TCONS_00048146 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048146
Unique NameTCONS_00048146
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1713

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048146 ID=TCONS_00048146|Name=TCONS_00048146|organism=Clytia hemisphaerica|type=transcript|length=1713bp
atATTGCAAGATTGACTAAGCATAGAGTTCCATCAATCAATGTTTCACAT
ATTTCTATACTTACTCCTATGGCAAAATGTTCAAGCCTAGAGTGTTCCAT
CAATGTTCcacagatttttatttttaatcatatTGCAAAAATGATCAAGC
TTAGAGTTCAACTAATCAATGTTCCACATATTTCTACACTAACTCCTATG
GCAAAATTAACCAAGCCTAGAGTGTTCCATCAATGTTCCACAGCTTTCTA
TACTGACTCCTATGGCAAAATTGATCAAGCCTAGAGTGTTCCATCAATGT
TCcacatatttttatttttactcatATTGCAAAAATGATCAAGCTTAGAG
TTCCATTAATCAATGTTCCACATATTTCTATACTAACTCCTATGGCAATA
TTAACCAAGCCTAGAGTGTTCCATCATTTTCTACAGATTTCTAttaaaat
tatgaataaaaGGGAAGGTGTTAAAGTGGTTGCAAAGGGAGGAAGGGAGG
ACCACTGAAAAAAAGCCAGATGCTCCATCAAATGACGATTCAGACAACCT
ATATTCAAATTAGCCCTATGtgaacatatttttaaattttatgctCTCAT
ATAAAATTTGCATTCTATCTGTTTATCCGATTACATCATTCATTCCAGTA
TACTGTAAAGCAGTAAAAACTGGCTACAATGAGCGTACTTGGCAGTCGTG
ATACACTTACACATAAGTAGAAGTGGTTAGTTGATACGTTTATGTGCAGG
GGATCGGtagaaaatttctttcttattcTATACTGCAAGTGATCAATTCA
TTACAGAGAAAGTAAAAGTGATGAGGTTCTGGACTAAAACcgttttcaat
tcttttgttaaagTTGAGACTTGAGTGAAAGTCACTGATCTCAAAGATTT
GATAGCACAAtctgaaacaaaacaaatttcaattgTATCTATATTTATAA
ATCTCTGTATTCTTTTTAGatatgaaagtgaaagtgaagaaATCGTGAAA
CCTGGCAACAATTAGCAATACGTTGGCAGTCGTATAGTCGCAGGAACGTA
TTTAGAATGTTAAAACTCATCTCCAAatattcaaattaattttttttccc
tcTTTTCAGAGCATCTTCATCTTCATACTTATTGTGATAGGAAATCCAGT
TTCAAGTACTGTTCGTGTTCGTCTATATAAATGAACAAATCTTTCCATCA
GTTTACAAAAGATCATCATCAAAGAAATGGagctggaaattttttttgcg
gacGTATGCGGAAACTTCTCTGATTCGAAAGTTGAATCGAACGTTCGTTT
ATCCAATATCCGACTGTTGAAACAGTATAAAACAAAAGGGCGATTCCATA
CAGCTTTTGTTCTGGTTAAGACGTTAAGCTTACTGTCAACCTCTCCACTC
CCTGGTGTGTAAATAACTTACAACAGACACTAAACTCACAGTCATCATGT
CTTTCGTAACAATCGTTTTGTTCAACTTGGTCGTTGTGACCTTAAAGGCT
CacttaaaagaaagaaagaagtcgAAATCCAAACGGGAGAGACCAGCGAT
ACCGTTGCGGGAGATAAAAACGTTGGACGAAAGCGCCATGTACCTAACGT
ATCTAACGGATGAAGGGGTTTAGTCGGTCCTGCTACCAGACGAAGACAAT
AACATATGGATGCCGAAGGAAGGATGGCCATCAAAACTGTACCTTAGCAA
GCCTGGACATAAA
Run BLAST on NCBI

transcript from alignment at scaffold_141:119908..122791+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048146 ID=TCONS_00048146|Name=TCONS_00048146|organism=Clytia hemisphaerica|type=transcript|length=2884bp|location=Sequence derived from alignment at scaffold_141:119908..122791+ (Clytia hemisphaerica)
