TCONS_00048185 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048185
Unique NameTCONS_00048185
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length392

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048185 ID=TCONS_00048185|Name=TCONS_00048185|organism=Clytia hemisphaerica|type=transcript|length=392bp
aaagaaattgtcaaaGAGGGTTTGACTTCAATGATAATCAACAAGCAAAG
tggTGGTATGAATAATTGGAAGGTGGTAAATGATGCAATCTCATTAGGAG
GAAAAAGCGATACATTCATAGCATCTGAAGAATTGAAAGGTCAAGTACAA
CTCTACAATATATCTAACAGCGCTGAAAAATATTACAAGATTCGTAAGAA
CAAGGTCACCTATTCAAGTGTAGAGTACAAACACGCAACCAAAACTATCA
ACTATGTTGCAGAGCTTTCAATTAATGAGTCAAAACTATTTGTTGAGATA
CAATACTTTCTATGTGATCAGGGTCGTGTTTATCTTTGTGGAAAGGAGAT
TCCACGGAAAGAAAATTGGTGTATTTTGAAGGAGTGGCACAG
Run BLAST on NCBI

protein sequence of TCONS_00048185-protein

>TCONS_00048185-protein ID=TCONS_00048185-protein|Name=TCONS_00048185-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
KEIVKEGLTSMIINKQSGGMNNWKVVNDAISLGGKSDTFIASEELKGQVQ
LYNISNSAEKYYKIRKNKVTYSSVEYKHATKTINYVAELSINESKLFVEI
QYFLCDQGRVYLCGKEIPRKENWCILKEWH
Run BLAST on NCBI

transcript from alignment at scaffold_141:70665..71252-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048185 ID=TCONS_00048185|Name=TCONS_00048185|organism=Clytia hemisphaerica|type=transcript|length=588bp|location=Sequence derived from alignment at scaffold_141:70665..71252- (Clytia hemisphaerica)
AAAGAAATTGTCAAAGAGGGTTTGACTTCAATGATAATCAACAAGCAAAG
GTATTGAAAATTCTCATTTCAGGTTCTTCCCAACCTGATTGTAAGATTGA
ACCTTTTGTCGTAATGGTTAAGCACCTTTGGATGGATCTAAAAAAGGTTT
TATTTTATTCTTCGCGACCATGAGAGAGAGATTTCTTATATTTATTTTTT
TTATTAAAAAAAGTCCAAATACCAACATCCAAATTAATTTTTTCAGTGGT
GGTATGAATAATTGGAAGGTGGTAAATGATGCAATCTCATTAGGAGGAAA
AAGCGATACATTCATAGCATCTGAAGAATTGAAAGGTCAAGTACAACTCT
ACAATATATCTAACAGCGCTGAAAAATATTACAAGATTCGTAAGAACAAG
GTCACCTATTCAAGTGTAGAGTACAAACACGCAACCAAAACTATCAACTA
TGTTGCAGAGCTTTCAATTAATGAGTCAAAACTATTTGTTGAGATACAAT
ACTTTCTATGTGATCAGGGTCGTGTTTATCTTTGTGGAAAGGAGATTCCA
CGGAAAGAAAATTGGTGTATTTTGAAGGAGTGGCACAG

Coding sequence (CDS) from alignment at scaffold_141:70665..71252-

>TCONS_00048185 ID=TCONS_00048185|Name=TCONS_00048185|organism=Clytia hemisphaerica|type=CDS|length=780bp|location=Sequence derived from alignment at scaffold_141:70665..71252- (Clytia hemisphaerica)
TGGTGGTATGAATAATTGGAAGGTGGTAAATGATGCAATCTCATTAGGAG
GAAAAAGCGATACATTCATAGCATCTGAAGAATTGAAAGGTCAAGTACAA
CTCTACAATATATCTAACAGCGCTGAAAAATATTACAAGATTCGTAAGAA
CAAGGTCACCTATTCAAGTGTAGAGTACAAACACGCAACCAAAACTATCA
ACTATGTTGCAGAGCTTTCAATTAATGAGTCAAAACTATTTGTTGAGATA
CAATACTTTCTATGTGATCAGGGTCGTGTTTATCTTTGTGGAAAGGAGAT
TCCACGGAAAGAAAATTGGTGTATTTTGAAGGAGTGGCACAAAGAAATTG
TCAAAGAGGGTTTGACTTCAATGATAATCAACAAGCAAAGTGGTGGTATG
AATAATTGGAAGGTGGTAAATGATGCAATCTCATTAGGAGGAAAAAGCGA
TACATTCATAGCATCTGAAGAATTGAAAGGTCAAGTACAACTCTACAATA
TATCTAACAGCGCTGAAAAATATTACAAGATTCGTAAGAACAAGGTCACC
TATTCAAGTGTAGAGTACAAACACGCAACCAAAACTATCAACTATGTTGC
AGAGCTTTCAATTAATGAGTCAAAACTATTTGTTGAGATACAATACTTTC
TATGTGATCAGGGTCGTGTTTATCTTTGTGGAAAGGAGATTCCACGGAAA
GAAAATTGGTGTATTTTGAAGGAGTGGCACAAAGAAATTGTCAAAGAGGG
TTTGACTTCAATGATAATCAACAAGCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030667XLOC_030667Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048185-proteinTCONS_00048185-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048185-exon-scaffold_141-1575043694:71203..71252TCONS_00048185-exon-scaffold_141-1575043694:71203..71252Clytia hemisphaericaexon
TCONS_00048185-exon-scaffold_141-1575043694:70665..71006TCONS_00048185-exon-scaffold_141-1575043694:70665..71006Clytia hemisphaericaexon
TCONS_00048185-exon-scaffold_141-1510915933:71203..71252TCONS_00048185-exon-scaffold_141-1510915933:71203..71252Clytia hemisphaericaexon
TCONS_00048185-exon-scaffold_141-1510915933:70665..71006TCONS_00048185-exon-scaffold_141-1510915933:70665..71006Clytia hemisphaericaexon
TCONS_00048185-exon-scaffold_141-1491911889:71203..71252TCONS_00048185-exon-scaffold_141-1491911889:71203..71252Clytia hemisphaericaexon
TCONS_00048185-exon-scaffold_141-1491911889:70665..71006TCONS_00048185-exon-scaffold_141-1491911889:70665..71006Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:70665..71252 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.82714	2.76927	2.6649	3.81736	1.49848	0	0.815937	0	1.35141	0.677685	0	0	0	0	0	0	0.187442	0	0.140437	0	0.416294	1.94039	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048185 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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