TCONS_00048011 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048011
Unique NameTCONS_00048011
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1945

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048011 ID=TCONS_00048011|Name=TCONS_00048011|organism=Clytia hemisphaerica|type=transcript|length=1945bp
GTCTACAGAAAATCAAGTGGCAAATATGAAAGCTTTTCTGGCCATTTCTT
CCCCTCCAGTAACAGCATCGAACTCGAATTCTATGAATTCCCTAAATGAA
TCCTCATCAATGAGTCTTTCCAGATTGGAAGCATTGCAAGAGAGCTTGCA
CGACAGTTTCTTGAACTCCCATTCAGATGACAGTGAACGTGAAAAGAACA
TGCAACGTTTCCTCCAAGAAGCTGCTTATTCATCTGAAAAATATGATCAA
GAAAAACCACCTTCGcttagtgatatgattgatctctcaaagaaaatgaa
gtCTTTTCAGATGCATTCCAGGGATACAACGATAGCATTTGATTTGAATC
AGACAGACCAGGATGTCAACCAAACTGAACTCGATTCTATCTTCATGAAA
GAGGTAAGAAAGAGATTGCAATTGACGAACGTGGACGAAACAATCAACCC
TTCACCGTTGGAAGAAGAAATTGATAAAACTGTTCTCAATTCTGATGAGG
ATGAAAATAACAATGCAGAAGATACACAaTCCGATGCGAGTGCTATAGCT
GAAAAAATTACAGAAGATCTGAGGAAAATCGATAATATGGACATGTGTAA
ACTTTACGGTGAAATCGAACGACCGCACCTTGACGGGAGTAGCAGTGATA
GTGATACAGATGTCAACCTTCAACCAACAAGCACCTCTGTTCAAAACTTC
GCACGAACCTCTATACAAACAAAACGTTTTGAACTTCAACATGAACTTGA
AGGATTGAATCTAGATAATATACCAGAGCGTCAATTAGCAGAAGGGATTG
ACAATGATTCAGAGACCTTCAACACCAACAACGATGGAGGAGGAGGGGGA
GGAGGTGATGGTAGTAGTGGCCCCGAAGATGAGATGGGTGGAGATGGTGG
TGTCCTCATAAGGAATCGAAGATTAGCGTCACAAGGAGTGGGCTCTGCAA
GCAACCACAGcgatgatgaagatgatgacGATCGTTCAACACCACCCAGC
AGGGAGAGACCTGTTGGGGGGTCAGGTAATAACAATGATGGTTCAGGATT
GCGCCAAGTTCATTTCGCCGCAAGTATCACAAACCAAATGTCAACTCCAA
CCTCATTGCCACTTGCTGCTGAACCTCAAAACAAGGTGGACACGACACCT
CAAGATTCTCGTCTTTCTGCGCGTTACTTTCTCGCTGCCAGCACTCCTTT
CAAATCTGACGAACCTGAAGACACCATGACCAACCCTCCAAATTGGATGA
ACCAAACGCAAAGTTTCCATATGGGCCAAGGACAGAGCACCCCAGGTGGA
AAGAGCGAAGAACGTACATTAATTGGCGCAAGTCGAGATGAAATGACTCT
TATGAATACTCCTTCTTCCATGACTTTGACGTATGTACTCATCATATTGG
TAGTTGCAATGCTCTTTTAGAAATATTGATTTACTGCTACGAATAAAGGA
CGCTCTTGGGAATGATGTGTACAGATCTTTCCTGGAGCCATTCCCACGGA
GGTTGTCTGGACTTGAAACAGCTTTTCTTTGGCATATTTAAAAACTTTGT
TACAGCTTCATACCGGGTGTGTTTTTACTTAAACATAATGGTAATTAACC
TAATCCCAGGATGTCACAGTCAAAGGCGATgaacatttttggacctaccc
cggtggggtagaggtcctataaataacctgtgttcgttcgttcgtctgtt
accaacttttctcaggattgaatcttAGGAAtcctttgatttttggtaca
aaggtgcaaaatggtggtgggcaaaatgtgacggagcccgattttcaaaa
aaagatttttttgggccaatatgggccaaaaaacggctaaaaaacgggtt
ttttaattgaatcattaattttttctgattttttgtatgaaagtagggta
ccatcataacaaaaaacgcatatttatctataagaatcactatta
Run BLAST on NCBI

transcript from alignment at scaffold_14:628039..633837+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048011 ID=TCONS_00048011|Name=TCONS_00048011|organism=Clytia hemisphaerica|type=transcript|length=5799bp|location=Sequence derived from alignment at scaffold_14:628039..633837+ (Clytia hemisphaerica)
GTCTACAGAAAATCAAGTGGCAAATATGAAAGCTTTTCTGGCCATTTCTT
CCCCTCCAGGTGACAAATTCaatcaattcaattttcaatcttATGAAGTT
TACCTCCGacagattttgtaaaaaattatcTCAATAGAAAGCCATACTGT
