TCONS_00048005 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048005
Unique NameTCONS_00048005
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048005 ID=TCONS_00048005|Name=TCONS_00048005|organism=Clytia hemisphaerica|type=transcript|length=1459bp
CTGGCATCTTTCATCGTTCTTGCAGCTACAGTGATTATCATTTGGAGTTC
AATGAAAAACAACAGAAATATGACGAACGCGTTCACATTGATAAACAAAA
TGGTATCCTGATCTACAGAGTGCCAAAACACGCTGGAGTGGTTGCTGCTC
ACTATTTGAAAGATTTCAAcagtttttattcaaattctcgAAATTGAGCG
TGATCAGGATTTTTGTGGACAAGAAATGTTACGTCTCAAAAATGTCCCAA
GATGAACCAACAATGGACGAAGTAGAATTTGGAATGAAAAAGGCCGGTGG
TGTATTCGACTTCAGAAAATACTGGATTGAAACAGAAGAAATTGTTCCTA
TCGGTCATTCCAACAAATTGAACCTTTCacccgccattttgaatttctgt
GGAAGTTTTGATATCATGGACACTGTGGAAAGTACGGACCAAATGGAACA
AGCCCTCAAACAAAAAGCTATCGctGACTTCACAAACGGGAAAAGTAAac
gattgattgtcaataacTACGTTTACTGCAAAAATGATGGCGCACAGATG
ACCGCAGAAATGGTGAGATGTAATAACCGATGGGATAACCTCGAGTTCAG
ATGCAAAGTTGTCATTCAAGGCTTGTGTACATACCGTGTTACATGCAAGC
AAGCTGGTTCAGGGTATAATTGCCCTGGAGTTCACAAATACCATCATATT
AACTGCTGTTCCCTCAAATGCAAACTCTAAAGAAACAGCTATctttcttt
tctaaaaaaataggCCGGTTTCAAAGATATCCGTGAACAGTTTTAACTTC
TTGGTACAACATTCACAAATGCCTTTGTCAGCTTCTTCTCACCATAAGTG
AACTTCAGTGGCCCCTCAAttcatcacgcaatcacgcaattttctttcga
aattcacgcatttacgcaaattatttttcaattctcatgcattcacgcaa
ccgcaaaaagcccattcacgcaaaccgctgggggcctggATTGAATGTCC
TTTTCTTCATACTCTTTCTTATTCTTGTTGgtatttgatttttatttctt
taccCTGCAATCATGATCGAAATCTTTTGAGAATTCAGCTTATTTCCGCG
AGAATATcaattttgggccatctctcaaatttaatcggatattttatttc
aatttggctcgggtttataggcctccaggctatattatgagccttattgg
accactttttaacttttggatcctcaggtCCTAATTGtattaagtctcat
gttaaaactcagagttaaaactctacccttccaatctactttagagcact
tacaaatcgattgtggtttcaaaacttcctggtggatttcccttttttct
caaatattacgaccatgattgtggtTGGTGTAAGTCTGTTAAGTTTTTTA
AGATATTGTCTTGAATTCttctttgataatttttaacGCGTTCCGGTTTC
CATATCTTA
Run BLAST on NCBI

protein sequence of TCONS_00048005-protein

>TCONS_00048005-protein ID=TCONS_00048005-protein|Name=TCONS_00048005-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MSQDEPTMDEVEFGMKKAGGVFDFRKYWIETEEIVPIGHSNKLNLSPAIL
NFCGSFDIMDTVESTDQMEQALKQKAIADFTNGKSKRLIVNNYVYCKNDG
AQMTAEMVRCNNRWDNLEFRCKVVIQGLCTYRVTCKQAGSGYNCPGVHKY
HHINCCSLKCKL
Run BLAST on NCBI

transcript from alignment at scaffold_14:590141..593450+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048005 ID=TCONS_00048005|Name=TCONS_00048005|organism=Clytia hemisphaerica|type=transcript|length=3310bp|location=Sequence derived from alignment at scaffold_14:590141..593450+ (Clytia hemisphaerica)
CTGGCATCTTTCATCGTTCTTGCAGCTGTAAGTATAACTTGACGAAATTT
TGCAACGAATACTATACCTAGAGAGTACGGATCAATGTAAAAGATATAgt
tctttcaaaaaagacaAAGGGTTTTATCCATCACTTTGTAAAATCTTACC
