TCONS_00048135 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048135
Unique NameTCONS_00048135
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048135 ID=TCONS_00048135|Name=TCONS_00048135|organism=Clytia hemisphaerica|type=transcript|length=228bp
CAAAAATCCGGGTTTTTGGTGATGCATACGTAAGGGCTAAGGGCCCAAAG
GTTGTAGGCGTCTCACGGGTGATGTGCACCGGCCCCGCTGATGCGGTCCC
GCTAGACCTTTATGCTAAAACGGTATTTTACTGGCTGTAGATTTAcagtt
tgaaatatttaaatatagagtatttcatttatttgaacaaaaaagtcatt
gcaaaaaatattttttagtataCAAACG
Run BLAST on NCBI

transcript from alignment at scaffold_140:183328..183555

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048135 ID=TCONS_00048135|Name=TCONS_00048135|organism=Clytia hemisphaerica|type=transcript|length=228bp|location=Sequence derived from alignment at scaffold_140:183328..183555 (Clytia hemisphaerica)
CGTTTGtatactaaaaaatattttttgcaatgacttttttgttcaaataa
atgaaatactctatatttaaatatttcaaactgTAAATCTACAGCCAGTA
AAATACCGTTTTAGCATAAAGGTCTAGCGGGACCGCATCAGCGGGGCCGG
TGCACATCACCCGTGAGACGCCTACAACCTTTGGGCCCTTAGCCCTTACG
TATGCATCACCAAAAACCCGGATTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030640XLOC_030640Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048135-exon-scaffold_140-1491911889:183328..183555TCONS_00048135-exon-scaffold_140-1491911889:183328..183555Clytia hemisphaericaexon
TCONS_00048135-exon-scaffold_140-1510915933:183328..183555TCONS_00048135-exon-scaffold_140-1510915933:183328..183555Clytia hemisphaericaexon
TCONS_00048135-exon-scaffold_140-1575043694:183328..183555TCONS_00048135-exon-scaffold_140-1575043694:183328..183555Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_140supercontigscaffold_140:183328..183555 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.18106	1.06344	0	0	0	0	0	0	0.918967	0	0	2.17886	0.725276	0.753206	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.23321
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048135 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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