TCONS_00048089 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048089
Unique NameTCONS_00048089
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length140

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048089 ID=TCONS_00048089|Name=TCONS_00048089|organism=Clytia hemisphaerica|type=transcript|length=140bp
CAAGGAGGAGAGCTCACTCGGCCCAATCTCCCAGCAAGGAACTCAAAGGA
GAAGTGCACTGGGGGTCAGTAGAGATCTAGACTAGTCACATGTTCAAACA
ATGATCTCTACTGTCAGGGCAAGATGGTAGACCCAGCTAT
Run BLAST on NCBI

transcript from alignment at scaffold_14:541688..541827

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048089 ID=TCONS_00048089|Name=TCONS_00048089|organism=Clytia hemisphaerica|type=transcript|length=140bp|location=Sequence derived from alignment at scaffold_14:541688..541827 (Clytia hemisphaerica)
ATAGCTGGGTCTACCATCTTGCCCTGACAGTAGAGATCATTGTTTGAACA
TGTGACTAGTCTAGATCTCTACTGACCCCCAGTGCACTTCTCCTTTGAGT
TCCTTGCTGGGAGATTGGGCCGAGTGAGCTCTCCTCCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030612XLOC_030612Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048089-exon-scaffold_14-1491911889:541688..541827TCONS_00048089-exon-scaffold_14-1491911889:541688..541827Clytia hemisphaericaexon
TCONS_00048089-exon-scaffold_14-1510915933:541688..541827TCONS_00048089-exon-scaffold_14-1510915933:541688..541827Clytia hemisphaericaexon
TCONS_00048089-exon-scaffold_14-1575043694:541688..541827TCONS_00048089-exon-scaffold_14-1575043694:541688..541827Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:541688..541827 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048089 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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