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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048147 ID=TCONS_00048147|Name=TCONS_00048147|organism=Clytia hemisphaerica|type=transcript|length=915bp
TGGGCGCTGCATACAATGATTATGATGGTTTAGCTGAAAGCCTGCTTGCC
GATTCAGATTTCGAAACAGATTCTTCAGAGGACGCAGAAGAAACATCGTC
TGAATCAGAAGAGGAAGCATTAAACTTTACTTCAGAAGACATGGATTTGT
ATTTTCTCGGTGCGGATGAGAGTGACCCAAAGAGATGGAAGAAGGACCAC
GAGTACTTCACAACTGATATAAAACGAGTCGACCCCCTTGTGAGAAAGCT
AACAATGCTAACGGATGAAGATTGGTCCAAACTACCCATCAACAAAGAAG
ATTTGAAACGTTACAACATTAGAAAAGCAAACAGTTGGACTGGTGTGGAC
AGCTTCTACGAGGCATGGctcaaaagaaaagaatcaCAGGAATCGCAAGA
ATCACAATCAACAACCCTAACTCAGCGTATCTCCAACATTTGTGATGCAA
ATGAAAGCGAATGTGATTTAGAAGAGTTATTGACACCACCCGTTCAGAGA
TCTTCAACGAGCACATCCACCCCTTCAAAAGAAGTCACTGGTAACAGCAG
CTCGAAAAGTGATTCGGGCAATCACATAACTCAATTCCTTAAACTGAGAA
ATAACAATCAAGAAAATTCAACTTCGAAATCAGTTAAAAGGCGTTTGTCG
AGAATCGTTAGCTCAAGCGATACTGAGAGTGAACTAGAGCAAGCTTTAAC
GGTCTCAGCcccgaaaaaatcaaaaactctagATAGTCGTGAAACAGGAG
ATATAAAACCTGAAATTCTCTTCCAACCTACATTCAACTCGACCACTACA
ATACAAATTTCTACGGACGAAAAAGATGATAAGGCTGCATTACAGAAAAG
TTTATTCAAAACAAACACATGTGTACCATACGAAGAAGCACTAATTATAT
CCTCCTCTGATGAAG Run BLAST on NCBI protein sequence of TCONS_00048147-protein >TCONS_00048147-protein ID=TCONS_00048147-protein|Name=TCONS_00048147-protein|organism=Clytia hemisphaerica|type=polypeptide|length=304bp
GAAYNDYDGLAESLLADSDFETDSSEDAEETSSESEEEALNFTSEDMDLY
FLGADESDPKRWKKDHEYFTTDIKRVDPLVRKLTMLTDEDWSKLPINKED
LKRYNIRKANSWTGVDSFYEAWLKRKESQESQESQSTTLTQRISNICDAN
ESECDLEELLTPPVQRSSTSTSTPSKEVTGNSSSKSDSGNHITQFLKLRN
NNQENSTSKSVKRRLSRIVSSSDTESELEQALTVSAPKKSKTLDSRETGD
IKPEILFQPTFNSTTTIQISTDEKDDKAALQKSLFKTNTCVPYEEALIIS
SSDE Run BLAST on NCBI transcript from alignment at scaffold_141:133225..134382+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048147 ID=TCONS_00048147|Name=TCONS_00048147|organism=Clytia hemisphaerica|type=transcript|length=1158bp|location=Sequence derived from alignment at scaffold_141:133225..134382+ (Clytia hemisphaerica)
TGGGCGCTGCATACAATGATTATGATGGTTTAGCTGAAAGCCTGCTTGCC
GATTCAGATTTCGAAACAGATTCTTCAGAGGACGCAGAAGAAACATCGTC
TGAATCAGAAGAGGAAGCATTAAACTTTACTTCAGAAGACATGGATTTGT
ATTTTCTCGGTGCGGATGAGAGTGACCCAAAGAGATGGAAGAAGGACCAC
GAGTACTTCACAACTGATATAAAACGAGTCGACCCCCTTGTGAGAAAGCT
AACAATGCTAACGGATGAAGATTGGTCCAAACTACCCATCAACAAAGAAG
ATTTGAAACGGTTAGTGCCTCTATAATCCATTTTTTATCTAGTAAACTGT
TTGACAAGTGATTCAGATCAACAGGCTCAACTGTAAAGAAAAACGTTTTG
CACTTGTGCACGCATATCCTTTAAAGAATCAAGAAGCTATGAATTCATTC
TTTCTAGAAATGAATATCTTTTCAGAACTCAAACTAGAACTCAATGATTA
ATCAAAGTTTTTATTCCTGTCAAAATGTAACCGTTACAACCTTTACTTTT
TAGTTACAACATTAGAAAAGCAAACAGTTGGACTGGTGTGGACAGCTTCT
ACGAGGCATGGctcaaaagaaaagaatcaCAGGAATCGCAAGAATCACAA
TCAACAACCCTAACTCAGCGTATCTCCAACATTTGTGATGCAAATGAAAG
CGAATGTGATTTAGAAGAGTTATTGACACCACCCGTTCAGAGATCTTCAA
CGAGCACATCCACCCCTTCAAAAGAAGTCACTGGTAACAGCAGCTCGAAA
AGTGATTCGGGCAATCACATAACTCAATTCCTTAAACTGAGAAATAACAA
TCAAGAAAATTCAACTTCGAAATCAGTTAAAAGGCGTTTGTCGAGAATCG
TTAGCTCAAGCGATACTGAGAGTGAACTAGAGCAAGCTTTAACGGTCTCA
GCcccgaaaaaatcaaaaactctagATAGTCGTGAAACAGGAGATATAAA
ACCTGAAATTCTCTTCCAACCTACATTCAACTCGACCACTACAATACAAA
TTTCTACGGACGAAAAAGATGATAAGGCTGCATTACAGAAAAGTTTATTC
AAAACAAACACATGTGTACCATACGAAGAAGCACTAATTATATCCTCCTC
