TCONS_00048057 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048057
Unique NameTCONS_00048057
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length531

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048057 ID=TCONS_00048057|Name=TCONS_00048057|organism=Clytia hemisphaerica|type=transcript|length=531bp
TGACAAAGGCTCTTTGTTATGAGTGTACACTGGCTCCCACTATCGAGGAG
GGCGTAAGTATTGACTGAATGACCAGCTTGGTTTGTAACTGTTACTTGGA
CGACTTTCAGGAAGACGATGTGATCGTTTCTGGTCATGTTGATGCTTGGT
AACTTTGGCCCGTCCTTTCTATCTTTGTCTTTAGAAAATTCGGGTTTGGC
TTCGGACTCTAAATTTACTATTGCCTGGTGGATTGTAGTATGGTGATGCT
TCTTACATCCCTTTGCAAAACAAGTCTTTTTTGAGCTGCAGGTACTGACA
CCGTGTCCTTGACCAAGACAGTTGAAACATAGACGCTTTGACTTGACAAA
GTTGAGTTTTTCGTCATCTGGTTTTGCTTTGAAGCCTTCACACTTGAATA
GGTAGTGATCACCGTTGCAGCATGGGCAGTGCCTTGTATTGTCTGTTGGA
CCAAACTTGTGAACACGTGGACCAtttcgattacttcgatcagTTGGCAG
GTTTGGGTCCTTTGAAGCCATAACTCTTGCT
Run BLAST on NCBI

protein sequence of TCONS_00048057-protein

>TCONS_00048057-protein ID=TCONS_00048057-protein|Name=TCONS_00048057-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
ARVMASKDPNLPTDRSNRNGPRVHKFGPTDNTRHCPCCNGDHYLFKCEGF
KAKPDDEKLNFVKSKRLCFNCLGQGHGVSTCSSKKTCFAKGCKKHHHTTI
HQAIVNLESEAKPEFSKDKDRKDGPKLPSINMTRNDHIVFLKVVQVTVTN
QAGHSVNTYALLDSGSQCTLITKSLC
Run BLAST on NCBI

transcript from alignment at scaffold_14:41046..41576

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048057 ID=TCONS_00048057|Name=TCONS_00048057|organism=Clytia hemisphaerica|type=transcript|length=531bp|location=Sequence derived from alignment at scaffold_14:41046..41576 (Clytia hemisphaerica)
AGCAAGAGTTATGGCTTCAAAGGACCCAAACCTGCCAActgatcgaagta
atcgaaaTGGTCCACGTGTTCACAAGTTTGGTCCAACAGACAATACAAGG
CACTGCCCATGCTGCAACGGTGATCACTACCTATTCAAGTGTGAAGGCTT
CAAAGCAAAACCAGATGACGAAAAACTCAACTTTGTCAAGTCAAAGCGTC
TATGTTTCAACTGTCTTGGTCAAGGACACGGTGTCAGTACCTGCAGCTCA
AAAAAGACTTGTTTTGCAAAGGGATGTAAGAAGCATCACCATACTACAAT
CCACCAGGCAATAGTAAATTTAGAGTCCGAAGCCAAACCCGAATTTTCTA
AAGACAAAGATAGAAAGGACGGGCCAAAGTTACCAAGCATCAACATGACC
AGAAACGATCACATCGTCTTCCTGAAAGTCGTCCAAGTAACAGTTACAAA
CCAAGCTGGTCATTCAGTCAATACTTACGCCCTCCTCGATAGTGGGAGCC
AGTGTACACTCATAACAAAGAGCCTTTGTCA

Coding sequence (CDS) from alignment at scaffold_14:41046..41576

>TCONS_00048057 ID=TCONS_00048057|Name=TCONS_00048057|organism=Clytia hemisphaerica|type=CDS|length=528bp|location=Sequence derived from alignment at scaffold_14:41046..41576 (Clytia hemisphaerica)
GCAAGAGTTATGGCTTCAAAGGACCCAAACCTGCCAActgatcgaagtaa
tcgaaaTGGTCCACGTGTTCACAAGTTTGGTCCAACAGACAATACAAGGC
ACTGCCCATGCTGCAACGGTGATCACTACCTATTCAAGTGTGAAGGCTTC
AAAGCAAAACCAGATGACGAAAAACTCAACTTTGTCAAGTCAAAGCGTCT
ATGTTTCAACTGTCTTGGTCAAGGACACGGTGTCAGTACCTGCAGCTCAA
AAAAGACTTGTTTTGCAAAGGGATGTAAGAAGCATCACCATACTACAATC
CACCAGGCAATAGTAAATTTAGAGTCCGAAGCCAAACCCGAATTTTCTAA
AGACAAAGATAGAAAGGACGGGCCAAAGTTACCAAGCATCAACATGACCA
GAAACGATCACATCGTCTTCCTGAAAGTCGTCCAAGTAACAGTTACAAAC
CAAGCTGGTCATTCAGTCAATACTTACGCCCTCCTCGATAGTGGGAGCCA
GTGTACACTCATAACAAAGAGCCTTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030580XLOC_030580Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048057-proteinTCONS_00048057-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048057-exon-scaffold_14-1491911889:41046..41576TCONS_00048057-exon-scaffold_14-1491911889:41046..41576Clytia hemisphaericaexon
TCONS_00048057-exon-scaffold_14-1510915933:41046..41576TCONS_00048057-exon-scaffold_14-1510915933:41046..41576Clytia hemisphaericaexon
TCONS_00048057-exon-scaffold_14-1575043694:41046..41576TCONS_00048057-exon-scaffold_14-1575043694:41046..41576Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:41046..41576 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.21197	0.859538	2.74451	1.70869	0.297166	0.234825	0.141653	0.397841	0.278538	0.805033	0.558132	0.513652	0.586214	0.0760987	0.125127	0.537121	0.0827112	0.254329	0	0	0	0.155881	0.252659	0.114852	0.236589	0	0.453233	0.322468	0.12229	0.124595
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048057 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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