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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048022 ID=TCONS_00048022|Name=TCONS_00048022|organism=Clytia hemisphaerica|type=transcript|length=1723bp
TCCTgccttaaaataaaaacatctaTTCATTCATTTACAAAATACACGTC
ATGAGTTTTCATGCACATATAATTAAATACTTTTTAATATGGTCTTTTAT
TCCACATCAACTTCAAAGAACAAacagtcatcttttaaaaaccCATCAAT
ATCCAATCTATTTAGTTCAATAAACATTGGGCACCCTGAAGCTATGTTCA
TTTCCTTCTTtggtttttgaaaactttctgaTCCTTTCTTAGGATTAATT
TCTTCGATGTGGTCTTTGCTCCTGTTTTGTTGATTGATCAAagtgaattt
gattttcttttggaaaggcCATTCCAAGATGTTGTCATAGTCTGATTTCA
TAAGAACCAAGAATAGTGATAAGTGTGTTCCTTCTCCTACTCCATCTCCG
TTTAGATAGGCCCTTAAACAAAATTTGTATCCGTATTCACTTGTATAGCA
TGGTGCACTATGTAAAGCACTGATATCTCCAACTAAGGTCTGTTGGCGTC
GCTGTCTAAAGTCGTCTATTTTCCATAGCAATTTCCCATTCATTCGACTA
TTTTCAAGGAGTTGAAGACGCAGATCAACGTCGTTGATGTTTCTATGATT
CTCCTCTGCACATTTATGTAATTTCCTTAAATCTTGTCGTTGTGGTTGAA
CCATTTGCCTTGAAGCTTCCAGCATTTGTTCGAAATCTTTCTTCATATTT
GCCATttcgttttgaaagttttcaaattgGATCATACATCTTTGTTTGAA
CATTTCATAATTTATATCGGCTGATTCCAATGCCATTTGTAGTTCGTCAA
CCCTTGATTTcagttctttgttttcttgttgttCCTCGAGTAATTGTTTG
TGAAGGCATTCCATATTTACTGGTGTTGTTGTTGAGTCGATCATTTTTCT
TCGGTTCAATCGATTTATTTTTTCTGCCAATATTTCCGTCCTAGGTACAC
TAGTACCAATCAGTTTTTAGAATActcaaaaattgagctttttgatactt
tttatgATTCCTTTGTGATAGTATACCAGGTTTTTTGTCTTCTTTGGTTG
AACGAGTGGGTTTGTCTTTGATTTCTGTTGATAAAGAAAGACTAATTATC
ATATATAGACAAAGTCTACGGTGTCCGAACGCAAAACAGTACCCTTTTCA
TTAGACAAGGTGCAAAAACTATCAGATTACCATGACACGCAATTGTAACA
TGATAATATTATTCTAAAGCAGGCTTAAGTATTGAGCAATATGCCTCAAT
AAGAAAAACATTGAATATAACGTAACATAAACAACAAGATCAAATACAAA
AATACGTCAACTCgcttatttcttagaaaaatcaaatttaaagacCAGGA
CAAAACCTCGTCAATTTTACGtcacaaaaatctcaaatgtaCTTTTATGA
GGCTGTAAGGCTTGGAAATCTGTCTTCTGGAACGTGTCAAGCCAAACCCG
AAAATTAGTTTGAATCTCGCTGATTTACTTATGCAGTTGCctaattctct
aattcgatctccaAGGTATGAAGACTATTCTCCGAATTAGAATAAAATTC
GAATTCCAGAGAGCATTCTACACTACTTTCCAGCTGAAAAAGATCAATGC
TTGAATTCGAATTAAATCGAATTTAAGAACGATCCGAATTATAGAGGGTT
GACTGTATTCACAACTGAAAAAACCTTACCTGATTTTTGTGGAAGATTCT
CCCTCTTGTTAACTCCTCCAAAT Run BLAST on NCBI transcript from alignment at scaffold_14:763884..771228+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048022 ID=TCONS_00048022|Name=TCONS_00048022|organism=Clytia hemisphaerica|type=transcript|length=7345bp|location=Sequence derived from alignment at scaffold_14:763884..771228+ (Clytia hemisphaerica)
