TCONS_00048127 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00048127
Unique Name	TCONS_00048127
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1183

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_140:184345..187717-

transcript sequence

>TCONS_00048127 ID=TCONS_00048127|Name=TCONS_00048127|organism=Clytia hemisphaerica|type=transcript|length=1183bp
gaaaGGATTTCTGGTCGGATTGTCGGAAtcgtttgttttggttgtgattt
tttatgaattcttGTTCAAGTTTTCTtgaaatgtcaatttcaggttTATT
GTGGATATGTTaatCATTCATCCTTGACGAACGGAGAATCATTGTATTGG
CGCCATAGAGAGCTTTGAAGATTGCTGCTTCAACAACAGATTACGATATA
CTACTTCCAAGCGAAACGTATGGTACAACCTGTGGAATCTCTTCTGTGGT
CTTTTGGGAAAATGGTGCGGATTAGCATTGCATAGCAGAAAGAATGTAGA
GCTCAGTTAACCATAGTTGATTTTGATGCAGATGATCGTCACTGAAGATT
GATGCAGGATACATCAACGACGCCACAATGCTTGTGCTTATTTTATACTT
GTAAGGAAATAAATAAAGTCtccgtcataaattttgaatcCCCCTCAGAT
CCGCCACTATGTATTGCGCTTACTTCTATAGCTTTTTTAGACCACTTGCA
AagaatttttcatttgaaaaaccTCCTTAAAGCAGAAAGTGCACGTTCAA
GACGAGCTTTTTCTTATTAAAAGTACATAACTCGAAGCTTCCCTGTCTCA
AAGCCccattcagttttcaattggAATAATTTTATGGATTAATATCTCAA
AGTGGTTGAAATTTAGGGATTTTtaaaagcggacaaattttaagtcaaat
tttTAGGTTTGTGACACAGGTGTGTATTGCCGTGGTCATAGTAAGCCATG
GTTGATATTTTTAAAGCAGATTGTATCTATCAAAAGCGTCTGTTGGGTGT
TTGTTTTATAAATTCTTCTCCCAATAAGTTTTGATTAGAAATGGCATCTA
AAGTTTTAAAACTTGAAGAAATGAAATTCTAGTTTTTGGCCTGTTTTATT
CAATTCGAACTGTTTTACAAGAATAATTTTGATGCACAAAACATCTTTTG
GGATACTTTTATTCACCAGGTGTTAATTTATATATCATCATTACAAGCTC
AATATTGACAAAGCTAAGACTTTAGACCAGCGGCCAAGGTAGTGCtctgt
gtcacttcgtagggcaccccttagatcaaggcaaatttttgatattatgc
ccCTAATAGGAAGTcaaatctcctgcagttttcaagtgaatcgattttta
tttcaagggtccttctttactaacggttttttc

