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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048129 ID=TCONS_00048129|Name=TCONS_00048129|organism=Clytia hemisphaerica|type=transcript|length=325bp
CATAACATCCAACATGCCAGGCGAAGAAAACAGTTGATGTATTAAGGAAC
AATTAAACAAACAggATTATTCGAACGAGCAAAGGAGAAAGTCGTAAAGA
TTTTCTACTGTAATTTTACACTTGCTGAATAAAGACTTATGGGACATTAC
TTTTTGTGCAAAGCATTAAAATTGTATTCAAATGACCTGGAATGTCAAAG
CTTTAGATTGGAGGAAAGCAACACCATTGGAGAACTCACTAATGATTACG
AATAAAAGGACATTGCGGAGAGGACAACAAAcaagtgaaaataatttttg
tagaaataaatttgatttaaaatcc Run BLAST on NCBI transcript from alignment at scaffold_140:249292..250797- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048129 ID=TCONS_00048129|Name=TCONS_00048129|organism=Clytia hemisphaerica|type=transcript|length=1506bp|location=Sequence derived from alignment at scaffold_140:249292..250797- (Clytia hemisphaerica)
CATAACATCCAACATGCCAGGCGAAGAAAACAGTTGATGTATTAAGGAAC
AATTAAACAAACAGTAAGTGAAACATCTATAGTAATCTTTAAAAAGTCTT
GAAAATTTTGCATTCCTTTCTAGCTAAAATTGAGTCAATCTTTAAGTCAC
AACAGACAGGGATTTAAGAAATCGCTCTTAGAGGATTTCACACATGTTAT
TACAGTTTGGAGTGTTGTTTTTTAGTTTGGTATATTGATCATTTATGCCA
ACATTTTGATGCTAGACCGAGTTCAAATCAAATCAAACCTCACATTTTAA
TAAAATTTCTCGGTTAAAGAGGTTTTATTTCAAATTTTAATATATCCTTT
TTTATCTTTGGATAAGTTGAATTTCTATGTTACTTAAATGCCTTGAAAAT
AGAAGATATCGTGATTAGTTGAAATTTCAACTTGTATTCATATTTTTTTC
TTTAGGGATTATTCGAACGAGCAAAGGAGAAAGTCGTAAAGATTTTCTAC
TGTAATTTTACACTTGCTGAATAAAGACTTATGGGACATTACTTTTTGTG
CAAAGCATTAAAATTGTATTCAAATGACCTGGAATGTCAAAGGTAGGCAC
TATGATTTTATTATTCATATTTCACCTTTACATGTTTTTTCTTTTATAAG
CATAACGTTTATAAGCATATGCAGGCTCAGTTTTTGGTACCTAAACAATG
GCTCTATTGTTTGAGAACAATAGAATGATAAGCATAATGCGAGCCTGATG
TATGGGCAGATACTTGCTTATAAAAAAAAACATGTATTACATTTGCTTCA
TAAGGGAGCGGTGTAGGACATTTCTAACCATTCGAATTTGCAAATAATAC
ACCCCTGTCTCACAGCCCCGGTGGAATTTTTTTCCTCAGTGGGATAAAAC
TTCCTGTCAAAATTAAAGTGGGAATAAAAATTATATTGTTTCAAGTTCCA
AGGTTAAGAACTCCATTCGGGATGGTTTTGGAGTGCAGTTTTTAAACATT
AATTTTCGGATTGGGATGAAATCATAATCAATTCTCAGTGGGGCTGAAAT
TCCCGGTAATTGTTCTACCAGGCACCAGGGACGGAATTTTTGCCAAATAT
TCCAGTGGGGCTGGGATCACAGCGGGTCTATNGGCACCAGGGACGGAATT
TTTGCCAAATATTCCAGTGGGGCTGGTATCACAGCGGGTCTGTGACACAG
GGTCTAATAATTAATGAAAATTAATTAAACCTTGTAAATTTTGATTTTAT
TTTAATAATATTGCTAGTAATCTTTGTTGTGATAGGATTGCACAACATAA
AGCACTTTCTGTAAATGCAATTTTAAAGTGCTGAACAATTTCAATAAATA
GTTCTAATTTTTGCTTTGGTCTTTCTTACAGCTTTAGATTGGAGGAAAGC
AACACCATTGGAGAACTCACTAATGATTACGAATAAAAGGACATTGCGGA
GAGGACAACAAACAAGTGAAAATAATTTTTGTAGAAATAAATTTGATTTA
AAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048129-exon-scaffold_140-1575043694:250735..250797 | TCONS_00048129-exon-scaffold_140-1575043694:250735..250797 | Clytia hemisphaerica | exon |
| TCONS_00048129-exon-scaffold_140-1575043694:250206..250342 | TCONS_00048129-exon-scaffold_140-1575043694:250206..250342 | Clytia hemisphaerica | exon |
| TCONS_00048129-exon-scaffold_140-1575043694:249292..249416 | TCONS_00048129-exon-scaffold_140-1575043694:249292..249416 | Clytia hemisphaerica | exon |
| TCONS_00048129-exon-scaffold_140-1510915933:250735..250797 | TCONS_00048129-exon-scaffold_140-1510915933:250735..250797 | Clytia hemisphaerica | exon |
| TCONS_00048129-exon-scaffold_140-1510915933:250206..250342 | TCONS_00048129-exon-scaffold_140-1510915933:250206..250342 | Clytia hemisphaerica | exon |
| TCONS_00048129-exon-scaffold_140-1510915933:249292..249416 | TCONS_00048129-exon-scaffold_140-1510915933:249292..249416 | Clytia hemisphaerica | exon |
| TCONS_00048129-exon-scaffold_140-1491911889:250735..250797 | TCONS_00048129-exon-scaffold_140-1491911889:250735..250797 | Clytia hemisphaerica | exon |
| TCONS_00048129-exon-scaffold_140-1491911889:250206..250342 | TCONS_00048129-exon-scaffold_140-1491911889:250206..250342 | Clytia hemisphaerica | exon |
| TCONS_00048129-exon-scaffold_140-1491911889:249292..249416 | TCONS_00048129-exon-scaffold_140-1491911889:249292..249416 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_140 | supercontig | scaffold_140:249292..250797 - |
Blast
The following BLAST results are available for this feature:
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