TCCTgccttaaaataaaaacatctaTTCATTCATTTACAAAATACACGTC
ATGAGTTTTCATGCACATGATTAATTACTTTTCAATACAATATGGTCTTT
TATTCCACATCAACTTCAAAGAGCAAACAGTCATCTTTCAAAAACCCATC
AATATCCAATTTATTTAGCTCAATAAAAATTGGTCAACCTAAACATTTCC
TTCTttgctttttgaaaactttctgaGCCTTTCTTAGGATTAATTTCTTC
GATGTGGTCTTTGCTTCTGTCTTGTTGATTGATTGAAGTGATTGATTAGA
GTGCAGATATTATTTGGGTCAAAGATAACAaattattactttatttttta
aagtaaaaaaacttACNATTATTTGGGTCAAAGATAACAAATTATTACTT
TAATTTTTAAGGTAGAAAATTTTAAAGTAAACAAGTAATTTTAGCTATTT
CTACAAAACATAATGAATCACAGTATAATTATCATAATATATTAAACAAT
TTGAACTATAACATTACCTTAGTTTTTTATCTTAGGATCCTgccttaaaa
taaaaacatcaattcatttatttacaaaatacaCGTCATGAGTTTTCATG
CACATATAATTAAATACTTTTTAATATGGTCTTTTATTCCACATCAACTT
CAAAGAACAAACATAGTCTGGCTGATTTATGAAATAAAAGAGGTcaacct
tgaaaaaatttcgGCACTAGGTTTCTTGGTACCGTTagaagcgcaatttt
atgtagattaacatactcagagcctcacgaTGAGGCCCTTGGGCAAAACA
TTTTATGAAATCAAACCTGAGGGAtacttttttgcccaaaatgcctggaa
ttggaattttcgtaacaAAGCTGACCTATACGTCATGAACTTTTAAGGCC
TAAAAAACTCCTTTGATTAAATCTTAATTAGTATTTATGAATTGCATTAA
AATAAAGACTtcctaaaaatattaaaattcggGTTTTTCGGGAATAATGG
GCcataaaaatcggaaaatcggggaaactgcTCCGAAAACCTCAATAGAT
ATTGAAAATATGACAAACTAACGCTTATTAATATCATGACAGGTTGACAA
ATCTAGCTCTAAACTTCTGAAACCTTGTGAAAGCCAAAATAATGGTAAGG
ATCTAGTTCTTcaggaaaatcggatttttaaaatccaaaaatcgggaaat
aaATGTTACAAAACTTAACTTCTCTTTTAGAAATTCACATAAGTATTTCA
GAAAGTGCTAGACATAAAATGGTCACAACTTTTGAACTTCTTTTAAGTAA
AGTAACGTTAAAAAGTTATGAAATAGGTTTTCGGTGAAAACGGGCTCACA
TAATCGGGAAATTGGGCACAGAGAATCGGGAAATTGAGAAATAAAAGATA
AATTATGCTTTAAAAATTCATGAGATTTCTCAATCTTTAAGTTTGTGAAC
TTTGCTCTTTGAAAGCCAGGGAttaaaaatgctttgaaaatcGGAATAAA
CATTAGAAATGAAATAACTTGTTGAGtataaaaatcggggaaacttttCA
AGAAGCCTAAAtgtagtaaaataaaaattatgtaaTACTAAGTTTTGATA
TCACAAAATCTATTAGAAAGTCTAAACTAGTGTTTCCAGAATGTCAAAGA
TATTCCTCTCACTCGTCAAAGGCTCGTCAGTTTCATTATCTGAATCGGGT
GGTGGAGCTTCTGCGTTTTAACACCCTTCACCATGACACCCACCACATGC
AGCATCACAATAAAGCCCATTGCGACATAAGTTTGAGCTGCATGGTCGCC
GGGAACTTGTTTTGCAATTGCATCGTACTACTTTAAGAAGCCACTTTGAT
GCATAGGATAGTCCTCTTTCCACAATCAACACATCTGCATCACCGTCAAT
TTGGTCTGTCAGGAATCCTTGCTTCTTGAACACAGACGAAAGCATTTTGA
TCAACTGAACTTTGTTGGATGGGCTAGATAAGAACAATTCTCTGTTGGTA
GTCACTTTACGATCTAGTGAGATGGCAACAGAAGCTGATGTTTTCCCCGA
TCGTCGATCGTGTTCTTGTCCTTTTGTTGACATTTCATCCTCGTATCTAT
CGAAAACAATGACGACAGTAGAGTAACAATTGAAATTGTTCTTGAGGAAG