Run BLAST on NCBI

transcript from alignment at scaffold_140:184345..187717-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00048127 ID=TCONS_00048127|Name=TCONS_00048127|organism=Clytia hemisphaerica|type=transcript|length=3373bp|location=Sequence derived from alignment at scaffold_140:184345..187717- (Clytia hemisphaerica)
GAAAGGATTTCTGGTCGGATTGTCGGAATCGTTTGTTTTGGTTGTGATTT
TTTATGAATTCTTGTTCAAGTTTTCTTGAAATGTCAATTTCAGGTTTATT
GTGGATATGTTGTAAGGCCTTTGGATGTTTTTAATTTAAAATTTTCAACC
TTGAAAGTATTCTCGGTATGTTTTTACTTTCAACAATATGGGAGTATTTT
TGTACATGTTCCCAAGATATATTTGGATTCGGCAAGGCGTTGAAATGTTC
NCAACCCCGAAAGTATTCTCGATATGTTTTTACTTTCACCAATATGGGAG
TATTTTTGTACATGCTCCCAAGATATATTTTAGATTCTGCAAGGCCTTGA
AATGTTCTTACTACTCTGTATGTCCTGTATCATGCTTGAAATTTGAAAAC
TTTTTCGAAATAAATCCTTACACAATTTTTTTTTGATTTTATATCTTTTC
TTATAGCTCTTTATTTTTATTTTCCAGAATCATTCATCCTTGACGAACGG
AGAATCATTGTATTGGCGCCATAGAGAGCTTTGAAGATTGCTGCTTCAAC
AACAGATTACGATATACTGTAAGTTTATATACCCCTGGATTTATCCGTTT
CTGATGGACGTTTGGTTAAAGAGATTCCTGCATAAAAAATGAAACTTAAN
ATAGAGAGCTTTGAAGATTGCTGCTTCAACAACAGATTACGATATACTGT
AAGTTTATATACCCCTGGATCTATCTGTTTTTTCGGGACCAATTAATGAT
ATTCTGATGGACGTTTGGTTAAAGAGATTCCTGCATAAAAAATCCATGAA
TAGCTATAATGAAAATCGTTTAAAAAATTAAAGTCAAAGTTGTCAACAAT
GATTCTATCCTAAGATATTGACATCAGAAGTTCCAAATTCAAGACATCTG
CACTCTGTGGAAGCCATATTGAAATAATAATTTTAATTTCAAACTCTATG
GTATCCTTTATCCATACTAGGTAAAGATTAGAGAATTGGATAAAAAATTA
AATGACTTTTTATGGTATACAAAACCTCTAAATGTGGTCAATCATACAAA
AATCATTTAGTTCAACTTCGGGTATCCTTCTAGTCTGCTCTCAATTATTT
TAGTATGATGACTAGCTGGTATGAACAGAAGTTTTCCAAATTCAAATTTT
TTCATTTTTGTATGGCTTCCACAAAGTGCAGATGTCTTGAATTTGGAACT
TTAGATGTCAATAACTTGGGATAGAATCGCTGTTGACAACTTTAACTTGA
ATTTTCCAAATGCTTTTCATAATAGCTATGCCCTGACAAATTTTGATTTT
CTGTGCTGGAATCCCTTTAAATACCTTTCAGCCCTACTTGGAAATTAACT
TTTGTTTCATCCCTTCGAAATTCAACGTTTAAAAATTGCATTTCGAAATC
ATTGCCACTGAATTTGCTAACCTTGAAACAAAGGAATTTCTATCCCCATT
GGGATTTTAATAGGAGTAGGAATTATCTCCACTGAGAAGAAAAGTTCCAC
CGGGGCTGTGAAACAGGGGTGTCTATGGTCGTGTTCACACTACAGACCTT
CCTTAATAAAAATGTAGCTAGGAGAATCTTTTGTTGACTATAATACAGAA
CGTGCATTTAACAAAGAGTCGAACGCGTAGTATTGTAATTTTTAATCGAT
CTTCCTTAATTAAGAGTCGTAAGCTCTATTGTCTTAAGGGTAGTGTAGAG
GCTTCCCTTAAAACAAAAGATTTTATTAAGGAAGCATAAACAAAGAATGC
GTGCAGTTAACAAAAAGTTTTACGATTTCAAAAACGAATGAACTGAGGAA
AAAATTAGAAATAGTGTAAACGGTGTTGTTGATGTGTAAGATGAATGCAG
TTATTGAGTAAAACCATTAGAACAAATATGTTTGCGGATTTCAATTGATG
TATGGATACCAATATCAACCAATCACAGGTGAAATCGAAACTCTCAATAA
AAAATCAACCAATGAGAAGCCTTAAGCAAAATCAATTACCGTGTTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGTCATTGTTTTAAGTTT
TAAAGATTGTTCAGCTTTGATTGTCTATGTTAATTATTTTAAAAACCGAT
TTATTCTCTCGTTTTTTTTCAGGAAATCTGTTCATCAAACCACGGCGATA
TTCAAATACTCTGGAAGCATTTTAAACGTTTTTTCTTGTTAGACTTCCAA
GCGAAACGTATGGTACAACCTGTGGAATCTCTTCTGTGGTCTTTTGGGAA
AATGGTGCGGATTAGCATTGCATAGCAGAAAGAATGTAGAGCTCAGTTAA
CCATAGTTGATTTTGATGCAGATGATCGTCACTGAAGATTGATGCAGGAT