GTACCAGGTGGCTTTGTTTTATGAGATAAAGCCTCTAAAATCTGAATGAA
AATGATAAAgataaatgtttctaaaatgtcTAAATCTGCACacataaatt
ttaagttttgatttTAGTAACAGCATCGAACTCGAATTCTATGAATTCCC
TAAATGAATCCTCATCAATGAGTCTTTCCAGATTGGAAGCATTGCAAGGT
ACAATTCCTTCATTCAGCAGCATTCAGTTTACATATCGGATTCAAATTTT
ATTCTACTCCGAGTAATATGAGAGAAAATCCCTTTGATCCGTTTGATTGC
ACTTTTTTCCGAAATTACATTACTGTAGGTAGATCGTCAATTTAGCAGGC
TTAAGAATAAGAATTGAAGCGAAGGGTCCACTTTATAAATCAAGTGAATA
TTTTCTATTGCTTTTGCGATGTAAAGACTTATTTTAAAAGCAGTTACTAC
TGTTTTGTGCCTTCCTTGAAAATTCATGCCACTtacagttttttttgttt
ttttttaaagaaagtcaaaatattataaaGCTTCTGGATGTGATagactt
tcaaaatttcaagccttAAGATAGAGTATCCAAGAATATCAACAATCAAT
CTTCTTCAACTTCATCATTGTGCCAGGTTTTTCATGACTCAAACTCCTGG
TTATTCTCAAGGCTTTTTTAGTAAACAGTTTTTGGTGAAACTTACTAACT
CCATTTGATCTGTTTGTTTACAGAGAGCTTGCACGACAGTTTCTTGAACT
CCCATTCAGATGACAGTGAACGTGAAAAGAACATGCAACGTTTCCTCCAA
GAAGCTGCTTATTCATCTGAAAAATATGATCAAGAAAAACCACCTTCGct
tagtgatatgattgatctctcaaagaaaatgaagtCTTTTCAGATGCATT
CCAGGGTTTgtttactctgtaccagagtgtatctcacgtttatctcTTCG
TAGTACATTAgctgtagatactgggtctgtgtacggACAAGGGTTTGTTC
TGtcaaataaattcttttgaaatattctcctGCTTTTGGCTGCCTTTCTG
CCTAGCACCACTATATATATTCTACTTGGGCTAAGTATCTTTCTTAAAAT
AGGGAATAGTTGCAAAAAGTTGGAAAAACCGTCGTCTTTATAGGCACTTT
ATTAAAACTAGAAGAAGAAAATATTCggagacaaatgaaatttctccaaa
atttaatctttttagTGAATGTTACAATAGTTCATTGTCGATCAGCAATT
CTTCATGaatatttgatattatttgGTCACCCCTCTcttcttcttgattt
tttttcaatttttcattttcaactttttcatctttctcTCTTTCTTGTGC
AGGATACAACGATAGCATTTGATTTGAATCAGACAGACCAGGATGTCAAC
CAAACTGAACTCGATTCTATCTTCATGAAAGGTTTTTACACTTTTCACat
gtttgaaattcttttgattaTAAATCTAATTCAAAAGTGTTAGTGACATA
GTGTTATGTTGCAAAACACCCAGTCCGTTTTACGCTACCGGTGAGCAATA
TGCAAGTCAGCACTAAAAATCATGTAGCCTGTTTACATATAAAACAAACT
TTGACTGGAAAGTGCTAAATATTCCTGAGTAAAATTAGGCTTACTTGGTT
ATTGGAGGGCCTTCCTTTAAGAAGGCGTAAATAATTCATTCTACAGAAAG
CTGAATGATTTTGCATGGCTCTTGATTAAAAATCCTGGTGATTAATAAAC
AAAAAACTTGACTGAAACATTATTCGATCATTATTTTAATGGTAGTCTCC
AGTCCCCTTTAAATATATACTGTCCAGTTTCATGGTAAGACGACGATCAA
ATAGTTTAAATACTTTCTTTAGAGGTAAGAAAGAGATTGCAATTGACGAA
CGTGGACGAAACAATCAACCCTTCACCGTTGGAAGAAGAAATTGATAAAA
CTGTTCTCAATTCTGATGAGGATGAAAATAACAATGCAGAAGATACACAG
TAAGCTACCGAAACACATTTTTCTTCTTCCCAAAAAGTGTCAGAACTGGT
CTCAATAGTATGGTGTTCTTTAAAAGTCGCTGTTGTCTTTATCATTATAG
GATTGTTACAATCTAtttcgtttgtttgtttttcagaTCCGATGCGAGTG
CTATAGCTGAAAAAATTACAGAAGATCTGAGGAAAATCGGtcagttttat
tttcaattattcACTTTTTCATACACTGTCATTTACACTTTAAATATCAA
TTCTGAGAAGTCTAAAATGAAAAGCTAGAGATGTGtaaccaaaatcaaaa
taaaacatacaAAAACACATTTTTGTTGAACTATGTTTCGACCTCTTACG
TGTCTTTCCCgagttttaagtttttccaCCTTTTTTATTAATCAAGATAA
TATGGACATGTGTAAACTTTACGGTGAAATCGAACGACCGCACCTTGACG
GGAGTAGCAGTGATAGTGATACAGATGTCAACCTTCAACCAACAAGCACC
TCTGTTCAAAACTTCGCACGAACCTCTATACAAACAAAACGTTTTGAACT
TCAACATGAACTTGAAGGATTGAATCTAGATAATATACCAGGTAGGTTTC
ATGTTGTTTGCCTATTTGCTACCATGCAGCTGGTAGGAATTAGCCAATGG
TCTTCTCTGCAACTATTCTAAAATAATTTATCACAACACTAGACTACAAC
ACAAAAGATTAGATTTAGAGTCAAAGAATAAATTAGTATGGATCTTCATT