TGATGAAG Coding sequence (CDS) from alignment at scaffold_141:133225..134382+ >TCONS_00048147 ID=TCONS_00048147|Name=TCONS_00048147|organism=Clytia hemisphaerica|type=CDS|length=1824bp|location=Sequence derived from alignment at scaffold_141:133225..134382+ (Clytia hemisphaerica)
GGCGCTGCATACAATGATTATGATGGTTTAGCTGAAAGCCTGCTTGCCGA
TTCAGATTTCGAAACAGATTCTTCAGAGGACGCAGAAGAAACATCGTCTG
AATCAGAAGAGGAAGCATTAAACTTTACTTCAGAAGACATGGATTTGTAT
TTTCTCGGTGCGGATGAGAGTGACCCAAAGAGATGGAAGAAGGACCACGA
GTACTTCACAACTGATATAAAACGAGTCGACCCCCTTGTGAGAAAGCTAA
CAATGCTAACGGATGAAGATTGGTCCAAACTACCCATCAACAAAGAAGAT
TTGAAACGTTACAACATTAGAAAAGCAAACAGTTGGACTGGTGTGGACAG
CTTCTACGAGGCATGGctcaaaagaaaagaatcaCAGGAATCGCAAGAAT
CACAATCAACAACCCTAACTCAGCGTATCTCCAACATTTGTGATGCAAAT
GAAAGCGAATGTGATTTAGAAGAGTTATTGACACCACCCGTTCAGAGATC
TTCAACGAGCACATCCACCCCTTCAAAAGAAGTCACTGGTAACAGCAGCT
CGAAAAGTGATTCGGGCAATCACATAACTCAATTCCTTAAACTGAGAAAT
AACAATCAAGAAAATTCAACTTCGAAATCAGTTAAAAGGCGTTTGTCGAG
AATCGTTAGCTCAAGCGATACTGAGAGTGAACTAGAGCAAGCTTTAACGG
TCTCAGCcccgaaaaaatcaaaaactctagATAGTCGTGAAACAGGAGAT
ATAAAACCTGAAATTCTCTTCCAACCTACATTCAACTCGACCACTACAAT
ACAAATTTCTACGGACGAAAAAGATGATAAGGCTGCATTACAGAAAAGTT
TATTCAAAACAAACACATGTGTACCATACGAAGAAGCACTAATTATATCC
TCCTCTGATGAAGGCGCTGCATACAATGATTATGATGGTTTAGCTGAAAG
CCTGCTTGCCGATTCAGATTTCGAAACAGATTCTTCAGAGGACGCAGAAG
AAACATCGTCTGAATCAGAAGAGGAAGCATTAAACTTTACTTCAGAAGAC
ATGGATTTGTATTTTCTCGGTGCGGATGAGAGTGACCCAAAGAGATGGAA
GAAGGACCACGAGTACTTCACAACTGATATAAAACGAGTCGACCCCCTTG
TGAGAAAGCTAACAATGCTAACGGATGAAGATTGGTCCAAACTACCCATC
AACAAAGAAGATTTGAAACGTTACAACATTAGAAAAGCAAACAGTTGGAC
TGGTGTGGACAGCTTCTACGAGGCATGGctcaaaagaaaagaatcaCAGG
AATCGCAAGAATCACAATCAACAACCCTAACTCAGCGTATCTCCAACATT
TGTGATGCAAATGAAAGCGAATGTGATTTAGAAGAGTTATTGACACCACC
CGTTCAGAGATCTTCAACGAGCACATCCACCCCTTCAAAAGAAGTCACTG
GTAACAGCAGCTCGAAAAGTGATTCGGGCAATCACATAACTCAATTCCTT
AAACTGAGAAATAACAATCAAGAAAATTCAACTTCGAAATCAGTTAAAAG
GCGTTTGTCGAGAATCGTTAGCTCAAGCGATACTGAGAGTGAACTAGAGC
AAGCTTTAACGGTCTCAGCcccgaaaaaatcaaaaactctagATAGTCGT
GAAACAGGAGATATAAAACCTGAAATTCTCTTCCAACCTACATTCAACTC
GACCACTACAATACAAATTTCTACGGACGAAAAAGATGATAAGGCTGCAT
TACAGAAAAGTTTATTCAAAACAAACACATGTGTACCATACGAAGAAGCA
CTAATTATATCCTCCTCTGATGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048147-exon-scaffold_141-1491911889:133225..133534 | TCONS_00048147-exon-scaffold_141-1491911889:133225..133534 | Clytia hemisphaerica | exon |
| TCONS_00048147-exon-scaffold_141-1510915933:133225..133534 | TCONS_00048147-exon-scaffold_141-1510915933:133225..133534 | Clytia hemisphaerica | exon |
| TCONS_00048147-exon-scaffold_141-1575043694:133225..133534 | TCONS_00048147-exon-scaffold_141-1575043694:133225..133534 | Clytia hemisphaerica | exon |
| TCONS_00048147-exon-scaffold_141-1491911889:133778..134382 | TCONS_00048147-exon-scaffold_141-1491911889:133778..134382 | Clytia hemisphaerica | exon |
| TCONS_00048147-exon-scaffold_141-1510915933:133778..134382 | TCONS_00048147-exon-scaffold_141-1510915933:133778..134382 | Clytia hemisphaerica | exon |
| TCONS_00048147-exon-scaffold_141-1575043694:133778..134382 | TCONS_00048147-exon-scaffold_141-1575043694:133778..134382 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:133225..134382 + |
Blast
The following BLAST results are available for this feature:
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