TTGAAATACTCGTCGATCACCGCTGAATGTGTTGTTTTCGGCCACGAGTT
TTTGTGTAGCAATGAACCGCCATCAACGATGCATACATCGTGAGATTTTA
ATTGGCATGCGTTTCTTTTGTTGATGAAACAATAAACTCACCGGTTTCGT
GAGCTGAGAACCAGTTGCTCTGTCTCCGAGATACCACGTTGGCATCGTTG
GATTCATCAGGCGGTAACCTCCACAGCGTCTTCTGTTTCGCCCCCTTGCT
GCGACAGACTATGGAGGTGGAGGGCACCTCCCATGAGGTATCCAACGTGG
TGACTGACTTCTTCAGTTTGCAACGTTTCTCTTGGTCCAAATAAACCGAC
TTGCATTCTCAACAGTTTCCTCGATCTGCTCAaccattttttttccttca
gtACGATTAAAACCAAGATGCTTTAGTTCTGAGACCAACAAAACCTCTGA
ATCCGACTTCAACGGGTAGACAAGTGACAGTCCAACCGTGANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGACCC
AGCCAGTTCCTTATCTTCAGGGACATTTTCTGTTGAATAATATTCACCCT
TGAAACAGCAACTTCGTAGAAATTTTAACCAACATCCTCAGTGAAGTTGC
CAAGAGCAGTTAGTCGACTAAACAATATTGTTGGACTTGGAATCCCTCTT
CCAACGTCTTCGGGGCTTCGGCGACGTCACAGTTAATCTCTGGCCCAGCG
ATCAGCCCACTCGAGAGACTCTTCAATTCAGGCTCTGTTTTTTCGAACGG
TTCGTGGTTGCCAAACCAATTCTTCACGGTAGCGAAATCTTTATCGCCAC
ACTTCATTCTGCTCAACGAAAGATTGACATGTTGCTCGCTTGTTTTACGG
CATGCACCGGTAAGGGCTGACATAGCGTTGTGGATGTCGGCAGATCTGTG
GATGCCTCCGATCCGAAGTTGACTCGGCGATTCCACTCCCACGATTGAGC
CCTCCGTTGCTTTTGATGGGTCGCATTATTATCTGCTCGATGATCAAATC
CGACCATAAACCAGCCCAAAATTTATCGCTTCGTTTCACAGTGTGGTAAT
CATTTGAAAACTGCTTGTAAACCCAAGTGTGAGTTGTCTTGAGCTCGAGC
ATATTTTAGAGGTGTAGCCGTGTGATCTTAGCGTAATGGATGTGACCGGT
TGCTGTAAACAGGTTGATCATCCGAGAAAGGGTGAAAAGGTAAAGGTTCC
AATCTCCTGTCCTTTCTGATCTAATGAAATCCTTTACAACTTTCATGTAA
TCCAGATATTGCAACCATAATTTCGCAGTACGTGAGCATGTTTTCAGATC
ATCTTTGTAATTTTCCATAAGTTTCGACAGTGTTGGATATCTGCTCATGT
CCAAATCAATGGTGGGATCAACAGCATTGGCAATCATGTTCAGATCAGTT
GTCAGATCTTCGATTTCTACAGCCTCATCATCAGAACCAACAAGTGTTGA
CATCAATTTTCAAACAAGAGCTGATTCAACTAGAAAATGTGCCCTCAGGG
CTCTGGCAATGGCTTTACTACTTATGATGTGTAAAGGATGGGGTATATTA
TTGAAAAGAGGAAATaaagcaatgcaatgtctttgtcaaaaatcaaaacc
aatccGATAATTGTTCAGCCTGGCAAGGTCTGGTCGATcttcatattttc
aaagaaaatcgaggttttttcaaacaatttccccAATTTCCCGATTTCTG
GACCccgtttttccaaaaaaaaaggcgatttttaatatttttaagaagTC
CTTATTTTAATGCAATTCATAAATTCTAATTAAGATTTAATCAAAGGAGT
TTTTTAGGCCTTAAAAGTTCATGACGTATGGGTCAACTTTGTTACGAAAA
TTCAAATTCCGGTCATTTTGGGCTAAAAAGTACCCCTCAGGTTTGATTTC
AtaagattttttgcacaaggGCCTCAtcgtgaggctctgagtatgttaat
ctacataaaattgcgcttctAACGGTACCAAGAAACCTAGTGCGGAAATT
TTTCAAGGTCAAATCCTATTTCAGCCAGACTAacagtcatcttttaaaaa
ccCATCAATATCCAATCTATTTAGTTCAATAAACATTGGGCACCCTGAAG
