TCONS_00048020 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048020
Unique NameTCONS_00048020
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1191

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048020 ID=TCONS_00048020|Name=TCONS_00048020|organism=Clytia hemisphaerica|type=transcript|length=1191bp
GTCATAAATTATCGAGACTTGAAAGGAATAAGTTAAATACTAAGAAAGGA
ATTATTTCAGAGAACTTTTGTAATCATGGCTAATGAATCTAAACGAGTAA
TTGAAAACACAGACACCACCACacaccattatggaaatgaaCATGACTAT
CAAGAAATCTTATTGGATAACATTCAACTTAAACAAACTGTGGACAACTT
ATTGGCGAGATTAAATGCAGCTGAGAAGAGATCCAAGGAGCAATATCAAG
AACTTCAAAAGGAGATTGCTGGATGCTCAAATAAAGTGACTAGTGGTACA
CTTGAGAAGAGCCCAATTCCTGATTTCAACATTTTAACAGAAGCAGTAGA
AAAAAATACAGAGAGTTTTAGTGATTTGGATTTGAAATTCCAACTCCATG
AGAACTCGGTCAATGACGGGCATCTTGTTTGGAAGATCAACAATTTTCAA
CAACGAACGACTGATGCAATTATTGGCAAGACAAGAGCATTGCATTCCGC
TCCTTGCTTCACGAGCAAGTATGGGTACAAGTTTTGCCTAAGGCTGTATC
TACACGGTGATGGTATGGGTAAAGGAACACACTTGTCACTTTTCTTGGTT
CTTATGAAATCAGAATATGACAACATTTTGGAATGgcctttccaaaagaa
aatcaaattcactTTGATCAATCAAGAGGACAGAAGTAAAGATCATGTGG
AGAAAATGTTTCCAAACAAAGATtcatcaagctttcagaaaccGAAAAAA
GATATGAACATTGCTTCAGGTTGTCCAATGTTTATGAATTTGAACAGATT
GCAGCCTGAAGGATTTTTAAAGGACGACTCTTTATTTGTCGAGGTtaaaa
tagattaaatttttacACCGTTTTGTGATCTCAAGAAATAGTAACTTAtt
aatttaaatattttcataattattatttattattatttttcaaaaatgaa
aagtcGATACACATAAACATTTTACCCTGATTTGTAATTTCGAGAAATTG
TAATTTATTGATTtagatatattttttataattaatatttattaatattt
tttcaaaattgaaaagtcAATACACCAAACATTTTGCAACATATCTTATA
ATTCTCTCTTTTATATTCAAGTTCCATTATTAtcacacacccccttctca
tagacccacttccactggaaaaaatggccaaaaaatccTCC
Run BLAST on NCBI

transcript from alignment at scaffold_14:748179..749369+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048020 ID=TCONS_00048020|Name=TCONS_00048020|organism=Clytia hemisphaerica|type=transcript|length=1191bp|location=Sequence derived from alignment at scaffold_14:748179..749369+ (Clytia hemisphaerica)
GTCATAAATTATCGAGACTTGAAAGGAATAAGTTAAATACTAAGAAAGGA
ATTATTTCAGAGAACTTTTGTAATCATGGCTAATGAATCTAAACGAGTAA
TTGAAAACACAGACACCACCACacaccattatggaaatgaaCATGACTAT
CAAGAAATCTTATTGGATAACATTCAACTTAAACAAACTGTGGACAACTT
ATTGGCGAGATTAAATGCAGCTGAGAAGAGATCCAAGGAGCAATATCAAG
AACTTCAAAAGGAGATTGCTGGATGCTCAAATAAAGTGACTAGTGGTACA
CTTGAGAAGAGCCCAATTCCTGATTTCAACATTTTAACAGAAGCAGTAGA
AAAAAATACAGAGAGTTTTAGTGATTTGGATTTGAAATTCCAACTCCATG
AGAACTCGGTCAATGACGGGCATCTTGTTTGGAAGATCAACAATTTTCAA
CAACGAACGACTGATGCAATTATTGGCAAGACAAGAGCATTGCATTCCGC
TCCTTGCTTCACGAGCAAGTATGGGTACAAGTTTTGCCTAAGGCTGTATC
TACACGGTGATGGTATGGGTAAAGGAACACACTTGTCACTTTTCTTGGTT
CTTATGAAATCAGAATATGACAACATTTTGGAATGgcctttccaaaagaa
aatcaaattcactTTGATCAATCAAGAGGACAGAAGTAAAGATCATGTGG
AGAAAATGTTTCCAAACAAAGATtcatcaagctttcagaaaccGAAAAAA
GATATGAACATTGCTTCAGGTTGTCCAATGTTTATGAATTTGAACAGATT
GCAGCCTGAAGGATTTTTAAAGGACGACTCTTTATTTGTCGAGGTtaaaa
tagattaaatttttacACCGTTTTGTGATCTCAAGAAATAGTAACTTAtt
aatttaaatattttcataattattatttattattatttttcaaaaatgaa
aagtcGATACACATAAACATTTTACCCTGATTTGTAATTTCGAGAAATTG
TAATTTATTGATTtagatatattttttataattaatatttattaatattt
tttcaaaattgaaaagtcAATACACCAAACATTTTGCAACATATCTTATA
ATTCTCTCTTTTATATTCAAGTTCCATTATTAtcacacacccccttctca
tagacccacttccactggaaaaaatggccaaaaaatccTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030553XLOC_030553Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048020-exon-scaffold_14-1491911889:748179..749369TCONS_00048020-exon-scaffold_14-1491911889:748179..749369Clytia hemisphaericaexon
TCONS_00048020-exon-scaffold_14-1510915933:748179..749369TCONS_00048020-exon-scaffold_14-1510915933:748179..749369Clytia hemisphaericaexon
TCONS_00048020-exon-scaffold_14-1575043694:748179..749369TCONS_00048020-exon-scaffold_14-1575043694:748179..749369Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:748179..749369 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.37083	1.82934	1.96035	2.14037	0.332172	0.476779	0.59857	0.76391	6.63281	138.107	76.5497	100.514	190.142	201.416	291.556	209.16	57.8462	106.712	409.462	259.836	60.7561	121.082	2.77129	3.25531	0.743397	2.85251	105.21	98.6135	148.163	108.426
Blast
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BLAST of TCONS_00048020 vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 2.820e-50
Identity = 78/164 (47.56%), Postives = 122/164 (74.39%), Query Frame = 1 
Query:  367 FSDLDLKFQLHENSVNDGHLVWKINNFQQRTTDAIIGKTRALHSAPCFTSKYGYKFCLRLYLHGDGMGKGTHLSLFLVLMKSEYDNILEWPFQKKIKFTLINQEDRSKDHVEKMF-PNKDSSSFQKPKKDMNIASGCPMFMNLNRLQPEGFLKDDSLFVEVKID 855
             +D+DL+FQ+ E +  +G L+WKI ++++R  +A++GKT +L+S P +T  +GYK C R+YL+GDGMGKGTHLSLF V+M+ EYD +L WPF++K+   L++Q   S+ H+   F P+ +SSSF+KP  +MNIASGCP+F+    L+   ++KDD++F++V +D
Sbjct:  399 LADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQ-GSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVD 561
The following BLAST results are available for this feature:
BLAST of TCONS_00048020 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF32.820e-5047.56TNF receptor-associated factor 3 OS=Homo sapiens G... [more]
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