CAAATCTACATAACACCGTCTACATCAGGTCCAAAGGTTCACCAACAAAG
AATTTCTCTGGGACTAAAAGCTTTGTTCAAATATTCCGTTCAACTGATGA
ATTCTGTTTCTGCCTGAATGGTTTTGACAGTGGAACTAACCGCCAAGATT
CCACCCTACCGCTTCTTTGCAAATTGTACACCCCCTAAAAACTTTTCCTT
GCAATGAATTATCAATTTTGTGCAAAGATTTTGAATGaataaaagcaaaa
agtattttCCGATGGATGGATCCAGCAATTTTTTtagtcatctcaaaagt
aattTCTGCCACCTTAACCCCTATTCTTTAACGCTTaatcaatatttcat
tttctcttttttctcatcAGACAGTGATTATCATTTGGAGTTCAATGAAA
AACAACAGAAATATGACGAACGCGTTCACATTGATAAACAAAATGGTATC
CTGATCTACAGAGTGCCAAAACACGCTGGAGTGGTTGCTGCTCACTATTT
GAAAGATTTCAAcagtttttattcaaattctcgGTAAATGAAAGACTAGT
AAACcccgtcgttgtatttcgctgcataTCAAACTTGCAATTGGCTCTAT
GTCTATATGTTCACTAGATACAATATGtctttccaaaccactctccctcg
gcaatttctattttctataagaactctttattataagaagcactattccc
gcgttcctgtgtccaaagAAAGACATacgcttgctagtctaggtAAAAGT
GAGTGCTCGATTGTTTGTAAACTAACCATAACATTTCTGCATTTCCTTCC
CCTTAGAAATTGAGCGTGATCAGGATTTTTGTGGACAAGAAATGTTACGT
CTCAAAAATGTCCCAAGATGAACCAACAATGGACGAAGTAGAATTTGGAA
TGAAAAAGGTTAGTAACATTTAAAAAGTGCACTAACTTTATGAGTTCTCT
GAATCAACTCATAATATAAATTAGAAGCTTCAGACTTTAGACTTGATACA
ATCTTAACCGTTTGTGCTTCTAAATATAATCCCACTCACGTACATAGAAA
ATTATCTGGTATGGAAagtcaaagtaaaaaaaaatctttcaaagttACAT
ATCATCTTTATTTCACTACAAGGCCGGTGGTGTATTCGACTTCANaaaaa
atctttcaaagttACATATCATCTTTATTTCACTACCAGGCCGGTGGTGT
ATTCGACTTCAGAAAATACTGGATTGAAACAGAAGAAATTGTTCCTATCG
GTCATTCCAACAAATTGAACCTTTCacccgccattttgaatttctgtGGA
AGTTTTGATATCATGGACACTGTGGAAAGTACGGACCAAATGGAACAAGC
CCTCAAACAAAAAGCTATCGGTAAGAGGAACACTAAATAGTTTATTTATA
AATTACTGTATTCCTGTGAAATGCAATGCACGGATCACTGGATAATCATT
GATAGAAAATGACCCTGATAATAAATCGCTTCTTACACAATCAGCATata
aatatattgagaattttgcttatttcctcgtttttcgaaatttcgaaaaa
gtcttATTTAGGCTATTTGTTAAATGTAATCGAATATTCAATTCGGGAGG
GTTTTATGGGCTTTCAGGAccatattctgagccttattagaccattcttg
aacttttggatcctcagatcctaaggtcctaagtctagcgttaaaaatCA
GAGTTTAAACTTTACCCCTCCAACTTAACTtcttagagcgcttccaaatc
gtttgtggctatcagatttcgtgggaattccccttttttctgaaatacAA
ATTGTGACCTTGATTGTAATCTAATATAGTAGAGTTTCTtcaactcaaat
gtctccttaactcgaacaaattttctcgttccttcagttaacaatgcctt
ataaacctttccTCCATAACTCGAGCAAATTTGTGTAGTTCCCCGTGTGG
CCGTGTTCGAGTTtcagagactccactgtatttatCCCACAGCTGCCTCG
GTGACCTAGTGTTTTTTTCTCGCTCTATTCAGTTTTGGCTCCCTCAGGTA
AATGAAACGGAGTTCTACTTAATACTCGACTGGaatattttaacaatttt
gactTTACTGTAGGCCCTTAGTTTAAACAACTATTTAGCAAAGTTTTCAG
CagtattttctttgaaatttttagctGACTTCACAAACGGGAAAAGTAAa
cgattgattgtcaataacTACGTTTACTGCAAAAATGATGGCGCACAGAT
GACCGCAGAAATGGTGAGATGTAATAACCGATGGGATAACCTCGAGTTCA
GATGCAAAGTTGTCATTCAAGGCTTGTGTACATACCGTGTTACATGCAAG
CAAGCTGGTTCAGGGTATAATTGCCCTGGAGTTCACAAATACCATCATAT
TAACTGCTGTTCCCTCAAATGCAAACTCTAAAGAAACAGCTATctttctt
ttctaaaaaaataggCCGGTTTCAAAGATATCCGTGAACAGTTTTAACTT
