TCONS_00048126 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048126
Unique NameTCONS_00048126
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1240

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048126 ID=TCONS_00048126|Name=TCONS_00048126|organism=Clytia hemisphaerica|type=transcript|length=1240bp
GTCGGATTGTCGGAAtcgtttgttttggttgtgattttttatgaattctt
GTTCAAGTTTTCTtgaaatgtcaatttcaggttTATTGTGGATATGTTaa
tCATTCATCCTTGACGAACGGAGAATCATTGTATTGGCGCCATAGAGAGC
TTTGAAGATTGCTGCTTCAACAACAGATTACGATATACTgaaatctgTTC
ATCAAACCACGGCGATATTCAAATACTCTGGAAgcattttaaacgttttt
tcttGTTAGACTTCCAAGCGAAACGTATGGTACAACCTGTGGAATCTCTT
CTGTGGTCTTTTGGGAAAATGGTGCGGATTAGCATTGCATAGCAGAAAGA
ATGTAGAGCTCAGTTAACCATAGTTGATTTTGATGCAGATGATCGTCACT
GAAGATTGATGCAGGATACATCAACGACGCCACAATGCTTGTGCTTATTT
TATACTTGTAAGGAAATAAATAAAGTCtccgtcataaattttgaatcCCC
CTCAGATCCGCCACTATGTATTGCGCTTACTTCTATAGCTTTTTTAGACC
ACTTGCAAagaatttttcatttgaaaaaccTCCTTAAAGCAGAAAGTGCA
CGTTCAAGACGAGCTTTTTCTTATTAAAAGTACATAACTCGAAGCTTCCC
TGTCTCAAAGCCccattcagttttcaattggAATAATTTTATGGATTAAT
ATCTCAAAGTGGTTGAAATTTAGGGATTTTtaaaagcggacaaattttaa
gtcaaattttTAGGTTTGTGACACAGGTGTGTATTGCCGTGGTCATAGTA
AGCCATGGTTGATATTTTTAAAGCAGATTGTATCTATCAAAAGCGTCTGT
TGGGTGTTTGTTTTATAAATTCTTCTCCCAATAAGTTTTGATTAGAAATG
GCATCTAAAGTTTTAAAACTTGAAGAAATGAAATTCTAGTTTTTGGCCTG
TTTTATTCAATTCGAACTGTTTTACAAGAATAATTTTGATGCACAAAACA
TCTTTTGGGATACTTTTATTCACCAGGTGTTAATTTATATATCATCATTA
CAAGCTCAATATTGACAAAGCTAAGACTTTAGACCAGCGGCCAAGGTAGT
GCtctgtgtcacttcgtagggcaccccttagatcaaggcaaatttttgat
attatgcccCTAATAGGAAGTcaaatctcctgcagttttcaagtgaatcg
atttttatttcaagggtccttctttactaacggttttttc
Run BLAST on NCBI

transcript from alignment at scaffold_140:184345..187704-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048126 ID=TCONS_00048126|Name=TCONS_00048126|organism=Clytia hemisphaerica|type=transcript|length=3360bp|location=Sequence derived from alignment at scaffold_140:184345..187704- (Clytia hemisphaerica)
GTCGGATTGTCGGAATCGTTTGTTTTGGTTGTGATTTTTTATGAATTCTT
GTTCAAGTTTTCTTGAAATGTCAATTTCAGGTTTATTGTGGATATGTTGT
AAGGCCTTTGGATGTTTTTAATTTAAAATTTTCAACCTTGAAAGTATTCT
CGGTATGTTTTTACTTTCAACAATATGGGAGTATTTTTGTACATGTTCCC
AAGATATATTTGGATTCGGCAAGGCGTTGAAATGTTCNCAACCCCGAAAG
TATTCTCGATATGTTTTTACTTTCACCAATATGGGAGTATTTTTGTACAT
GCTCCCAAGATATATTTTAGATTCTGCAAGGCCTTGAAATGTTCTTACTA
CTCTGTATGTCCTGTATCATGCTTGAAATTTGAAAACTTTTTCGAAATAA
