TCONS_00048136 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048136
Unique NameTCONS_00048136
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length310

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048136 ID=TCONS_00048136|Name=TCONS_00048136|organism=Clytia hemisphaerica|type=transcript|length=310bp
TGTAGTATGATAGTATGACACCCATTCATAATAAAGTGAGGTTATGTTTC
AAATAGTCATGGAAGTGTAGTATGAAATGTGTAAGTCGTCGCTTGTTATG
CTTTTATAGCACGAAGTAGATAGGGAAAGCCACATGTCATCATTCGTGAG
AAATGTAACATCACGTGAATACGTGtaaagcccgttttaacaaatattcc
tcttttggaaaacgggaaatatttaataattgcataagtgtctactttag
aaccaaaacaagtgatacttttatggacctacctggttatgaatttaaca
catatataat
Run BLAST on NCBI

transcript from alignment at scaffold_140:196473..196782

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048136 ID=TCONS_00048136|Name=TCONS_00048136|organism=Clytia hemisphaerica|type=transcript|length=310bp|location=Sequence derived from alignment at scaffold_140:196473..196782 (Clytia hemisphaerica)
attatatatgtgttaaattcataaccaggtaggtccataaaagtatcact
tgttttggttctaaagtagacacttatgcaattattaaatatttcccgtt
ttccaaaagaggaatatttgttaaaacgggctttaCACGTATTCACGTGA
TGTTACATTTCTCACGAATGATGACATGTGGCTTTCCCTATCTACTTCGT
GCTATAAAAGCATAACAAGCGACGACTTACACATTTCATACTACACTTCC
ATGACTATTTGAAACATAACCTCACTTTATTATGAATGGGTGTCATACTA
TCATACTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030641XLOC_030641Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048136-exon-scaffold_140-1491911889:196473..196782TCONS_00048136-exon-scaffold_140-1491911889:196473..196782Clytia hemisphaericaexon
TCONS_00048136-exon-scaffold_140-1510915933:196473..196782TCONS_00048136-exon-scaffold_140-1510915933:196473..196782Clytia hemisphaericaexon
TCONS_00048136-exon-scaffold_140-1575043694:196473..196782TCONS_00048136-exon-scaffold_140-1575043694:196473..196782Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_140supercontigscaffold_140:196473..196782 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.80497	0.870384	2.11652	4.43256	4.56358	3.21748	5.1142	6.83705	2.64205	3.71593	0.880363	0.459999	0.344829	0.977317	1.19268	0.242907	0.543469	1.08156	0	0.390569	0.400666	0	0.402579	0.560214	1.28842	2.38629	3.13849	1.91852	0.779415	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048136 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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