atATTGCAAGATTGACTAAGCATAGAGTTCCATCAATCAATGTTTCACAT
ATTTCTATACTTACTCCTATGGCAAAATGTTCAAGCCTAGAGTGTTCCAT
CAATGTTCcacagatttttatttttaatcatatTGCAAAAATGATCAAGC
TTAGAGTTCAACTAATCAATGTTCCACATATTTCTACACTAACTCCTATG
GCAAAATTAACCAAGCCTAGAGTGTTCCATCAATGTTCCACAGCTTTCTA
TACTGACTCCTATGGCAAAATTGATCAAGCCTAGAGTGTTCCATCAATGT
TCcacatatttttatttttactcatATTGCAAAAATGATCAAGCTTAGAG
TTCCATTAATCAATGTTCCACATATTTCTATACTAACTCCTATGGCAATA
TTAACCAAGCCTAGAGTGTTCCATCATTTTCTACAGATTTCTAttaaaat
tatgaataaaaGGGAAGGTGTTAAAGTGGTTGCAAAGGGAGGAAGGGAGG
ACCACTGAAAAAAAGCCAGATGCTCCATCAAATGACGATTCAGACAACCT
ATATTCAAATTAGCCCTATGtgaacatatttttaaattttatgctCTCAT
ATAAAATTTGCATTCTATCTGTTTATCCGATTACATCATTCATTCCAGTA
TACTGTAAAGCAGTAAAAACTGGCTACAATGAGCGTACTTGGCAGTCGTG
ATACACTTACACATAAGTAGAAGTGGTTAGTTGATACGTTTATGTGCAGG
GGATCGGtagaaaatttctttcttattcTATACTGCAAGTGATCAATTCA
TTACAGAGAAAGTAAAAGTGATGAGGTTCTGGACTAAAACcgttttcaat
tcttttgttaaagTTGAGACTTGAGTGAAAGTCACTGATCTCAAAGATTT
GATAGCACAAtctgaaacaaaacaaatttcaattgTATCTATATTTATAA
ATCTCTGTATTCTTTTTAGatatgaaagtgaaagtgaagaaATCGTGAAA
CCTGGCAACAATTAGCAATACGTTGGCAGTCGTATAGTCGCAGGAACGTA
TTTAGAATGTTAAAACTCATCTCCAAatattcaaattaattttttttccc
tcTTTTCAGAGCATCTTCATCTTCATACTTATTGTGATAGGAAATCCAGT
TTCAAGTACTGTTCGTGTTCGTCTATATAAATGAACAAATCTTTCCATCA
GTTTACAAAAGATCATCATCAAAGGTCAGTTCATatttaattttaaatat
tttctaccTCCCTTGTCTTTTCATGGCATAAGGATTTCAAATCCTTGGTT
ATGACATTTGGGTTGAAATATAGGATAACTTTGGAATTTTTAGCGCCCAT
AAACAGGTATTTAAATAATTTGTTCGGAGGTCAAAAATAATTCCtatttt
tgtaacattttcaaGTGTGAATGAAAAACATTTGGGTTTTAGAAACTTTC
ACTGTAAAATCAACTGAAGAGAGATATGGGTGTGAAACCATCCACGCAAG
GCTGACCCAAGCATGTCTTCTAAAATAAGCTCTCTGGTACTATCAgttaa
aaataagcaaaatgtTTCACCATGACTAAGACAGGGAAACATTGCAAGTG
TTCAGGAAAgcttaaaaaatgtttcaatttgaatttGGGGTAAAATTTTG
GCATTTAAAGACCAAACTTTAGTTGCCTTTTATGGGTATCGATTAACCCT
TTTACTTTGTGGATGTACAcagtcttttatttttatctctttttaaaaat
cgagctctaattttgtttttttcggaCGTACAGGGAAGCTTTTCTCATTC
GAACGTTTATTTATCCTTTTTAGAAATCGAGctctaattttatttttcgg
ACGTACAGGGAAGCTTTTCTCATTCGAACGTTCTTTTATCCTTTTTAGAA
ATCGAGctctaattttattttttcggaCGTACAGGGAAACTTCTCATTCG
AACGTTCATTTATCCTTTTTAGAAATCGAGctctaattttatttttcggA
CGTACACGGAAACTTCTTTTTCGAACNTTTTATTTTTCGGACGTACACGG
AAACTTCTTATTCGAACGTTCATTTATCCTTTTTAGAAATCGAGctctaa
ttttatttttcggACGTACACGGAAACTTCTCATTCGAACGTTCTTTTAT
CTCTTTTTTAGAAATGGagctggaaattttttttgcggacGTATGCGGAA
ACTTCTCTGATTCGAAAGTTGAATCGAACGTTCGTTTATCCAATATCCGA
CTGTTGAAACAGTATAAAACAAAAGGGCGATTCCATACAGCTTTTGTTCT
