TCONS_00048083 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048083
Unique NameTCONS_00048083
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length558

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048083 ID=TCONS_00048083|Name=TCONS_00048083|organism=Clytia hemisphaerica|type=transcript|length=558bp
CGAACAAAGGTATATGAGCAGGGTCATTGAGGAAAATAAGGTTAAGGCTC
GCCATTTTCATTCGACTAAAAGATTCATTGATGATTTGTGTGCTATCAAT
GACGGTGACTTGTTTCAGTCTGTGTATAGAGATATCTATCCAGATGAGCT
TGAACTCAAAATTGAGCACTCTGGTAAtcatgcttcttttttaaacctgg
aTATTACCATCAAAGACgggatatttatttataagttgTTTGATAAACGG
GATGCATTTCCTTTTTCCACAGTCcgaatgccacataaagatagcaACTT
GCCAGAATGGattttttgttcttcttttgTTGGTGAACTTCTCAGGATTG
CTTGTTCTACGTTACTTTTGGAGGACTTGAAAGTTAAAGCCAAAGTTTTT
ATACAAAGAATGCGATTTCAAGGTGCTGAAAACGCAAAGTTAGATTGCAG
TCTTCGACGGGTTATAgttcgtcatttttcagaattttcaagatttcaac
tctctcaagattcactcgttcgccagctcttgcggtgagcggtcacggTG
TACGGGGC
Run BLAST on NCBI

protein sequence of TCONS_00048083-protein

>TCONS_00048083-protein ID=TCONS_00048083-protein|Name=TCONS_00048083-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
EQRYMSRVIEENKVKARHFHSTKRFIDDLCAINDGDLFQSVYRDIYPDEL
ELKIEHSGNHASFLNLDITIKDGIFIYKLFDKRDAFPFSTVRMPHKDSNL
PEWIFCSSFVGELLRIACSTLLLEDLKVKAKVFIQRMRFQGAENAKLDCS
LRRVIVRHFSEFSRFQLSQDSLVRQLLR
Run BLAST on NCBI

transcript from alignment at scaffold_14:386616..387173

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048083 ID=TCONS_00048083|Name=TCONS_00048083|organism=Clytia hemisphaerica|type=transcript|length=558bp|location=Sequence derived from alignment at scaffold_14:386616..387173 (Clytia hemisphaerica)
GCCCCGTACAccgtgaccgctcaccgcaagagctggcgaacgagtgaatc
ttgagagagttgaaatcttgaaaattctgaaaaatgacgaacTATAACCC
GTCGAAGACTGCAATCTAACTTTGCGTTTTCAGCACCTTGAAATCGCATT
CTTTGTATAAAAACTTTGGCTTTAACTTTCAAGTCCTCCAAAAGTAACGT
AGAACAAGCAATCCTGAGAAGTTCACCAAcaaaagaagaacaaaaaatCC
ATTCTGGCAAGTtgctatctttatgtggcattcgGACTGTGGAAAAAGGA
AATGCATCCCGTTTATCAAAcaacttataaataaatatcccGTCTTTGAT
GGTAATAtccaggtttaaaaaagaagcatgaTTACCAGAGTGCTCAATTT
TGAGTTCAAGCTCATCTGGATAGATATCTCTATACACAGACTGAAACAAG
TCACCGTCATTGATAGCACACAAATCATCAATGAATCTTTTAGTCGAATG
AAAATGGCGAGCCTTAACCTTATTTTCCTCAATGACCCTGCTCATATACC
TTTGTTCG

Coding sequence (CDS) from alignment at scaffold_14:386616..387173

>TCONS_00048083 ID=TCONS_00048083|Name=TCONS_00048083|organism=Clytia hemisphaerica|type=CDS|length=537bp|location=Sequence derived from alignment at scaffold_14:386616..387173 (Clytia hemisphaerica)
tcaccgcaagagctggcgaacgagtgaatcttgagagagttgaaatcttg
aaaattctgaaaaatgacgaacTATAACCCGTCGAAGACTGCAATCTAAC
TTTGCGTTTTCAGCACCTTGAAATCGCATTCTTTGTATAAAAACTTTGGC
TTTAACTTTCAAGTCCTCCAAAAGTAACGTAGAACAAGCAATCCTGAGAA
GTTCACCAAcaaaagaagaacaaaaaatCCATTCTGGCAAGTtgctatct
ttatgtggcattcgGACTGTGGAAAAAGGAAATGCATCCCGTTTATCAAA
caacttataaataaatatcccGTCTTTGATGGTAATAtccaggtttaaaa
aagaagcatgaTTACCAGAGTGCTCAATTTTGAGTTCAAGCTCATCTGGA
TAGATATCTCTATACACAGACTGAAACAAGTCACCGTCATTGATAGCACA
CAAATCATCAATGAATCTTTTAGTCGAATGAAAATGGCGAGCCTTAACCT
TATTTTCCTCAATGACCCTGCTCATATACCTTTGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030606XLOC_030606Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048083-proteinTCONS_00048083-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048083-exon-scaffold_14-1491911889:386616..387173TCONS_00048083-exon-scaffold_14-1491911889:386616..387173Clytia hemisphaericaexon
TCONS_00048083-exon-scaffold_14-1510915933:386616..387173TCONS_00048083-exon-scaffold_14-1510915933:386616..387173Clytia hemisphaericaexon
TCONS_00048083-exon-scaffold_14-1575043694:386616..387173TCONS_00048083-exon-scaffold_14-1575043694:386616..387173Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:386616..387173 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.53249	1.40734	2.2063	2.48056	1.76278	1.66832	1.7633	1.87664	2.90613	2.12684	1.29462	2.20975	2.40601	3.33912	1.41001	2.04329	1.4357	2.11712	1.78921	1.17818	2.04027	2.2319	1.45295	1.23598	1.1817	2.61928	1.94257	2.17424	2.65138	2.37239
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048083 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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