CATTTATTAACTTGAGAAAAGTTACTGCAAATAGTTTGGATAATGCAAAT
TTGGGTTTCCTTTGGGTATGTAATTACCTTGGAAACATAGATTTTTACTA
GAGCTTTCTAGGATGTCTATAAAAAGTGATATGATCTACCTTGAGAGCAG
ACTTTTGAAAAGCAATCAATGTTCTATTTCTGTTTCCAGAGCGTCAATTA
GCAGAAGGGATTGACAATGATTCAGAGACCTTCAACACCAACAACGATGG
AGGAGGAGGGGGAGGAGGTGATGGTAGTAGTGGCCCCGAAGATGAGATGG
GTGGAGATGGTGGTGTCCTCATAAGGAGTGAGTTGTTGATCCTACCCAAC
GgtgcttttgttttgatattttggttttttctttttacaagcCTTAATGA
ATTAAGGTTTTCAATCTGGTCCTCATAGTGGTTTCTGACTATCAAATCTT
AATAGCATTGAATATTGCTTCAAGCAACCATGCTACATGCGGCGCCAATC
TTCTAGCCCTTTGGACTTTTGATAAGGTTTTCATGTCTACTCTCTATGAA
AACCAAACTTGTGGTATTAAGCTTAAGTTTTAACCATAATCTTGTTCTGT
TTCTATATGTGTTTCTTTGTTACTAGATCGAAGATTAGCGTCACAAGGAG
TGGGCTCTGCAAGCAACCACAGcgatgatgaagatgatgacGATCGTTCA
ACACCACCCAGTGAGTTGTTAGTTTCCAGCCCTTTCAGCAGATTGTttgg
tttttgaatttttcaaatctgTTCTTCTTTGGCACtagaatttttcaata
aggggcGAATTTTTCGAGGTGGAAATTCACGCAGCGTCAATCTTTTCCTC
TGACATATGCAAATATGGTACGGTAGTTCAGTCTATAGAACATTCAACTT
GCAATCTGAGAGGTGTGCGTCCAATCACCGGCATCGCCAACGGGTaactg
atctaggcggtaagtaaTTGGGATCAGAGGGTGCGTGTGGTGCTCTACTT
TATGAACTTGTAGATTGTTTGTAATTTCTATAATTGAGGTTTTCTtgttt
ctcttctcttttttcCAGGCAGGGAGAGACCTGTTGGGGGGTCAGGTAAT
AACAATGATGGTTCAGGATTGCGCCAAGTTCATTTCGCCGCAAGTATCAC
AAACCAAATGTCAACTCCAACCTCATTGCCACTTGCTGCTGAAGTAAAGA
TTTCATTACTCAGAACTTTCTTTATTTCGAAAATATTGTTCCTTGCAACA
GACTCCTTTCTTATTTCTTCCCCATCGCTGTTTGAGAAATTATATCTCAA
TGATTTCGCCACCCAATACAAGAAACTAGACTTCATATAACTTGCCGATT
TATTGGTGGTAATTAAAATGTGATCATTCTTAAAAAGAGACACTGCATTT
AATTAGTAAACTCGGCATAACCATGTTTTATTTAATATCATTGCAAAATC
GGAAGGTATAAATTTTATCAATTAACATAAAGACGACCTTAGAATTTTCC
CTTCTCTCTTCAGCCTCAAAACAAGGTGGACACGACACCTCAAGATTCTC
GTCTTTCTGCGCGTTACTTTCTCGCTGCCAGCACTCCTTTCAAATCTGAC
GAACCTGAAGACACCATGACCAACCCTCCAAATTGGATGAACCAAACGCA
AAGTTTCCATATGGGCCAAGGTAAATGTTTTTCTTGAAGAAGAGCGTGAT
TCACTCTCTCGCTGGTCAcgaacattgagtttcaagcccgaagggctaga
tgcaatacttctggatgggaaatgaaaccacttatttcccatccagaacg
cccgcgcgtaggttttacacaaacgccggattgaaattaaaatctatcgc
tagatttcaaaaaatgtagtcctctaaaacaaaggaaccactcAGTACAA
TCTGTCGTCATAATTACgacgcgttctatgcgcgttttggatgggaaata
agtggcttcaatttctcttgtctgagaagggttaaagtttcgcctctaac
CCTTTGGGCTTGAAACTCACTGGTCACAGAGATACAGTTTAACAATTCCC
ATGACATGAAGCTAGATGTTGTATCTATCTCATTGGTTATATAAAATGGG
TGTGAGCTTCTGGACATTGTGTTATTTTGTGACACTTTTACCATAGGGTA
TAAGAATAAATGAATAGTTGAGCGCCAGTTTCATAAcattgttctttatt
tttgaagataaccaTTCTTTTCTCTTGAACGTAGGACAGAGCACCCCAGG
TGGAAAGAGCGAAGAACGTACATTAATTGGCGCAAGTCGAGATGAAATGA
CTCTTATGAATACTCCTTCTTCCATGACTTTGACGTATGTACTCATCATA
TTGGTAGTTGCAATGCTCTTTTAGAAATATTGATTTACTGCTACGAATAA
AGGACGCTCTTGGGAATGATGTGTACAGATCTTTCCTGGAGCCATTCCCA
CGGAGGTTGTCTGGACTTGAAACAGCTTTTCTTTGGCATATTTAAAAACT
TTGTTACAGCTTCATACCGGGTGTGTTTTTACTTAAACATAATGGTAATT
AACCTAATCCCAGGATGTCACAGTCAAAGGCGATgaacatttttggacct
accccggtggggtagaggtcctataaataacctgtgttcgttcgttcgtc
tgttaccaacttttctcaggattgaatcttAGGAAtcctttgatttttgg
tacaaaggtgcaaaatggtggtgggcaaaatgtgacggagcccgattttc
