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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048145 ID=TCONS_00048145|Name=TCONS_00048145|organism=Clytia hemisphaerica|type=transcript|length=245bp
TGGGAGGATAATACATCAACAAGCGAGAACTTAAATGGATTGACAGGAGA
ATTCAAAGAAGTTGGTTCCACTGTAACAAAAAACTTTATGGGACAGCCTT
CTAAAGGCGAAATTGAAAGTTTGCATCcTTCGAAGGTAAAAGCTGATGCT
CGTTGCAATGTACTGACAGGCAAATTGCCTTTATTACAGCAAACTACTAC
TGGTAAAAGAGTTTCTGTAAAGAACAAGAAGTTCCTTGATGATGC Run BLAST on NCBI transcript from alignment at scaffold_141:86893..88430+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048145 ID=TCONS_00048145|Name=TCONS_00048145|organism=Clytia hemisphaerica|type=transcript|length=1538bp|location=Sequence derived from alignment at scaffold_141:86893..88430+ (Clytia hemisphaerica)
TGGGAGGATAATACATCAACAAGCGAGAACTTAAATGGATTGACAGGAGA
ATTCAAAGAAGTTGGTTCCACTGTAACAAAAAACTTTATGGGACAGCCTT
CTAAAGGCGAAATTGAAAGTTTGCATCGTaattatcttttcttttctttc
ccaGCAGGTCCACTTTACTTTATTCATTTCGAATATCTTAGTATATGCAT
GTGTCTCTATGTGGTGTCTTATTGAAGATTTTACCCATTTTACAAAGCTA
TCCTTTTTTTGCCTTTAAGAACGTCAATGTGttgtttttggtaaaattgg
gcGGTTCACGTTATAGTCTGTTACCCCCTGTGGACGACATGGATTTCcgt
aacaatttacttttgaaaaacttcaggtttttatgggaaaatcgggaaaa
tcttGGATTTTCCAATACTTTGGCAagaaaatagagaaaattttatggat
tttccaaTACGGCATGGCAAGAAAATagagtaaattttatggattttccg
aaacctttttcaaatttctcaggattcccaagtgaaaataaaatccaaaa
aaccctgtcgtccacagggggtaatatgtttttttctggaactggCCATT
CTTCCCAGACCAAGTAGTACACTTTGCCACTTTTCTTAAGcgaacaaaag
attttcagtacTTTCAGAAGGAACCCTATAAAATCACAATgctataccgt
gagattgggtaacttgcatcagtggaggcaacatgcatagccctcaaatg
aaagacctggctggtcattaaaatacaaagttaatcaaaacaaaaacggt
aaagtagagctgcgagcggagctgtgtagttgtattttaatgaccagcca
ggtctttcatttgagagctatgcatgttagcctccactgatgcaagttac
ccaatctcacggtatatgcCAACTGTTTGTAAAGCCAagcctaaaaaaaa
aaatattttaggaaaaattatGGAAACTTTATAGTCGTTTATGGCGGAGA
ACAAATACATTAAAAGAATTaaacgccaaattaagttcccgccaaatttt
ttATGTTCCACTGTCTGCCGCCAAACTTAATTTATATAATGTACCGCTCC
AAAATTGGGttctcaaaatttcttcctcATTAAAATGATTCCAGTTGAAA
AAAGACTGGTGTTCTCCCAAACAACAACTATTCTGGCAAAGGTCATCACC
ATCAGAAAATTGTtatgtttgcttttttttctggattttttccTGCTTCA
CCGCACTTGAAAATCAGCAAGAAATATGATACAGGAAGACAATCTTTCAA
TGGCCTTCTAAGTGGAAATCTTCAACAGTAAAACAAGTAGcttgaaaata
agaataacATCAAAACTTTGGTAGTCTTAGACCAAAAGCTGGCTATGtta
gatttttatttcttttatagcTTCGAAGGTAAAAGCTGATGCTCGTTGCA
ATGTACTGACAGGCAAATTGCCTTTATTACAGCAAACTACTACTGGTAAA
AGAGTTTCTGTAAAGAACAAGAAGTTCCTTGATGATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048145-exon-scaffold_141-1491911889:86893..87019 | TCONS_00048145-exon-scaffold_141-1491911889:86893..87019 | Clytia hemisphaerica | exon |
| TCONS_00048145-exon-scaffold_141-1510915933:86893..87019 | TCONS_00048145-exon-scaffold_141-1510915933:86893..87019 | Clytia hemisphaerica | exon |
| TCONS_00048145-exon-scaffold_141-1575043694:86893..87019 | TCONS_00048145-exon-scaffold_141-1575043694:86893..87019 | Clytia hemisphaerica | exon |
| TCONS_00048145-exon-scaffold_141-1491911889:88313..88430 | TCONS_00048145-exon-scaffold_141-1491911889:88313..88430 | Clytia hemisphaerica | exon |
| TCONS_00048145-exon-scaffold_141-1510915933:88313..88430 | TCONS_00048145-exon-scaffold_141-1510915933:88313..88430 | Clytia hemisphaerica | exon |
| TCONS_00048145-exon-scaffold_141-1575043694:88313..88430 | TCONS_00048145-exon-scaffold_141-1575043694:88313..88430 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:86893..88430 + |
Blast
The following BLAST results are available for this feature:
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