTGCTTAACGAAAAAAT
TCATAGAGCACAAGAAAATGACGACTaacaaaaatatagaaaatttcGAC
GTGAACTGACTACTGTTCACACTTACTTCTGAAGATGAAATTCCCCAAta
catttttcacaaaatcgATGCCCGCATTTCACGGCTTGTACTGGTTCTCG
CAAAACCAAAAGACATATTGCACAAGTGATATCGTCTCTATTGATTTCTT
TGGCGTTCTGTACAGAATCTTCTTCTGTTGTTTCAGATACTTCAGATTTT
TCGTCTTCCCAGATGAACGTCACATCAAAACCATACTCTTCTGGTTTACA
AGCTgccatattatttaaaaatctaattttcagcGATCAAGATCGAACTT
TTCACAAATAATTAAAGGATcagattaaaaagaaatttccgTTTCTCTTC
CCTCTCCGAAACTATAGCTTGCTACAGTAAGCTCATATCTCGAtactatc
actttcaaaatacctcttgaacaaaaaaatctatcaaaaaaCAGAATATA
GACAAATCAATGGCCTTGAAATTTAAAGACACAGCATTCCTTAGAAAAAT
GAAACTACTTAGGTAAGAGTGATAGTTCCTTTATAATAACACTGTAGAAC
CTTTCGCCCTAAAAACACACgtttttc Run BLAST on NCBI transcript from alignment at scaffold_141:198821..204130- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048191 ID=TCONS_00048191|Name=TCONS_00048191|organism=Clytia hemisphaerica|type=transcript|length=5310bp|location=Sequence derived from alignment at scaffold_141:198821..204130- (Clytia hemisphaerica)
GACTAAAATAAATTAATTTGAGTAGTAGATTCTTTGCTTAACGAAAAAAT
TCATAGAGCACAAGAAAATGACGACTAACAAAAATATAGAAAATTTCGAC
GTGAACTGACTACTGTTCACACTTACTTCTGAAGATGAAATTCCCCAATA
CATTTTTCACAAAATCGATGCCCGCATTTCACGGCTTGCACTGGTTCTCG
CAAAACCAAAAGACATATTGCACAAGTGATGTCATCTCTATTGATTTCTT
TGGCGTTCTGTACAGAATTTTCTTCTGTTGTTTGAGATATTTCAGATTTT
TCGTCTTCCCAGATGAACGTCACATCAAAACCATACTCTTCTGGTTTACA
AGCTGCCATATTTTTTAAAAATCTATCGGCGACCAGGATCGAACTTTCAC
AAATAGTTATAGGGTCAGATTAAAAAGAATTTTCCGTTTCTCTTCCCTCT
CCAAAACTATAACTTGCTACGGTAAGCTCATATCTCGATACTATCACTTT
CAAAATACCTCTTGAACAAAAAAATCTATCAAAAACAGAATATAGACAAA
TCAAGGGCCTTGAAATTTAAAGACACAGCATTCCTTAGAAAAATGAAACA
ACTTAGGTAAGAGTGATAGTTCCTTTATAATAACACTGTAGAACATTTCG
CCCTAAAAACACACGTTTTTCTCAAGAATTATCCTATAATACGCTATCAT
TTAGATCAGCAATTTGAGCATAAAATCGAAAAATCAGTAAGCCATCAAGG
TTATTCATTTTTTTCGAATTGTTGATTCATTGTTCTTAGTAACAGTTAAT
AAAATAGTGTAATTCAATCTTTTCATATGGGCATTAATGATTGTATTCCA
TATTCACTCATTTTATTTTATTTATTCATAGAATTATTACTCTCGGGTGC
CTAAATAGCCGCCCCCCCCGCTAATTAATTTTTCAAAAATTTTCCACCCA
GGACATTCTTATTCCACCCCCCCCTGCTTATTAATTTTTGGGAAAATGTT
TTTGAAAGTTCCCTCTTTTGTCCTAATTCAGCTGTATTAGCCTCCTTTTC
AAAAATTTTCCATCCAGGACATTTTTATTCCAACCCCCCTGCTTATTAAG
TTTTGAGATTATTTCCAACCCCCTGCTTATTCCAATCCCCCCGGCTATTA
CGTACCCGAGAATTATTAGTTATCTACGAAATGATTTTTGAATTTAGTAA
TTTTTATAAACTCTTCATACATTTACTCTAAAAAGACGACGAAAGTGCAA
TACGTCCAAAATATCCAAAGGTTAAGTCAATTTAAGGTAAAGTAATTACC
ATCGATCATTCTGGTCTAAATGGAGGTCTTGAATTGAAAAGTTGATTAAA
TACGATAAATAATTCGATTGACTGACACGAGGCTCCACCCATAAATACAA
TTTCTTGGAAATGGATAGTTTGTTTCAAATGTAGTTTACACCATTTACTG
AGTATAAGATCAATTCATTTCAAATCTTATTGCAACACTATCATACATAG