ATCCTTACACAATTTTTTTTTGATTTTATATCTTTTCTTATAGCTCTTTA
TTTTTATTTTCCAGAATCATTCATCCTTGACGAACGGAGAATCATTGTAT
TGGCGCCATAGAGAGCTTTGAAGATTGCTGCTTCAACAACAGATTACGAT
ATACTGTAAGTTTATATACCCCTGGATTTATCCGTTTCTGATGGACGTTT
GGTTAAAGAGATTCCTGCATAAAAAATGAAACTTAANATAGAGAGCTTTG
AAGATTGCTGCTTCAACAACAGATTACGATATACTGTAAGTTTATATACC
CCTGGATCTATCTGTTTTTTCGGGACCAATTAATGATATTCTGATGGACG
TTTGGTTAAAGAGATTCCTGCATAAAAAATCCATGAATAGCTATAATGAA
AATCGTTTAAAAAATTAAAGTCAAAGTTGTCAACAATGATTCTATCCTAA
GATATTGACATCAGAAGTTCCAAATTCAAGACATCTGCACTCTGTGGAAG
CCATATTGAAATAATAATTTTAATTTCAAACTCTATGGTATCCTTTATCC
ATACTAGGTAAAGATTAGAGAATTGGATAAAAAATTAAATGACTTTTTAT
GGTATACAAAACCTCTAAATGTGGTCAATCATACAAAAATCATTTAGTTC
AACTTCGGGTATCCTTCTAGTCTGCTCTCAATTATTTTAGTATGATGACT
AGCTGGTATGAACAGAAGTTTTCCAAATTCAAATTTTTTCATTTTTGTAT
GGCTTCCACAAAGTGCAGATGTCTTGAATTTGGAACTTTAGATGTCAATA
ACTTGGGATAGAATCGCTGTTGACAACTTTAACTTGAATTTTCCAAATGC
TTTTCATAATAGCTATGCCCTGACAAATTTTGATTTTCTGTGCTGGAATC
CCTTTAAATACCTTTCAGCCCTACTTGGAAATTAACTTTTGTTTCATCCC
TTCGAAATTCAACGTTTAAAAATTGCATTTCGAAATCATTGCCACTGAAT
TTGCTAACCTTGAAACAAAGGAATTTCTATCCCCATTGGGATTTTAATAG
GAGTAGGAATTATCTCCACTGAGAAGAAAAGTTCCACCGGGGCTGTGAAA
CAGGGGTGTCTATGGTCGTGTTCACACTACAGACCTTCCTTAATAAAAAT
GTAGCTAGGAGAATCTTTTGTTGACTATAATACAGAACGTGCATTTAACA
AAGAGTCGAACGCGTAGTATTGTAATTTTTAATCGATCTTCCTTAATTAA
GAGTCGTAAGCTCTATTGTCTTAAGGGTAGTGTAGAGGCTTCCCTTAAAA
CAAAAGATTTTATTAAGGAAGCATAAACAAAGAATGCGTGCAGTTAACAA
AAAGTTTTACGATTTCAAAAACGAATGAACTGAGGAAAAAATTAGAAATA
GTGTAAACGGTGTTGTTGATGTGTAAGATGAATGCAGTTATTGAGTAAAA
CCATTAGAACAAATATGTTTGCGGATTTCAATTGATGTATGGATACCAAT
ATCAACCAATCACAGGTGAAATCGAAACTCTCAATAAAAAATCAACCAAT
GAGAAGCCTTAAGCAAAATCAATTACCGTGTTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCTATGTCATTGTTTTAAGTTTTAAAGATTGTTCA
GCTTTGATTGTCTATGTTAATTATTTTAAAAACCGATTTATTCTCTCGTT
TTTTTTCAGGAAATCTGTTCATCAAACCACGGCGATATTCAAATACTCTG
GAAGCATTTTAAACGTTTTTTCTTGTTAGACTTCCAAGCGAAACGTATGG
TACAACCTGTGGAATCTCTTCTGTGGTCTTTTGGGAAAATGGTGCGGATT
AGCATTGCATAGCAGAAAGAATGTAGAGCTCAGTTAACCATAGTTGATTT
TGATGCAGATGATCGTCACTGAAGATTGATGCAGGATACATCAACGACGC
CACAATGCTTGTGCTTATTTTATACTTGTAAGGAAATAAATAAAGTCTCC
GTCATAAATTTTGAATCCCCCTCAGATCCGCCACTATGTATTGCGCTTAC
TTCTATAGCTTTTTTAGACCACTTGCAAAGAATTTTTCATTTGAAAAACC
TCCTTAAAGCAGAAAGTGCACGTTCAAGACGAGCTTTTTCTTATTAAAAG
TACATAACTCGAAGCTTCCCTGTCTCAAAGCCCCATTCAGTTTTCAATTG