aaaaaaagatttttttgggccaatatgggccaaaaaacggctaaaaaacg
ggttttttaattgaatcattaattttttctgattttttgtatgaaagtag
ggtaccatcataacaaaaaacgcatatttatctataagaatcactatta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030551XLOC_030551Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048011-exon-scaffold_14-1491911889:628039..628097TCONS_00048011-exon-scaffold_14-1491911889:628039..628097Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1510915933:628039..628097TCONS_00048011-exon-scaffold_14-1510915933:628039..628097Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1575043694:628039..628097TCONS_00048011-exon-scaffold_14-1575043694:628039..628097Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1491911889:628306..628386TCONS_00048011-exon-scaffold_14-1491911889:628306..628386Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1510915933:628306..628386TCONS_00048011-exon-scaffold_14-1510915933:628306..628386Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1575043694:628306..628386TCONS_00048011-exon-scaffold_14-1575043694:628306..628386Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1491911889:628912..629093TCONS_00048011-exon-scaffold_14-1491911889:628912..629093Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1510915933:628912..629093TCONS_00048011-exon-scaffold_14-1510915933:628912..629093Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1575043694:628912..629093TCONS_00048011-exon-scaffold_14-1575043694:628912..629093Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1491911889:629541..629619TCONS_00048011-exon-scaffold_14-1491911889:629541..629619Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1510915933:629541..629619TCONS_00048011-exon-scaffold_14-1510915933:629541..629619Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1575043694:629541..629619TCONS_00048011-exon-scaffold_14-1575043694:629541..629619Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1491911889:630061..630187TCONS_00048011-exon-scaffold_14-1491911889:630061..630187Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1510915933:630061..630187TCONS_00048011-exon-scaffold_14-1510915933:630061..630187Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1575043694:630061..630187TCONS_00048011-exon-scaffold_14-1575043694:630061..630187Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1491911889:630325..630377TCONS_00048011-exon-scaffold_14-1491911889:630325..630377Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1510915933:630325..630377TCONS_00048011-exon-scaffold_14-1510915933:630325..630377Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1575043694:630325..630377TCONS_00048011-exon-scaffold_14-1575043694:630325..630377Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1491911889:630585..630779TCONS_00048011-exon-scaffold_14-1491911889