TTATGTTCTTGAATAAGCCGTGCTCAAAGGCTGACCGATTACCCACACAG
AAACATGTAAAAGCTGGTCTTTTAAATGAATCTTTCCATTTACCTCCTGC
ATCTGTACTTCTTCTCACAGTTTGGGCAATTTCAACTCCATTAAAGATTA
AAGTGAAAATCAATGATTTCCAAGGCATTGGCCATTCTAAAGTAACGTCA
TAAGGACTCACTCTGTTCTGAAAGTAAACTGATAGACAAGGGTTTTTTTT
GTCTTTATTGGTCTGGCGAAACCCAGAGGAAATACATCCTTTATAACCAT
GCTTAGTAAAAAAACTTGGTGAATTATACTCTCTCCATTCCGTAGCAGCG
TCAAATTTCTCTTTGAAATTTTCGATAGTCCATGTATAGTTACATAGTGA
TGGTGCGCAGATAGCCAAATTTAATTCCCCTTTTACAGCTAAACCTCTAC
CCGATGCTTTAAAAAGGTCGTCTTTTTGATGCTGTTCTTTGACTTTTTCA
ACTTCCTGCTTAGTCAGCATAAATTCTTCTTTCAAATCAAAAAGAGATTT
ATCGGTTGTCTTCAACTTCGTCAACAATTTTTTCTCCAAGGACTTGATGG
CGGTTTGGTTCATCTGAACTTTGATTTCTATTTCGCCGACCCCTTTCAAT
TTCTCTTCTGCAATTTTTAACCGCTCCGCTAATCCTTGAATCATTTTGTC
TTTTGCTTTCAAGTCTCCATCAAGATCCAACCGGACTTTTCCGATTTCGT
TGTCCCTCATTTTCAACTGTTCAGCAAATTCATTTTTCATTTGTTGAGCT
TCAAGACCTTTTGCTGTTAACTTTTGATCGAATTCTTTTTTCATTTTGAA
AATCTCACTTTTCATTTCAAGAGACAAATGCATGTTGGCCGATTGTGCCA
TATGATTATCCAGTTGTAACTTTGTGCCCTGAAACCAAACAATTTAGAGA
CTCTTAGCTTTTCAAATAATATAACAGTTTTTTTAACCTCTATACTTTAC
CGTACTTACTTTAAACAATCCAAACGTTCCTTAAGCCTCAAACGCGCCAA
GATGACAAAAATTCGGATAGTGCTGCGGTACAGCTACTTTGAAAAAAGAC
AAAATAAAGCTAGCACTTCAGCTTCAACATAAGAAAAATTTACCTTAAAG
TAACATCCTGAGTCTTTGTATTCACAAGAGGAGACCATTGGACATACGGT
ATCCACATGATTTGTTATCTAAAGAAGAATCTGTAAACTAAAATGATATG
TCTTACAATTGCAGATGAATTATAACATGTTATAAGATAGGATTTAATCC
AAAAAAATCTCTTGAATTACAAAGTTATTTCCACTGTTGTCGTTTTGAAG
TAAATGTTCGATTTGCGTAAGGGTTCACCTTTACAGATTTGTACTAAAAT
TCCCTCTTAGTAAGATATTTCGAGTTTTTCAACCTCGGGTCTTTCGGGCA
TTTTAAAAATCCGAGTCAAGTAACTCGAAAAAAGAATCATACAGTAAAAA
ACTCGATTTTTTATGGTACACCTCTAAAATACGAAAAATTTAGGGGCGCC
TTAAAAATAAAAGTTTGCTAACTAGAAAAATTAAGGTTCATCATAATCAA
CCGAGTTAATTAACTCGAACGATAACGGTAACCACAAAAAATCGAATTAT
TATAAATCTTCTAAAATGACGTCATACCTCTCAAGTTATGACGTCACAAA
TAGGTAACTAGGGTTTGCCAAACTCGGGCTTTTCTAACTTGGGTTGTTCT
AACAATTTTTATAATTTTTAATTTTTATAACTTGGGTTTTGAGGGCCTCA
CAAAAAGTTATCCCGAAAGTTTTCATGGTTTGTATTCACATATCAAGGCC
TGAAAAACCCAAGTTAAGAAAACCCGGTTTATGACGTCATAACCTTTTTT
TTAGCTCAACTGAAGTTGAGAATCATAAGATGAGATTTCCACTGTCGTTT
TTGAAGCAAATGTTTCATTTGCATAAGAGGTCACCTTTATAGATTCGTAC
TAAAACTCCCTCTTAGTAAGATATTTCGAGTTTTTCAACATCAGCTCTTT
CGGGCCTCTTGAAAATCCGAGTTAACAAACTCAAAAAAACATACACCAAA
AAGACTGGGTTAAAAGATTCCGGAAAACAAATTTTCATAACTCATATTTT
CGTAACAACCGAGTTAACTAACTCGAACGATTAAGGTAACCACAAACAAA
TCGAGTTATTATCATAAATCAAGTTATCTTCTAAAATGACGTCATTTCTC
TCAAGTTATGAAAATAGGTAACTAGGGTTTGCCGAACTCCGGTTTTCAGG
GCCTCACAAAAAGTTATCCCGAGTGTTTTCATGGTTTGTATTCACATATC
GAGGTCTGAAAAACCCGGGTAAAGAAAACCAGAGTTATGACCCGAGGTTT
TTTAAAGTCCTTTAACTCGTGTTTTCCAGGCCTCTCACATATCTTACAAA