CTATGTTCATTTCCCTCTTTGGTTTGTGAAAACTTTCTGATCCTTTCTTA
GGATTAATTTCTATGATGTGGTCTTTGCTTCTGTCTTGTTGATTGATTGA
AGTGATTGATTAGAGTGCAGATATTATTTGGGTCAAAGATAACAAATTAT
TACTTTAATTTTTAAGGTAGAAAATTTTAAAGTAAACAAGTAATTTTAGC
TATTTCTACAAAACATAATGAATCACAGTATAATTATCATAATATATTAA
ACAATTNcaaaaaaatttgcggaatttcggaattggtaaaagatattcaa
aatttgcggaattttcgacaaaaatactgaatttcaaaggaattttcggt
gacgaaattttggttcaatttataTTACTTTATTCTTTAAGGTAAAAAAT
CTTACAGTAAACAAGTAATTTTAGCTATTTCTACAAAACATAATGAATCA
CAGTATAATTATCataatatattaaaaaatttgaactATAACATTACCTT
AGTTTTCTATCTTAGGATCCTGCCTTAGAATAAAAACatcttttcattta
tttacaaaatacaCGTCATGAGTTTTCATGCACATATAATTAATTACTTT
TTCAATACTATATGGTCTTTATTCCACATCAACTTCAAAGAACAAacagt
catcttttaaaaaccCATCAATATCCAATCTATTTAGTTCAATAAACATT
GGGCACCCTGAAGCTATGTTCATTTCCTTCTTtggtttttgaaaactttc
tgaTCCTTTCTTAGGATTAATTTCTTCGATGTGGTCTTTGCTCCTGTTTT
GTTGATTGATCAAagtgaatttgattttcttttggaaaggcCATTCCAAG
ATGTTGTCATAGTCTGATTTCATAAGAACCAAGAATAGTGATAAGTGTGT
TCCTTCTCCTACTCCATCTCCGTTTAGATAGGCCCTTAAACAAAATTTGT
ATCCGTATTCACTTGTATAGCATGGTGCACTATGTAAAGCACTGATATCT
CCAACTAAGGTCTGTTGGCGTCGCTGTCTAAAGTCGTCTATTTTCCATAG
CAATTTCCCATTCATTCGACTATTTTCAAGGAGTTGAAGACGCAGATCAA
CGTCGTTGATGTTTCTATGATTCTCCTCTGCACATTTATGTAATTTCCTT
AAATCTTGTCGTTGTGGTTGAACCATTTGCCTTGAAGCTTCCAGCATTTG
TTCGAAATCTTTCTTCATATTTGCCATttcgttttgaaagttttcaaatt
gGATCATACATCTTTGTTTGAACATTTCATAATTTATATCGGCTGATTCC
AATGCCATTTGTAGTTCGTCAACCCTTGATTTcagttctttgttttcttg
ttgttCCTCGAGTAATTGTTTGTGAAGGCATTCCATATTTACTGGTGTTG
TTGTTGAGTCGATCATTTTTCTTCGGTTCAATCGATTTATTTTTTCTGCC
AATATTTCCGTCCTAGGTACACTAGTACCAATCAGTTTTTAGAATActca
aaaattgagctttttgatactttttatgATTCCTTTGTGATAGTATACCA
GGTTTTTTGTCTTCTTTGGTTGAACGAGTGGGTTTGTCTTTGATTTCTGT
TGATAAAGAAAGACTAATTATCATATATAGACAAAGTCTACGGTGTCCGA
ACGCAAAACAGTACCCTTTTCATTAGACAAGGTGCAAAAACTATCAGATT
ACCATGACACGCAATTGTAACATGATAATATTATTCTAAAGCAGGCTTAA
GTATTGAGCAATATGCCTCAATAAGAAAAACATTGAATATAACGTAACAT
AAACAACAAGATCAAATACAAAAATACGTCAACTCgcttatttcttagaa
aaatcaaatttaaagacCAGGACAAAACCTCGTCAATTTTACGtcacaaa
aatctcaaatgtaCTTTTATGAGGCTGTAAGGCTTGGAAATCTGTCTTCT
GGAACGTGTCAAGCCAAACCCGAAAATTAGTTTGAATCTCGCTGATTTAC
TTATGCAGTTGCctaattctctaattcgatctccaAGGTATGAAGACTAT
TCTCCGAATTAGAATAAAATTCGAATTCCAGAGAGCATTCTACACTACTT
TCCAGCTGAAAAAGATCAATGCTTGAATTCGAATTAAATCGAATTTAAGA
ACGATCCGAATTATAGAGGGTTGACTGTATTCACAACTGAAAAAACCTTA