CTTGGTACAACATTCACAAATGCCTTTGTCAGCTTCTTCTCACCATAAGT
GAACTTCAGTGGCCCCTCAAttcatcacgcaatcacgcaattttctttcg
aaattcacgcatttacgcaaattatttttcaattctcatgcattcacgca
accgcaaaaagcccattcacgcaaaccgctgggggcctggATTGAATGTC
CTTTTCTTCATACTCTTTCTTATTCTTGTTGgtatttgatttttatttct
ttaccCTGCAATCATGATCGAAATCTTTTGAGAATTCAGCTTATTTCCGC
GAGAATATcaattttgggccatctctcaaatttaatcggatattttattt
caatttggctcgggtttataggcctccaggctatattatgagccttattg
gaccactttttaacttttggatcctcaggtCCTAATTGtattaagtctca
tgttaaaactcagagttaaaactctacccttccaatctactttagagcac
ttacaaatcgattgtggtttcaaaacttcctggtggatttcccttttttc
tcaaatattacgaccatgattgtggtTGGTGTAAGTCTGTTAAGTTTTTT
AAGATATTGTCTTGAATTCttctttgataatttttaacGCGTTCCGGTTT
CCATATCTTA

Coding sequence (CDS) from alignment at scaffold_14:590141..593450+

>TCONS_00048005 ID=TCONS_00048005|Name=TCONS_00048005|organism=Clytia hemisphaerica|type=CDS|length=1467bp|location=Sequence derived from alignment at scaffold_14:590141..593450+ (Clytia hemisphaerica)
ATGTCCCAAGATGAACCAACAATGGACGAAGTAGAATTTGGAATGAAAAA
GGCCGGTGGTGTATTCGACTTCAGAAAATACTGGATTGAAACAGAAGAAA
TTGTTCCTATCGGTCATTCCAACAAATTGAACCTTTCacccgccattttg
aatttctgtGGAAGTTTTGATATCATGGACACTGTGGAAAGTACGGACCA
AATGGAACAAGCCCTCAAACAAAAAGCTATCGctGACTTCACAAACGGGA
AAAGTAAacgattgattgtcaataacTACGTTTACTGCAAAAATGATGGC
GCACAGATGACCGCAGAAATGGTGAGATGTAATAACCGATGGGATAACCT
CGAGTTCAGATGCAAAGTTGTCATTCAAGGCTTGTGTACATACCGTGTTA
CATGCAAGCAAGCTGGTTCAGGGTATAATTGCCCTGGAGTTCACAAATAC
CATCATATTAACTGCTGTTCCCTCAAATGCAAACTCTAAATGTCCCAAGA
TGAACCAACAATGGACGAAGTAGAATTTGGAATGAAAAAGGCCGGTGGTG
TATTCGACTTCAGAAAATACTGGATTGAAACAGAAGAAATTGTTCCTATC
GGTCATTCCAACAAATTGAACCTTTCacccgccattttgaatttctgtGG
AAGTTTTGATATCATGGACACTGTGGAAAGTACGGACCAAATGGAACAAG
CCCTCAAACAAAAAGCTATCGctGACTTCACAAACGGGAAAAGTAAacga
ttgattgtcaataacTACGTTTACTGCAAAAATGATGGCGCACAGATGAC
CGCAGAAATGGTGAGATGTAATAACCGATGGGATAACCTCGAGTTCAGAT
GCAAAGTTGTCATTCAAGGCTTGTGTACATACCGTGTTACATGCAAGCAA
GCTGGTTCAGGGTATAATTGCCCTGGAGTTCACAAATACCATCATATTAA
CTGCTGTTCCCTCAAATGCAAACTCTAAATGTCCCAAGATGAACCAACAA
TGGACGAAGTAGAATTTGGAATGAAAAAGGCCGGTGGTGTATTCGACTTC
AGAAAATACTGGATTGAAACAGAAGAAATTGTTCCTATCGGTCATTCCAA
CAAATTGAACCTTTCacccgccattttgaatttctgtGGAAGTTTTGATA
TCATGGACACTGTGGAAAGTACGGACCAAATGGAACAAGCCCTCAAACAA
AAAGCTATCGctGACTTCACAAACGGGAAAAGTAAacgattgattgtcaa
taacTACGTTTACTGCAAAAATGATGGCGCACAGATGACCGCAGAAATGG
TGAGATGTAATAACCGATGGGATAACCTCGAGTTCAGATGCAAAGTTGTC
ATTCAAGGCTTGTGTACATACCGTGTTACATGCAAGCAAGCTGGTTCAGG
GTATAATTGCCCTGGAGTTCACAAATACCATCATATTAACTGCTGTTCCC
TCAAATGCAAACTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030549XLOC_030549Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048005-proteinTCONS_00048005-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048005-exon-scaffold_14-1491911889:590141..590167TCONS_00048005-exon-scaffold_14-1491911889:590141..590167Clytia hemisphaericaexon
TCONS_00048005-exon-scaffold_14-1510915933:590141..590167TCONS_00048005-exon-scaffold_14-1510915933:590141..590167Clytia hemisphaericaexon
TCONS_00048005-exon-scaffold_14-1575043694:590141..590167TCONS_00048005-exon-scaffold_14-1575043694:590141..590167Clytia hemisphaericaexon
TCONS_00048005-exon-scaffold_14-1491911889:590661..590823TCONS_00048005-exon-scaffold_14-1491911889:590661..590823Clytia hemisphaericaexon
TCONS_00048005-exon-scaffold_14-1510915933:590661..590823TCONS_00048005-exon-scaffold_14-1510915933:590661..590823Clytia hemisphaericaexon
TCONS_00048005-exon-scaffold_14-1575043694:590661..590823TCONS_00048005-exon-scaffold_14-1575043694:590661..590823Clytia hemisphaericaexon
TCONS_00048005-exon-scaffold_14-1491911889:591097..591198TCONS_00048005-exon-scaffold_14-1491911889:591097..591198Clytia hemisphaericaexon
TCONS_00048005-exon-scaffold_14-1510915933:591097..591198TCONS_00048005-exon-scaffold_14-1510915933:591097..591198Clytia hemisphaericaexon
TCONS_00048005-exon-scaffold_14-1575043694:591097..591198TCONS_00048005-exon-scaffold_14-1575043694:591097..591198Clytia hemisphaericaexon
TCONS_00048005-exon-scaffold_14-1491911889:591480..591660TCONS_00048005-exon-scaffold_14-1491911889:591480..591660Clytia hemisphaericaexon
TCONS_00048005-exon-scaffold_14-1510915933:591480..591660TCONS_00048005-exon-scaffold_14-1510915933:591480..591660Clytia hemisphaericaexon
TCONS_00048005-exon-scaffold_14-1575043694:591480..591660TCONS_00048005-exon-scaffold_14-1575043694:591480..591660Clytia hemisphaericaexon
TCONS_00048005-exon-scaffold_14-1491911889:592465..593450TCONS_00048005-exon-scaffold_14-1491911889:592465..593450Clytia hemisphaericaexon
TCONS_00048005-exon-scaffold_14-1510915933:592465..593450TCONS_00048005-exon-scaffold_14-1510915933:592465..593450Clytia hemisphaericaexon
TCONS_00048005-exon-scaffold_14-1575043694:592465..593450TCONS_00048005-exon-scaffold_14-1575043694:592465..593450Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:590141..593450 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0568223	0	0	0	0	0	0	0	0	0.0661217	0	0	0	0	0	0	0	0.080428	0	0	0	0.121188	0.447492	0.284369	0	0.677867	0	0	1.15864	1.98244
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048005 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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