TCONS_00048051 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048051
Unique NameTCONS_00048051
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1165

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048051 ID=TCONS_00048051|Name=TCONS_00048051|organism=Clytia hemisphaerica|type=transcript|length=1165bp
CGAAAATGCAACTTTGCTGCTGGCGTGCCACTACCATTACGCTACTACGG
CTACCATTTTTTTAGCTTCTAGAACGCTAAGCGGAGAGAGGCTAAAATAG
GATACTTGGTCAGTCGCACGCAAATACAATTGATGAAAGTGAATTATAGA
CGTGTCTAAGTGAGAGTGACCAAGTTACACCATATTCCCGCGTGACTGCA
CGGAGTTCCTTCCTTTTGTAATTGAGCAGCTCTTGTCTTGTCGTCAATGT
TCTCTTCGATTTAATTGTCAACTTTTAATTGTCTTTTGTCattattgtta
tattattgAATACAACATGCCATCATCAACGGAATTTCCATCTGCCTGtg
GCAAAAAGTCCAGTACTCCAAATGCAGGAAAACAACGCTTTAAGCGCCAA
CTTAATTCATCAGCAACATCAACGTCCTCAGCATCTGCTTGCTTGGAGGC
TAAAAAGTCCAGGTCTGCAACGTCTGCGTCTGCTTGCTTGGAGGCTAAGA
AATCCAGATCACGTGAAGATCCAATGCATATGTTAAGCAATTCATTTAAT
GGATTTAGTGGTGACGAAGACTCGGACATTGGAAACCAATCATTGGACAA
GACCCCACGTATCCATGAAAACACTCAACTACGCAACCGAGGACTAAACA
CCCCAAGCAACAATTGCATTGTTTCATCAGATGTTGTCACACCTACGGGC
AGCAATGTCAATGAAGGTGAACTTTACAGGAagaagaaaacatttaaaaa
tgcaataaagaatttgaagaaaaaacaaagaaaacagtTATGGAAGGCCC
ACCAAACCTATGATGAAAATCTAACTAAAGAACAGGAAAAAGTTCAATGC
CTGGAAGATGTTGTAGaatcaacaaagaaaaattataatGAAAAGTTAAA
TGAAGAAAAGGAGAAGGTTCAATGTCTGGAGGATGTTGTAGAATcgacaa
agaaaaattttcaacttcttGCAAAGCACAGTTTAAGATATAACAATATA
ACATCTACTAAAGAATATAAAACATGCATTGCCACTGGTTTATGCCAAAC
AACAAAACCTAAAGTAGCCAAACATAATAGAAGCAAAAAGACTTCAGATT
TACTATCAGAGATACCCATCTTTCACGAAGAAGATgttattgaaattgaa
aatggtaCAATAGGC
Run BLAST on NCBI

transcript from alignment at scaffold_14:802110..805364-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048051 ID=TCONS_00048051|Name=TCONS_00048051|organism=Clytia hemisphaerica|type=transcript|length=3255bp|location=Sequence derived from alignment at scaffold_14:802110..805364- (Clytia hemisphaerica)
CGAAAATGCAACTTTGCTGCTGGCGTGCCACTACCATTACGCTACTACGG
CTACCATTTTTTTAGCTTCTAGAACGCTAAGCGGAGAGAGGCTAAAATAG
GATACTTGGTCAGTCGCACGCAAATACAATTGATGAAAGTGAATTATAGA
CGTGTCTAAGTGAGAGTGACCAAGTTACACCATATTCCCGCGTGACTGCA
CGGAGTTCCTTCCTTTTGTAATTGAGCAGCTCTTGTCTTGTCGTCAATGT
TCTCTTCGATTTAATTGTCAACTTTTAATTGTCTTTTGTCATTATTGTTA
TATTATTGAATACAACATGCCATCATCAACGGAATTTCCATCTGCCTGGT
AAGCATTATATTATATTTTGATTTCGAAAGTGATTTCTACGAACTGACTG
ATTGCTGTAGAGTATAGACATTAAACAGTTAAAGCCTGGCTAACATTAAA
GTAGAATAAAATAGCGAATGAAACACAACATAAACATTGCCTGGGTCTAC
ACTCATTTGTGTATGTGCTCCCTATTCTAGGCTGCCTTGAGACCTGGCAT
GTAACCTTGTGTTTCCTGAGCATAGATAGACCAAATCAGTTATGTTGTCT
ATTGTTTTGATATGATGATGGCAATTAGAATATCTGGGTCTACACTTCTT
TGTGTATGTGCTGCTTTTTTCAAGTGAGCCTTAAGACCTGATATCTATTT
TGACATTACATATGGTGACAAAAGAAGTTTACTTCCCTAAACAGCTAAAT