GGTTAAGACGTTAAGCTTACTGTCAACCTCTCCACTCCCTGGTGTGTAAA
TAACTTACAACAGGTATGTctattagtttttacaaagctcTTCTGATTCA
AGTGCGTACTTTTGTCTCTAATAATAAATGAACATCTTTGACTATTCAGA
GATTATCTATTTGTCAAGAAAgcaaaatattctttatttGCCCCAGCCAC
TCTCAAAGAAAAAATCCTTCAACCCTATTCGTTTAGAGAGTACCCAGGCT
AGGTTTATTTTAGGCACTTCGctaatgatatttttttccatttccagACA
CTAAACTCACAGTCATCATGTCTTTCGTAACAATCGTTTTGTTCAACTTG
GTCGTTGTGACCTTAAAGGCTCacttaaaagaaagaaagaagtcgAAATC
CAAACGGGAGAGACCAGCGATACCGTTGCGGGAGATAAAAACGTTGGACG
AAAGCGCCATGTACCTAACGTATCTAACGGATGAAGGGGTTTAGTCGGTC
CTGCTACCAGACGAAGACAATAACATATGGATGCCGAAGGAAGGATGGCC
ATCAAAACTGTACCTTAGCAAGCCTGGACATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030650XLOC_030650Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048146-exon-scaffold_141-1491911889:119908..121131TCONS_00048146-exon-scaffold_141-1491911889:119908..121131Clytia hemisphaericaexon
TCONS_00048146-exon-scaffold_141-1510915933:119908..121131TCONS_00048146-exon-scaffold_141-1510915933:119908..121131Clytia hemisphaericaexon
TCONS_00048146-exon-scaffold_141-1575043694:119908..121131TCONS_00048146-exon-scaffold_141-1575043694:119908..121131Clytia hemisphaericaexon
TCONS_00048146-exon-scaffold_141-1491911889:122069..122270TCONS_00048146-exon-scaffold_141-1491911889:122069..122270Clytia hemisphaericaexon
TCONS_00048146-exon-scaffold_141-1510915933:122069..122270TCONS_00048146-exon-scaffold_141-1510915933:122069..122270Clytia hemisphaericaexon
TCONS_00048146-exon-scaffold_141-1575043694:122069..122270TCONS_00048146-exon-scaffold_141-1575043694:122069..122270Clytia hemisphaericaexon
TCONS_00048146-exon-scaffold_141-1491911889:122505..122791TCONS_00048146-exon-scaffold_141-1491911889:122505..122791Clytia hemisphaericaexon
TCONS_00048146-exon-scaffold_141-1510915933:122505..122791TCONS_00048146-exon-scaffold_141-1510915933:122505..122791Clytia hemisphaericaexon
TCONS_00048146-exon-scaffold_141-1575043694:122505..122791TCONS_00048146-exon-scaffold_141-1575043694:122505..122791Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:119908..122791 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0235889	0	0	0	0	0	0	0	0	0	0.095595	0.109971	0.0313765	0.10321	0.0401837	0.0143744	0	0	0	0	0.0448391	0	0	0	0.0332548	0.070109	0	0	0	0.0266752
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048146 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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