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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048122 ID=TCONS_00048122|Name=TCONS_00048122|organism=Clytia hemisphaerica|type=transcript|length=246bp
agaaaattcttttttgtccAGTTTCGCCCTCAAAATTCAGGAAATGTTTG
CTGCAGAATCGGAAGAAGTGAAAGAAAATACTGTCTAAGGCTGTACAGTA
TATTCACGCAACTCTACTATAACAATTTGAGGCCTATTAGAGTCAAAAAC
TACCTCAATGAAATGCGCATGATGACGATGGCTTGAACATAAACAAATCT
TCCAATTCTTTAATTGATCACTCCTTCCTATCCACTTCCTATCAAC Run BLAST on NCBI transcript from alignment at scaffold_140:167692..169403- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048122 ID=TCONS_00048122|Name=TCONS_00048122|organism=Clytia hemisphaerica|type=transcript|length=1712bp|location=Sequence derived from alignment at scaffold_140:167692..169403- (Clytia hemisphaerica)
AGAAAATTCTTTTTTGTCCAGTTTCGCCCTCAAAATTCAGGAAATGTTTG
CTGCAGAATCGGAAGAAGTGAAAGAAAATACTGTCTAAGGGTAAGGAATT
AATTTTACAAAATTAAAAGGAAAAAGGAAACAAATTAATTACAATATTTT
GTTCATACACGTCTTTTTTTTTTTAAGAAACTAGTTTTACCAAGCAGCCT
CAATGTTTCTTAAGAAATCGGCCTTCTTGAGCCTTAAATGTTTCTTACAT
GTTTCTAAACTTTTTGACATAATTAGCCTTGATTGGAAGGTTCTTATAAA
AAAAACGAATTAAAAAATGTTATTTTCTCATTCTCAGCCTCAGCATGTTT
CTTAGATGTTTCTTAGTTTTTAGGCATTCTGAGCCTCATGTTTCTTAAAA
GTGTGTTTCTTAAAAAAAAAAAAGACGTGTACTTCTCTCATGAAATCAAT
CTAGAAGAATTCTGCATAAAAGGAGACCGGGTTAAGATTCATCATATTTG
AATGCTTTCAAAGGTCTGAAACGTTTAAATTGACTCTGTAATCTTTCGTC
TTCGGACCATTGGACACAATTCTCTGTAAGGTCGATAGGTGTATGAGCAA
TTTCATGATCGTAATGAATCTTGCTCATACTTCGTATTGATTTAACAATT
TGAAAGTCTTCAAAAGTGAATTTACTATTACAGAGCAACTAGTTTCCATT
CCCCCTAATTTATTGATTCATTCAATTCTGTTTTGATAATCAATTTCGCT
CTTACCCATATAGAGGTTCAACTGGCGAAAGATAATGTTTCCATTCATCC
AACTCTTCTTGAAACTGTCTAGTCACGTCCTATCATCCATCAGCCACGAT
TGAAAACGAGAAAAATCAACATTGAACTGGTACCGTTACGTTTCCATGGA
TGTCTTATTGATGCATGATGTCTCTAGGTCTTTACTCTGAGTGTCCTGTT
TGACATGACTTATAATGATTTAAATGAATAATCCATCAGATACATCACCC
CGGCTTCGATATTACGGGCTGAACTGATCTGTTTAAAATCATATCATCAA
ATGAACTAAAAGCTGCTCCTAAAAAGATTGGCAGCCTGCACATTTCGATA
AAAAGGTGATATCTCTTTGCAATGACGATTTTGAATGAATGGATTTAAAA
GTTTGGAAAAAGAAGATGAAAGAATATAAAGATACTTTTACTGGAAAGGA
AAAATTATATTCTTCTGAAACTTTAGATTTCTCTGAATTCAAACTGTGTT
TAGATTTTTTACCTTTTTTTGGAACAAAAATTAGAACCCTTCAAGTTGGA
CCCCATTAGTGTAATGTCATAGCTGGAAAATAGCTTAATAATCANTTTCT
CTGAATTCAAACTGTGTTTAGATTTTTTACCAATTTTTGTTCCAAACAAA
AATTAGAACCCTTCAAATTGGACCCCATTAGTGTATTGTCATAGCTGGAA
AATAGCTTAATAATCGATTTGAATTGTCGTCTCAAAAGACGCCTGGATGG
AACGATCAAATTCGAAAGTTATCGTTTTGTCAGTAATATCTCTTCTCTTA
TTTCAGCTGTACAGTATATTCACGCAACTCTACTATAACAATTTGAGGCC
TATTAGAGTCAAAAACTACCTCAATGAAATGCGCATGATGACGATGGCTT
GAACATAAACAAATCTTCCAATTCTTTAATTGATCACTCCTTCCTATCCA
CTTCCTATCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048122-exon-scaffold_140-1575043694:169314..169403 | TCONS_00048122-exon-scaffold_140-1575043694:169314..169403 | Clytia hemisphaerica | exon |
| TCONS_00048122-exon-scaffold_140-1575043694:167692..167847 | TCONS_00048122-exon-scaffold_140-1575043694:167692..167847 | Clytia hemisphaerica | exon |
| TCONS_00048122-exon-scaffold_140-1510915933:169314..169403 | TCONS_00048122-exon-scaffold_140-1510915933:169314..169403 | Clytia hemisphaerica | exon |
| TCONS_00048122-exon-scaffold_140-1510915933:167692..167847 | TCONS_00048122-exon-scaffold_140-1510915933:167692..167847 | Clytia hemisphaerica | exon |
| TCONS_00048122-exon-scaffold_140-1491911889:169314..169403 | TCONS_00048122-exon-scaffold_140-1491911889:169314..169403 | Clytia hemisphaerica | exon |
| TCONS_00048122-exon-scaffold_140-1491911889:167692..167847 | TCONS_00048122-exon-scaffold_140-1491911889:167692..167847 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_140 | supercontig | scaffold_140:167692..169403 - |
Blast
The following BLAST results are available for this feature:
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