CTTGGTAATCTCTCAGAACTTCTCGTCCAGTTCACAATTCTTATTCAATA
GATAGAAATTTGATTAAAGACATATTTTTTGCATGTAGGGTAAATAGTCC
ACCTATGAGAGAGGAAGAATAAAATTATTAGGTGGTCCATAGCGTAAGGT
CTCTTGGGTCACGATGCTTTCTATAGACTTTATTTATTTTTAGTGGCAAA
AAGTCCAGTACTCCAAATGCAGGAAAACAACGCTTTAAGCGCCAACTTAA
TTCATCAGCAACATCAACGTCCTCAGCATCTGCTTGCTTGGAGGCTAAAA
AGTCCAGGTCTGCAACGTCTGCGTCTGCTTGCTTGGAGGCTAAGAAATCC
AGGTAAGAAAATTCCTTTATTAATATGTGATAAACTTTTGTGGGGATATT
ATCTTGTGGGCTTAAAATTTAGTTCCCCATTTGAAGAAGCCTTACCATGG
CAAAATAGTTTTTAATAAAATGCCCAAATTATGTGAAATAACAAAGCCCT
TCACAAAATTAAGTCCCTGAAAAATCTTGTGGATGAACTTTCAGCTTTTC
AGTTCTAAAGAAGGAAAGGGATTTGAAAGCTAACCCATGAAATTGCTCTA
CTGCGCGTACTCTTAATAATCGGATTTTAGTCTATTTTTCCTCTATTTTC
AGTTTTTTAACCCTTAGCAATTAGGTTTTCCAATGTTTATTGGAATTTGA
AATCTTTTTAATCCTGCATTTATTTATACCAGGAACCTGAAGTAGAATTA
GTATATGTAATCACATGATAACGAGTGCAATTCGAGAATAATTGCATGAG
TGATTTTTTTGTAATTAATTTTCCGAGTCCGAAAGGACGAGGAAAATTCG
AAACAAAAAAATCACGAGTGCAATTTTCGAATTGTACGAGTTATCATGTG
ATTACGAGCTAATCGCACAATCGGTTTCACTGCTTTTTCCCTGTCAAGAA
AATAAATTACACTGAAAGTTTTATATTTTTGATATTTTTCTCTTCTCTTT
ATGTTTTTCTCTTTATTGTTGTTTATAGATTTTCTTTCTCACAAAATTAA
TTTCGAATGCAATTAGAACGTTCGATAAAAAAATGTAAGAAAAAACATTA
AAATCAATTTTGTAAACATTGGTCCGTCACTGAAGAGTGTGATTAACGAT
TAATTGCTCTCTACAGGATGCAATTAACGATTAATTGCTCTCTTTGAAGG
GGCGCCAAATGAGAAAAAATAACTAATCGTGCGATTACTGTTAAAAACTG
TTACTTATGTCTTTTAGANAAATAACTAATCGTGCGATTAGGTGTCTTAT
TTTATGAATAATAAATTTTTTCTAGATCACGTGAAGATCCAATGCATATG
TTAAGCAATTCATTTAATGGATTTAGTGGTGACGAAGACTCGGACATTGG
AAACCAATCATTGGACAAGACCCCACGGTAATTTATTATGTTTTCATTTC
CCCTTATTAAACAGTAGCATCAAAGCAGTTATGGTGTAAAATTGCTTGTA
TAATTCAGTTGGACTGTCAATTCTCCTTCATCAGTTCAGTGATGCAAGTT
TTAAACCTTTATGACTGTTTACTGCGGTATGAGCCAGTGAAATTTCAAGC
AGCAAAACAAAGTTCCCATTGCAATATTATGTTGAGTATTATGAGTATTT
TTAAAATTCCATATTTGTTTAGTATGTTATAAGATATTATTTTAAATTTG
CAGTATCCATGAAAACACTCAACTACGCAACCGAGGACTAAACACCCCAA
GCAACAATTGCATTGTTTCATCAGATGTTGTCACACCTACGGGCAGCAAT
GTCAATGAAGGTGAACTTTACAGGTAGGTTTTAATTTTATCTAATATTTA
ATTGAAATCTTCTTTTGAACTATTCAGATTTTTTGACCTAGAATTAAAAG
GTTTGCTTCTAAAACAAACAAAAATGAAAAAAATGGTTTTTAATTTTCAC
CGATGTCCCTTTAAATGTAAGTTGACATGAAGAACAAATAACATTTAGAT
TACCTGGGCAGTGGTTGGTCTGATATATTTTTATTGGAAAAAAAGAATGT
CCATTTTTTCTAAACTCAGGAAGAAGAAAACATTTAAAAATGCAATAAAG
AATTTGAAGAAAAAACAAAGAAAACAGTTATGGAAGGCCCACCAAACCTA
TGATGAAAATCTAACTAAAGAACAGGAAAAAGTTCAATGCCTGGAAGATG
TTGTAGAATCAACAAAGAAAAATTATAATGAAAAGTTAAATGAAGAAAAG
GAGAAGGTTCAATGTCTGGAGGATGTTGTAGAATCGACAAAGAAAAATTT
TCAACTTCTTGCAAAGCACAGTTTAAGATATAACAATATAACATCTACTA
AAGAATATAAAACATGCATTGCCACTGGTTTATGCCAAACAACAAAACCT
AAAGTAGCCAAACATAATAGAAGCAAAAAGACTTCAGATTTACTATCAGA
GATACCCATCTTTCACGAAGAAGATGTTATTGAAATTGAAAATGGTACAA
TAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030575XLOC_030575Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048051-exon-scaffold_14-1575043694:805017..805364TCONS_00048051-exon-scaffold_14-1575043694:805017..805364Clytia hemisphaericaexon
TCONS_00048051-exon-scaffold_14-1575043694:804263..804421TCONS_00048051-exon-scaffold_14-1575043694:804263..804421Clytia hemisphaericaexon
TCONS_00048051-exon-scaffold_14-1575043694:803188..803289TCONS_00048051-exon-scaffold_14-1575043694:803188..803289Clytia hemisphaericaexon
TCONS_00048051-exon-scaffold_14-1575043694:802792..802911TCONS_00048051-exon-scaffold_14-1575043694:802792..802911Clytia hemisphaericaexon
TCONS_00048051-exon-scaffold_14-1575043694:802110..802545TCONS_00048051-exon-scaffold_14-1575043694:802110..802545Clytia hemisphaericaexon
TCONS_00048051-exon-scaffold_14-1510915933:805017..805364TCONS_00048051-exon-scaffold_14-1510915933:805017..805364Clytia hemisphaericaexon
TCONS_00048051-exon-scaffold_14-1510915933:804263..804421TCONS_00048051-exon-scaffold_14-1510915933:804263..804421Clytia hemisphaericaexon
TCONS_00048051-exon-scaffold_14-1510915933:803188..803289TCONS_00048051-exon-scaffold_14-1510915933:803188..803289Clytia hemisphaericaexon
TCONS_00048051-exon-scaffold_14-1510915933:802792..802911TCONS_00048051-exon-scaffold_14-1510915933:802792..802911Clytia hemisphaericaexon
TCONS_00048051-exon-scaffold_14-1510915933:802110..802545TCONS_00048051-exon-scaffold_14-1510915933:802110..802545Clytia hemisphaericaexon
TCONS_00048051-exon-scaffold_14-1491911889:805017..805364TCONS_00048051-exon-scaffold_14-1491911889:805017..805364Clytia hemisphaericaexon
TCONS_00048051-exon-scaffold_14-1491911889:804263..804421TCONS_00048051-exon-scaffold_14-1491911889:804263..804421Clytia hemisphaericaexon
TCONS_00048051-exon-scaffold_14-1491911889:803188..803289TCONS_00048051-exon-scaffold_14-1491911889:803188..803289Clytia hemisphaericaexon
TCONS_00048051-exon-scaffold_14-1491911889:802792..802911TCONS_00048051-exon-scaffold_14-1491911889:802792..802911Clytia hemisphaericaexon
TCONS_00048051-exon-scaffold_14-1491911889:802110..802545TCONS_00048051-exon-scaffold_14-1491911889:802110..802545Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:802110..805364 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.238756	0.327663	0.523525	0.534411	6.60037	5.42753	4.45458	4.47787	1.33722	2.75804	2.12367	1.32935	0.866067	0.904017	0.738971	1.37472	1.0504	0.539555	0.88475	1.22118	1.13778	1.06859	0.574982	1.58755	0.533202	1.25909	2.12223	1.05832	1.14572	0.384771
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048051 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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