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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048187 ID=TCONS_00048187|Name=TCONS_00048187|organism=Clytia hemisphaerica|type=transcript|length=181bp
AACCGATTCTTATTTACACGCTGATAACTGTTCAGgccagaataagaata
atgctttcCTGCATTATCTGATGTGGAGAATAATCAATGGCttccatcaa
aaaattgaatattcatTCAAGATTGCTGGTCACACTAAATTCAGCTGCAA
CAGATGCTTTGGTGCCTTCAAAAAGAGTTTC Run BLAST on NCBI transcript from alignment at scaffold_141:149182..150454- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048187 ID=TCONS_00048187|Name=TCONS_00048187|organism=Clytia hemisphaerica|type=transcript|length=1273bp|location=Sequence derived from alignment at scaffold_141:149182..150454- (Clytia hemisphaerica)
AACCGATTCTTATTTACACGCTGATAACTGTTCAGGTATAAATACATGTT
TTTTATAAGCATAACGCTTATAAGCTTATTTGGCCTCATTATATTGAAAA
AAAGATTTCTTAAACAATAAATCTATTGTTTTAAACGATTAAAATTTGGG
TCTCAGTATGCTTATAAGTATGTTATGCTTATAAAAAGAAAAACATGTAC
ACGATTATGTATTTTGTGTTTTGGGACAAAAGCATTTCCTGGAACAGCCC
ATATTTTTTATCTTAAACGAGAAAATTGCTACTTTTAAAACAACTTTTCC
AATAATTTCAAAAACTTATGACAATTGAAAATAAACATAAACATTAAGAA
TTAAATTATCATTTATATCAGATTATTAAGCAAACCAGTTATATAATTGT
TTTTCACTTTTTTCAAACTTAGGCCAGAATAAGAATAATGCTTTCCTGCA
TTATCTGATGTGGAGAATAATCAATGGCTTCCATCAAAAAATTGAATATT
CATTCAAGATTGCTGGTCACACTAAATTCAGCTGCAACAGGTACTTAAAT
ACCTTTTTGGTGGGTGCTAAATTTGGCTTAACTGCCAAAACCAATAAATT
TAGTATCCACCAGAATTTCTACCAATAAGGTAGATTGTTTTACTAGACTT
ATCTTTATTAACTTAAGGGTACAAATTTTAGCAGGAACTAATTTTTGCGG
TTTCCGTTTTATAATAATAAAAATAAATTTATACAGAATGAAAAGTTTAA
ACCCTGATAATAATCTATCATACTAAAATACTAAACTTTTAAAGCATTGG
CCTCAAAGCTGTTAACAGTTAATTATTTTATGAAGTTTTCAAGGTTTTAA
TTTTGCAAATGTGGTAATTTTCTTAATGTTGGCCTTAATTACTACAATAT
AAAATGGTATACCTTAAAGGAAGAAATTTTGACGGGAATTTTATTTGGTG
TATGGCCTCAAAAATTTTCAGAGGGAATTTAATTTGGCGGATGGACGAAA
AAACTAAATTTGGCGGGAATTTAATTTGGCGGTTGCTGAAAGATTTAACC
TTAAAATAGCGTAAAAACAAAAAATGCAAAAACATTGAAAAAATTAAATT
TGGCGGATGGCGGGAACTTAATTTGGCAGATTTCGGTCAAATCCGCCAAA
ATTTTAATTCTGAATTTAAGGTATTTCTAAGATCATTTAACTTCCCTTCA
AATCTACCAGGCCAGTATCTACAGTAATTTACTTTTCATTATTAGATGCT
TTGGTGCCTTCAAAAAGAGTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048187-exon-scaffold_141-1575043694:150420..150454 | TCONS_00048187-exon-scaffold_141-1575043694:150420..150454 | Clytia hemisphaerica | exon |
| TCONS_00048187-exon-scaffold_141-1575043694:149915..150032 | TCONS_00048187-exon-scaffold_141-1575043694:149915..150032 | Clytia hemisphaerica | exon |
| TCONS_00048187-exon-scaffold_141-1575043694:149182..149209 | TCONS_00048187-exon-scaffold_141-1575043694:149182..149209 | Clytia hemisphaerica | exon |
| TCONS_00048187-exon-scaffold_141-1510915933:150420..150454 | TCONS_00048187-exon-scaffold_141-1510915933:150420..150454 | Clytia hemisphaerica | exon |
| TCONS_00048187-exon-scaffold_141-1510915933:149915..150032 | TCONS_00048187-exon-scaffold_141-1510915933:149915..150032 | Clytia hemisphaerica | exon |
| TCONS_00048187-exon-scaffold_141-1510915933:149182..149209 | TCONS_00048187-exon-scaffold_141-1510915933:149182..149209 | Clytia hemisphaerica | exon |
| TCONS_00048187-exon-scaffold_141-1491911889:150420..150454 | TCONS_00048187-exon-scaffold_141-1491911889:150420..150454 | Clytia hemisphaerica | exon |
| TCONS_00048187-exon-scaffold_141-1491911889:149915..150032 | TCONS_00048187-exon-scaffold_141-1491911889:149915..150032 | Clytia hemisphaerica | exon |
| TCONS_00048187-exon-scaffold_141-1491911889:149182..149209 | TCONS_00048187-exon-scaffold_141-1491911889:149182..149209 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:149182..150454 - |
Blast
The following BLAST results are available for this feature:
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