GAATAATTTTATGGATTAATATCTCAAAGTGGTTGAAATTTAGGGATTTT
TAAAAGCGGACAAATTTTAAGTCAAATTTTTAGGTTTGTGACACAGGTGT
GTATTGCCGTGGTCATAGTAAGCCATGGTTGATATTTTTAAAGCAGATTG
TATCTATCAAAAGCGTCTGTTGGGTGTTTGTTTTATAAATTCTTCTCCCA
ATAAGTTTTGATTAGAAATGGCATCTAAAGTTTTAAAACTTGAAGAAATG
AAATTCTAGTTTTTGGCCTGTTTTATTCAATTCGAACTGTTTTACAAGAA
TAATTTTGATGCACAAAACATCTTTTGGGATACTTTTATTCACCAGGTGT
TAATTTATATATCATCATTACAAGCTCAATATTGACAAAGCTAAGACTTT
AGACCAGCGGCCAAGGTAGTGCTCTGTGTCACTTCGTAGGGCACCCCTTA
GATCAAGGCAAATTTTTGATATTATGCCCCTAATAGGAAGTCAAATCTCC
TGCAGTTTTCAAGTGAATCGATTTTTATTTCAAGGGTCCTTCTTTACTAA
CGGTTTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030633XLOC_030633Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048126-exon-scaffold_140-1575043694:187607..187704TCONS_00048126-exon-scaffold_140-1575043694:187607..187704Clytia hemisphaericaexon
TCONS_00048126-exon-scaffold_140-1575043694:187150..187240TCONS_00048126-exon-scaffold_140-1575043694:187150..187240Clytia hemisphaericaexon
TCONS_00048126-exon-scaffold_140-1575043694:184345..185395TCONS_00048126-exon-scaffold_140-1575043694:184345..185395Clytia hemisphaericaexon
TCONS_00048126-exon-scaffold_140-1510915933:187607..187704TCONS_00048126-exon-scaffold_140-1510915933:187607..187704Clytia hemisphaericaexon
TCONS_00048126-exon-scaffold_140-1510915933:187150..187240TCONS_00048126-exon-scaffold_140-1510915933:187150..187240Clytia hemisphaericaexon
TCONS_00048126-exon-scaffold_140-1510915933:184345..185395TCONS_00048126-exon-scaffold_140-1510915933:184345..185395Clytia hemisphaericaexon
TCONS_00048126-exon-scaffold_140-1491911889:187607..187704TCONS_00048126-exon-scaffold_140-1491911889:187607..187704Clytia hemisphaericaexon
TCONS_00048126-exon-scaffold_140-1491911889:187150..187240TCONS_00048126-exon-scaffold_140-1491911889:187150..187240Clytia hemisphaericaexon
TCONS_00048126-exon-scaffold_140-1491911889:184345..185395TCONS_00048126-exon-scaffold_140-1491911889:184345..185395Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_140supercontigscaffold_140:184345..187704 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.103278	0.466935	0.627533	0.835077	0.126133	0.166369	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2.1297e-08	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048126 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top