TCONS_00048183 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048183
Unique NameTCONS_00048183
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length254

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048183 ID=TCONS_00048183|Name=TCONS_00048183|organism=Clytia hemisphaerica|type=transcript|length=254bp
GAAAATCTCCTTGACATTGCCAGCAGTGGTGAGGCAGAGGGTATCTTCTT
TTGTGCGACATTCCGGCTCATACAATATAACACCTCCATCGTTCGATTCT
TCGAGCATGGTTGTTACAAAGGTGCTATGAAAAGttcGATGCAAGAGACC
ATTAACACTATGATTGAAGACGAAAACTGGCATTACATTGAAGTTTTCAA
TGATCATGATGTGGAGAACAAATTGAAGCGGGAATCTCTACtcaaaaaga
agat
Run BLAST on NCBI

transcript from alignment at scaffold_141:17163..17629-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048183 ID=TCONS_00048183|Name=TCONS_00048183|organism=Clytia hemisphaerica|type=transcript|length=467bp|location=Sequence derived from alignment at scaffold_141:17163..17629- (Clytia hemisphaerica)
GAAAATCTCCTTGACATTGCCAGCAGTGGTGAGGCAGAGGGTATCTTCTT
TTGTGCGACATTCCGGCTCATACAATATAACACCTCCATCGTTCGATTCT
TCGAGCATGGTTGTTACAAAGGTGCTATGAAAAGGTTAAATGCATAATAC
ATCTTTTGTGTAAATTGTTATCTTCATAGCATACGTATTCTGCTTTTTAT
CTTTATACACAAGTAAAAAAATTACATTTCGTTTATTATACGAGCCCTGC
AGATTTCTTTGTCGAATCGAATCTTACTTATTATTGTTATTAGTGGCTAC
ATCCTAAGAACTTTACTACTATGACCTCTCATTTTTTAAATTTTCAGTTC
GATGCAAGAGACCATTAACACTATGATTGAAGACGAAAACTGGCATTACA
TTGAAGTTTTCAATGATCATGATGTGGAGAACAAATTGAAGCGGGAATCT
CTACTCAAAAAGAAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030665XLOC_030665Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048183-exon-scaffold_141-1575043694:17496..17629TCONS_00048183-exon-scaffold_141-1575043694:17496..17629Clytia hemisphaericaexon
TCONS_00048183-exon-scaffold_141-1575043694:17163..17282TCONS_00048183-exon-scaffold_141-1575043694:17163..17282Clytia hemisphaericaexon
TCONS_00048183-exon-scaffold_141-1510915933:17496..17629TCONS_00048183-exon-scaffold_141-1510915933:17496..17629Clytia hemisphaericaexon
TCONS_00048183-exon-scaffold_141-1510915933:17163..17282TCONS_00048183-exon-scaffold_141-1510915933:17163..17282Clytia hemisphaericaexon
TCONS_00048183-exon-scaffold_141-1491911889:17496..17629TCONS_00048183-exon-scaffold_141-1491911889:17496..17629Clytia hemisphaericaexon
TCONS_00048183-exon-scaffold_141-1491911889:17163..17282TCONS_00048183-exon-scaffold_141-1491911889:17163..17282Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:17163..17629 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.719947	0	0	0.797508	11.6507	6.13768	12.9585	6.93233	3.72872	8.92338	4.87111	3.20613	6.2629	6.80765	3.26976	4.70043	1.08092	3.5118	2.29596	1.54016	4.17652	2.38819	0	1.7105	3.86488	4.82904	3.31023	0	1.59817	2.90888
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048183 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top