TCONS_00048075 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048075
Unique NameTCONS_00048075
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length256

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048075 ID=TCONS_00048075|Name=TCONS_00048075|organism=Clytia hemisphaerica|type=transcript|length=256bp
CAATTGGAATTGGAGAAGTGATGAGACGTATCTTCGGCAAAGTTCTGATC
AACACCATCAAGCCAGATATCCTTAAAGCAACTGGTAGTGTTCAAGTGTG
CGCTGGACAGCAGGCTGGCTGTGAAGCGGCAGTTCACGCAATCAACCAAC
TATTCCAAGAAGATGAGACAAACGGAGTGATACTAGTGGATGCAGCGAAT
GCTTTCAACAGCATTAACAGAAGATCACTGCTCCACCACATCAAAATATT
GTGTCC
Run BLAST on NCBI

transcript from alignment at scaffold_14:225553..225808

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048075 ID=TCONS_00048075|Name=TCONS_00048075|organism=Clytia hemisphaerica|type=transcript|length=256bp|location=Sequence derived from alignment at scaffold_14:225553..225808 (Clytia hemisphaerica)
GGACACAATATTTTGATGTGGTGGAGCAGTGATCTTCTGTTAATGCTGTT
GAAAGCATTCGCTGCATCCACTAGTATCACTCCGTTTGTCTCATCTTCTT
GGAATAGTTGGTTGATTGCGTGAACTGCCGCTTCACAGCCAGCCTGCTGT
CCAGCGCACACTTGAACACTACCAGTTGCTTTAAGGATATCTGGCTTGAT
GGTGTTGATCAGAACTTTGCCGAAGATACGTCTCATCACTTCTCCAATTC
CAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030598XLOC_030598Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048075-exon-scaffold_14-1491911889:225553..225808TCONS_00048075-exon-scaffold_14-1491911889:225553..225808Clytia hemisphaericaexon
TCONS_00048075-exon-scaffold_14-1510915933:225553..225808TCONS_00048075-exon-scaffold_14-1510915933:225553..225808Clytia hemisphaericaexon
TCONS_00048075-exon-scaffold_14-1575043694:225553..225808TCONS_00048075-exon-scaffold_14-1575043694:225553..225808Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:225553..225808 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.69794	1.3612	0	0	0	1.48751	0	0	0	1.45701	3.53553	0	0.928355	0	0.792626	1.27591	3.14364	1.07404	0	1.55274	0	0	0	0	0.749347	0	1.91403	0	0.774658	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048075 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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