ACATCAACGACGCCACAATGCTTGTGCTTATTTTATACTTGTAAGGAAAT
AAATAAAGTCTCCGTCATAAATTTTGAATCCCCCTCAGATCCGCCACTAT
GTATTGCGCTTACTTCTATAGCTTTTTTAGACCACTTGCAAAGAATTTTT
CATTTGAAAAACCTCCTTAAAGCAGAAAGTGCACGTTCAAGACGAGCTTT
TTCTTATTAAAAGTACATAACTCGAAGCTTCCCTGTCTCAAAGCCCCATT
CAGTTTTCAATTGGAATAATTTTATGGATTAATATCTCAAAGTGGTTGAA
ATTTAGGGATTTTTAAAAGCGGACAAATTTTAAGTCAAATTTTTAGGTTT
GTGACACAGGTGTGTATTGCCGTGGTCATAGTAAGCCATGGTTGATATTT
TTAAAGCAGATTGTATCTATCAAAAGCGTCTGTTGGGTGTTTGTTTTATA
AATTCTTCTCCCAATAAGTTTTGATTAGAAATGGCATCTAAAGTTTTAAA
ACTTGAAGAAATGAAATTCTAGTTTTTGGCCTGTTTTATTCAATTCGAAC
TGTTTTACAAGAATAATTTTGATGCACAAAACATCTTTTGGGATACTTTT
ATTCACCAGGTGTTAATTTATATATCATCATTACAAGCTCAATATTGACA
AAGCTAAGACTTTAGACCAGCGGCCAAGGTAGTGCTCTGTGTCACTTCGT
AGGGCACCCCTTAGATCAAGGCAAATTTTTGATATTATGCCCCTAATAGG
AAGTCAAATCTCCTGCAGTTTTCAAGTGAATCGATTTTTATTTCAAGGGT
CCTTCTTTACTAACGGTTTTTTC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_030633	XLOC_030633	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00048127-exon-scaffold_140-1575043694:187607..187717	TCONS_00048127-exon-scaffold_140-1575043694:187607..187717	Clytia hemisphaerica	exon
TCONS_00048127-exon-scaffold_140-1575043694:187150..187240	TCONS_00048127-exon-scaffold_140-1575043694:187150..187240	Clytia hemisphaerica	exon
TCONS_00048127-exon-scaffold_140-1575043694:184345..185325	TCONS_00048127-exon-scaffold_140-1575043694:184345..185325	Clytia hemisphaerica	exon
TCONS_00048127-exon-scaffold_140-1510915933:187607..187717	TCONS_00048127-exon-scaffold_140-1510915933:187607..187717	Clytia hemisphaerica	exon
TCONS_00048127-exon-scaffold_140-1510915933:187150..187240	TCONS_00048127-exon-scaffold_140-1510915933:187150..187240	Clytia hemisphaerica	exon
TCONS_00048127-exon-scaffold_140-1510915933:184345..185325	TCONS_00048127-exon-scaffold_140-1510915933:184345..185325	Clytia hemisphaerica	exon
TCONS_00048127-exon-scaffold_140-1491911889:187607..187717	TCONS_00048127-exon-scaffold_140-1491911889:187607..187717	Clytia hemisphaerica	exon
TCONS_00048127-exon-scaffold_140-1491911889:187150..187240	TCONS_00048127-exon-scaffold_140-1491911889:187150..187240	Clytia hemisphaerica	exon
TCONS_00048127-exon-scaffold_140-1491911889:184345..185325	TCONS_00048127-exon-scaffold_140-1491911889:184345..185325	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_140	supercontig	scaffold_140:184345..187717 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.446173	0.467169	0.402991	0.838399	0	0	0	0	0.295248	0	0	0	0.18141	0	0	0	0	0	0	0	0	0	1.01961	0.4255	0	0	0.161653	0	0.270342	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00048127 vs. Swiss-Prot (Human)

BLAST of TCONS_00048127 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00048127 (transcript) - C. hemisphaerica