CCTGATTTTTGTGGAAGATTCTCCCTCTTGTTAACTCCTCCAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048022-exon-scaffold_14-1491911889:763884..763949 | TCONS_00048022-exon-scaffold_14-1491911889:763884..763949 | Clytia hemisphaerica | exon |
| TCONS_00048022-exon-scaffold_14-1510915933:763884..763949 | TCONS_00048022-exon-scaffold_14-1510915933:763884..763949 | Clytia hemisphaerica | exon |
| TCONS_00048022-exon-scaffold_14-1575043694:763884..763949 | TCONS_00048022-exon-scaffold_14-1575043694:763884..763949 | Clytia hemisphaerica | exon |
| TCONS_00048022-exon-scaffold_14-1491911889:764487..764525 | TCONS_00048022-exon-scaffold_14-1491911889:764487..764525 | Clytia hemisphaerica | exon |
| TCONS_00048022-exon-scaffold_14-1510915933:764487..764525 | TCONS_00048022-exon-scaffold_14-1510915933:764487..764525 | Clytia hemisphaerica | exon |
| TCONS_00048022-exon-scaffold_14-1575043694:764487..764525 | TCONS_00048022-exon-scaffold_14-1575043694:764487..764525 | Clytia hemisphaerica | exon |
| TCONS_00048022-exon-scaffold_14-1491911889:769611..771228 | TCONS_00048022-exon-scaffold_14-1491911889:769611..771228 | Clytia hemisphaerica | exon |
| TCONS_00048022-exon-scaffold_14-1510915933:769611..771228 | TCONS_00048022-exon-scaffold_14-1510915933:769611..771228 | Clytia hemisphaerica | exon |
| TCONS_00048022-exon-scaffold_14-1575043694:769611..771228 | TCONS_00048022-exon-scaffold_14-1575043694:769611..771228 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:763884..771228 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00048022 vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2) HSP 1 Score: 176.407 bits (446), Expect = 1.097e-47 Identity = 75/163 (46.01%), Postives = 113/163 (69.33%), Query Frame = -2
Query: 100 INDVDLRLQLLENSRMNGKLLWKIDDFRQRRQQTLVGDISALHSAPCYTSEYGYKFCLRAYLNGDGVGEGTHLSLFLVLMKSDYDNILEWPFQKKIKFTLINQQNRSKDHIEEINPKKGSESFQKPKKEMNIASGCPMFIELNRLDIDGFLKDDCLFFEVDVE 588
+ D+DLR Q+LE + NG L+WKI D+++R+Q+ ++G +L+S P YT +GYK C R YLNGDG+G+GTHLSLF V+M+ +YD +L WPF++K+ L++Q + + + P S SF+KP EMNIASGCP+F+ L+ ++KDD +F +V V+
Sbjct: 399 LADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVD 561
The following BLAST results are available for this feature:
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