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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048157 ID=TCONS_00048157|Name=TCONS_00048157|organism=Clytia hemisphaerica|type=transcript|length=970bp
CACTGCCATCAAATCGTTGGAGAAAAAATTGCTGACGAAGTTGAAGACAA
CCGATAGAtctctttttgatttgaaagaagAATTTATGCTGACTAAGCAG
GAGGTTGAAAAAGTCAAACAACAGCATCAAAAAGATGAATTAAATTTGGA
TATCTGCGCACCATCACTATTTAACTATATATGGACTatcgaaaatttcg
aaaagaaaattgacGCTGGTACGAAATGGACATATAGGACATATAGTTCA
GCAAGTTTTTTTGCTAAGCATGGTTATAAAGGATGTATTTCCTCCATGTT
TCGCGAGACCAATCAAGACAACATATACACTTATGTGTCAGTTTTCTTTA
ATAATGAGGTGGGACCTCATGACGATACTCTAGAATGGCCAATGCCTTGG
AAATCATTGATTTTCACTTTGATATTTAATGGAGTTGAAATTGCTCAAAC
TGTGAGAAGAAGTACAGATGAAGGAGGTAGATGGAAAGATTCATTTAAAA
GACCATGTAATGTATGTGCTTACCGGCTTGGAAATCCGTCAGCATTTGAG
CACGGCTTATTCAAGGACATAACTATGAATGATAGTGTTACAATAAGATT
TGAAATGAATTAATCTTCTAGTCATTAATTGGTGTAAATGTCGTTATATA
TTACGTTTTCGtcgtctttttagagtaaaTGTATGAAGAGTTTATAAAGA
TTAGAAATACGGGGgcgttggaaaattttcaaatttagttCGATAACCTC
GAACAAATACCAAAACAACGTCTAGtctgtccatatcttctgacgactgg
acgacagatgaagattAGACAATAtttaataaattctaaaattatttcgt
agataattaattaataattctatgaataaattAAGTAAAGTGAATGAATA
TGGAATGCAATCATTAATGCttatatgaaaatttgaataatttctTGAAA
CTGTTACTAAGAACAATGAA Run BLAST on NCBI transcript from alignment at scaffold_141:197755..198724+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048157 ID=TCONS_00048157|Name=TCONS_00048157|organism=Clytia hemisphaerica|type=transcript|length=970bp|location=Sequence derived from alignment at scaffold_141:197755..198724+ (Clytia hemisphaerica)
CACTGCCATCAAATCGTTGGAGAAAAAATTGCTGACGAAGTTGAAGACAA
CCGATAGAtctctttttgatttgaaagaagAATTTATGCTGACTAAGCAG
GAGGTTGAAAAAGTCAAACAACAGCATCAAAAAGATGAATTAAATTTGGA
TATCTGCGCACCATCACTATTTAACTATATATGGACTatcgaaaatttcg
aaaagaaaattgacGCTGGTACGAAATGGACATATAGGACATATAGTTCA
GCAAGTTTTTTTGCTAAGCATGGTTATAAAGGATGTATTTCCTCCATGTT
TCGCGAGACCAATCAAGACAACATATACACTTATGTGTCAGTTTTCTTTA
ATAATGAGGTGGGACCTCATGACGATACTCTAGAATGGCCAATGCCTTGG
AAATCATTGATTTTCACTTTGATATTTAATGGAGTTGAAATTGCTCAAAC
TGTGAGAAGAAGTACAGATGAAGGAGGTAGATGGAAAGATTCATTTAAAA
GACCATGTAATGTATGTGCTTACCGGCTTGGAAATCCGTCAGCATTTGAG
CACGGCTTATTCAAGGACATAACTATGAATGATAGTGTTACAATAAGATT
TGAAATGAATTAATCTTCTAGTCATTAATTGGTGTAAATGTCGTTATATA
TTACGTTTTCGtcgtctttttagagtaaaTGTATGAAGAGTTTATAAAGA
TTAGAAATACGGGGgcgttggaaaattttcaaatttagttCGATAACCTC
GAACAAATACCAAAACAACGTCTAGtctgtccatatcttctgacgactgg
acgacagatgaagattAGACAATAtttaataaattctaaaattatttcgt
agataattaattaataattctatgaataaattAAGTAAAGTGAATGAATA
TGGAATGCAATCATTAATGCttatatgaaaatttgaataatttctTGAAA
CTGTTACTAAGAACAATGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048157-exon-scaffold_141-1491911889:197755..198724 | TCONS_00048157-exon-scaffold_141-1491911889:197755..198724 | Clytia hemisphaerica | exon |
| TCONS_00048157-exon-scaffold_141-1510915933:197755..198724 | TCONS_00048157-exon-scaffold_141-1510915933:197755..198724 | Clytia hemisphaerica | exon |
| TCONS_00048157-exon-scaffold_141-1575043694:197755..198724 | TCONS_00048157-exon-scaffold_141-1575043694:197755..198724 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:197755..198724 + |
Blast
The following BLAST results are available for this feature:
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