TCONS_00048131 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048131
Unique NameTCONS_00048131
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048131 ID=TCONS_00048131|Name=TCONS_00048131|organism=Clytia hemisphaerica|type=transcript|length=428bp
CGGCTATATCAGCCAATCAAAATGTGCCGCGGGAAAATCGTCAACTTTGA
TTGGCTTGTTTTTGAGCCTAACCTTGAATTCTTAGCAAAATAAGCACGAA
AAGTCTCATTGCAGCTATCGTATGGGAGAACACCGAGTGCACTAACCACC
ACGATTATATCTTATTACCATACTATTTTCGGTTGTTGGTCTCGCAAATT
AGAAATGCTCGGATGATCGGTTGATTCTTCCTCACTGTGCGTGTGAGATC
GAGGAAGGGTCATTCTTTAATAATGGTTCATTGGTGTCACAAGCCCATTA
TTCCCCAGAATATGACCGTCAGAATAAATTCGCCCTTGAATGTGTAGAAT
ATTGTTCATTAGGGCTCGGATTGATTGTGAAAAGAGTTTCCCCATCGTTC
CATCTTTGATGAAGTGTCGGGAGCTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_140:33329..33756

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048131 ID=TCONS_00048131|Name=TCONS_00048131|organism=Clytia hemisphaerica|type=transcript|length=428bp|location=Sequence derived from alignment at scaffold_140:33329..33756 (Clytia hemisphaerica)
AAAAGCTCCCGACACTTCATCAAAGATGGAACGATGGGGAAACTCTTTTC
ACAATCAATCCGAGCCCTAATGAACAATATTCTACACATTCAAGGGCGAA
TTTATTCTGACGGTCATATTCTGGGGAATAATGGGCTTGTGACACCAATG
AACCATTATTAAAGAATGACCCTTCCTCGATCTCACACGCACAGTGAGGA
AGAATCAACCGATCATCCGAGCATTTCTAATTTGCGAGACCAACAACCGA
AAATAGTATGGTAATAAGATATAATCGTGGTGGTTAGTGCACTCGGTGTT
CTCCCATACGATAGCTGCAATGAGACTTTTCGTGCTTATTTTGCTAAGAA
TTCAAGGTTAGGCTCAAAAACAAGCCAATCAAAGTTGACGATTTTCCCGC
GGCACATTTTGATTGGCTGATATAGCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030636XLOC_030636Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048131-exon-scaffold_140-1491911889:33329..33756TCONS_00048131-exon-scaffold_140-1491911889:33329..33756Clytia hemisphaericaexon
TCONS_00048131-exon-scaffold_140-1510915933:33329..33756TCONS_00048131-exon-scaffold_140-1510915933:33329..33756Clytia hemisphaericaexon
TCONS_00048131-exon-scaffold_140-1575043694:33329..33756TCONS_00048131-exon-scaffold_140-1575043694:33329..33756Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_140supercontigscaffold_140:33329..33756 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.33244	2.05367	0	0.179451	0.873858	0.345267	0.41655	0.779938	0.81908	0.845469	0.820633	0.323671	0.215481	0.335668	0.367953	0	0	0.124648	0	0.180204	0.646746	1.00983	1.11447	1.2024	0.521793	0	0.294774	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048131 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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