:630585..630779Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1510915933:630585..630779TCONS_00048011-exon-scaffold_14-1510915933:630585..630779Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1575043694:630585..630779TCONS_00048011-exon-scaffold_14-1575043694:630585..630779Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1491911889:631128..631265TCONS_00048011-exon-scaffold_14-1491911889:631128..631265Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1510915933:631128..631265TCONS_00048011-exon-scaffold_14-1510915933:631128..631265Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1575043694:631128..631265TCONS_00048011-exon-scaffold_14-1575043694:631128..631265Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1491911889:631565..631648TCONS_00048011-exon-scaffold_14-1491911889:631565..631648Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1510915933:631565..631648TCONS_00048011-exon-scaffold_14-1510915933:631565..631648Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1575043694:631565..631648TCONS_00048011-exon-scaffold_14-1575043694:631565..631648Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1491911889:632007..632131TCONS_00048011-exon-scaffold_14-1491911889:632007..632131Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1510915933:632007..632131TCONS_00048011-exon-scaffold_14-1510915933:632007..632131Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1575043694:632007..632131TCONS_00048011-exon-scaffold_14-1575043694:632007..632131Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1491911889:632452..632608TCONS_00048011-exon-scaffold_14-1491911889:632452..632608Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1510915933:632452..632608TCONS_00048011-exon-scaffold_14-1510915933:632452..632608Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1575043694:632452..632608TCONS_00048011-exon-scaffold_14-1575043694:632452..632608Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1491911889:633173..633837TCONS_00048011-exon-scaffold_14-1491911889:633173..633837Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1510915933:633173..633837TCONS_00048011-exon-scaffold_14-1510915933:633173..633837Clytia hemisphaericaexon
TCONS_00048011-exon-scaffold_14-1575043694:633173..633837TCONS_00048011-exon-scaffold_14-1575043694:633173..633837Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:628039..633837 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.30637	4.89409	4.43276	4.73829	6.83674	4.61481	4.17842	3.79929	2.00315	2.2463	1.7145	1.3618	1.19884	1.17016	0.725377	0.813491	1.8414	1.30635	0.871673	0.478127	0.976938	1.21261	0.447356	0.559444	1.59155	1.80601	1.0115	0.499223	0.431339	0.587778
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048011 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top