AGATAACAAATTGTTCTTACGTTTTTACGGAGGACGAATTCTCCACAATC
CAATTCACAAGGAACGGTCACAAAACCGCAAGTTTTCAGGTGAACCTAAA
ACAATGATTAAGGATTGTTATTATCTATCGCAAAAGAAATCGACCCTAAA
TAGGAAAATTGGCCTAAAGCTTAAGTACGGAAGGGGTTTACTACTAGGTA
TAGATCAACCTCCTCTACCCCTAGGCTCTTCCCCTTTGAATCAAAATCAT
TATAAATACCATCAAGTAGATTCCTCCCCCCTCCCTCCAAGGTGATATGG
TTTCACTTCATAAATTGGCCCTAATGAGAGCATAGCTTAAGTATCCAATT
TAGTAAAAATTTGCGGAAAGTGAAGGGTCTTTAGGATTTTAACACAGTGC
CAGATCCCAGAATTAGAATTTGGAAAGAAAGATTCAAAGTACTATCCCTC
CACTTTTGAAAACTTCTTCTTTCTGCGTACAGATGATATCGAATGAAATA
ACGCCTACAAACCTCTTTCTCTCTGAGCTCATTTTGCCACGTACATCCAT
CAACGAAATTCGGACATCGAATTTTCAAACTGAGTATTTCTCTTTTTTTT
CCCACATCTGGAAAAACTTGAATCTCTTGCCAATCTTTGGGGCATTTCCC
CGGACTAGAATAAAATGATTAACATAAAAGATTCTCCAATGCAATTAATT
TGAGTAGTAGATTCTTTGCTTAACGAAAACTTTTTATAGAACACAAGAAA
ATGACGACCAACAAAAATATAGAAAATTTCGACGTGAACTTACTACTGTT
CACACTTACTTCTGAAGATGAAATTCCCCAATACATTTTTCACAAAATCG
ATGCCCACATTTCACGGCTTGTACTGGTTCTCGCAAAACCAAAAGACATA
TTGCACAAGTGATATCGTCTCTATTGATTTCTTTGGCGTTCTGTACAGAA
TCTTCTTCTGTTGTTTCAGATACTTCAGATTTTTCGTCTTCCCAGATGAA
CGTCACATCAAAACCATACTCTTCTGGTTTACAAGCTGCCATATTATTTA
AAAATCTAATTTTCAGCGATCAAGATCGAACTTTTCACAAATAATTAAAG
GATCAGATTAAAAAGAAATTTCCGTTTCTCTTCCCTCTCCGAAACTATAG
CTTGCTACAGTAAGCTCATATCTCGATACTATCACTTTCAAAATACCTCT
TGAACAAAAAAATCTATCAAAAAACAGAATATAGACAAATCAATGGCCTT
GAAATTTAAAGACACAGCATTCCTTAGAAAAATGAAACTACTTAGGTAAG
AGTGATAGTTCCTTTATAATAACACTGTAGAACCTTTCGCCCTAAAAACA
CACGTTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048191-exon-scaffold_141-1575043694:203956..204130 | TCONS_00048191-exon-scaffold_141-1575043694:203956..204130 | Clytia hemisphaerica | exon |
| TCONS_00048191-exon-scaffold_141-1575043694:198821..199322 | TCONS_00048191-exon-scaffold_141-1575043694:198821..199322 | Clytia hemisphaerica | exon |
| TCONS_00048191-exon-scaffold_141-1510915933:203956..204130 | TCONS_00048191-exon-scaffold_141-1510915933:203956..204130 | Clytia hemisphaerica | exon |
| TCONS_00048191-exon-scaffold_141-1510915933:198821..199322 | TCONS_00048191-exon-scaffold_141-1510915933:198821..199322 | Clytia hemisphaerica | exon |
| TCONS_00048191-exon-scaffold_141-1491911889:203956..204130 | TCONS_00048191-exon-scaffold_141-1491911889:203956..204130 | Clytia hemisphaerica | exon |
| TCONS_00048191-exon-scaffold_141-1491911889:198821..199322 | TCONS_00048191-exon-scaffold_141-1491911889:198821..199322 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:198821..204130 - |
Blast
The following BLAST results are available for this feature:
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