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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048004 ID=TCONS_00048004|Name=TCONS_00048004|organism=Clytia hemisphaerica|type=transcript|length=1272bp
CTCAAAACGCAAAGGATCATCATACAGTCTTCAAAACATTGCATTTCAAA
CAATATGGGTTCATTCACTATCTTAGCTCTGGCATCTTTCATCGTTCTTG
CAGCTGCCGGTGGTGTATTCGACTTCAGAAAATACTGGATTGAAACAGAA
GAAATTGTTCCTATCGGTCATTCCAACAAATTGAACCTTTCacccgccat
tttgaatttctgtGGAAGTTTTGATATCATGGACACTGTGGAAAGTACGG
ACCAAATGGAACAAGCCCTCAAACAAAAAGCTATCGctGACTTCACAAAC
GGGAAAAGTAAacgattgattgtcaataacTACGTTTACTGCAAAAATGA
TGGCGCACAGATGACCGCAGAAATGGTGAGATGTAATAACCGATGGGATA
ACCTCGAGTTCAGATGCAAAGTTGTCATTCAAGGCTTGTGTACATACCGT
GTTACATGCAAGCAAGCTGGTTCAGGGTATAATTGCCCTGGAGTTCACAA
ATACCATCATATTAACTGCTGTTCCCTCAAATGCAAACTCTAAAGAAACA
GCTATctttcttttctaaaaaaataggCCGGTTTCAAAGATATCCGTGAA
CAGTTTTAACTTCTTGGTACAACATTCACAAATGCCTTTGTCAGCTTCTT
CTCACCATAAGTGAACTTCAGTGGCCCCTCAAttcatcacgcaatcacgc
aattttctttcgaaattcacgcatttacgcaaattatttttcaattctca
tgcattcacgcaaccgcaaaaagcccattcacgcaaaccgctgggggcct
ggATTGAATGTCCTTTTCTTCATACTCTTTCTTATTCTTGTTGgtatttg
atttttatttctttaccCTGCAATCATGATCGAAATCTTTTGAGAATTCA
GCTTATTTCCGCGAGAATATcaattttgggccatctctcaaatttaatcg
gatattttatttcaatttggctcgggtttataggcctccaggctatatta
tgagccttattggaccactttttaacttttggatcctcaggtCCTAATTG
tattaagtctcatgttaaaactcagagttaaaactctacccttccaatct
actttagagcacttacaaatcgattgtggtttcaaaacttcctggtggat
ttcccttttttctcaaatattacgaccatgattgtggtTGGTGTAAGTCT
GTTAAGTTTTTTAAGATATTGTCTTGAATTCttctttgataatttttaac
GCGTTCCGGTTTCCATATCTTA Run BLAST on NCBI transcript from alignment at scaffold_14:589755..593450+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048004 ID=TCONS_00048004|Name=TCONS_00048004|organism=Clytia hemisphaerica|type=transcript|length=3696bp|location=Sequence derived from alignment at scaffold_14:589755..593450+ (Clytia hemisphaerica)
CTCAAAACGCAAAGGATCATCATACAGTCTTCAAAACATTGCATTTCAAA
CAATATGGTAAGAAGTATCATTTTTACTCTCAAACTGCAATATTTTCATG
AAACGATAAGCAGATTTTTATTAAGTTCAGTTTCGGTGGACTCTCAATAA
TCTTAAattctataactcgaatcttTCTAGTTTCGAGTTCCCTCAGCTAA
AAAGTAGTGTAAAATcctctctataactcgaatcttTCTTTGATTCGAAA
AAACactcttggtcccttgaagatcgaattagagaattgcTGTAAAGCTA
ATATAACCTGTAATATATTTGATTGCTTTTATCATTCtctattttcacat
ttttgcaTGTTATAGGGTTCATTCACTATCTTAGCTCTGGCATCTTTCAT
CGTTCTTGCAGCTGTAAGTATAACTTGACGAAATTTTGCAACGAATACTA
TACCTAGAGAGTACGGATCAATGTAAAAGATATAgttctttcaaaaaaga
caAAGGGTTTTATCCATCACTTTGTAAAATCTTACCCAAATCTACATAAC
ACCGTCTACATCAGGTCCAAAGGTTCACCAACAAAGAATTTCTCTGGGAC
TAAAAGCTTTGTTCAAATATTCCGTTCAACTGATGAATTCTGTTTCTGCC
TGAATGGTTTTGACAGTGGAACTAACCGCCAAGATTCCACCCTACCGCTT
CTTTGCAAATTGTACACCCCCTAAAAACTTTTCCTTGCAATGAATTATCA
ATTTTGTGCAAAGATTTTGAATGaataaaagcaaaaagtattttCCGATG
GATGGATCCAGCAATTTTTTtagtcatctcaaaagtaattTCTGCCACCT
TAACCCCTATTCTTTAACGCTTaatcaatatttcattttctcttttttct
catcAGACAGTGATTATCATTTGGAGTTCAATGAAAAACAACAGAAATAT
GACGAACGCGTTCACATTGATAAACAAAATGGTATCCTGATCTACAGAGT
GCCAAAACACGCTGGAGTGGTTGCTGCTCACTATTTGAAAGATTTCAAca
gtttttattcaaattctcgGTAAATGAAAGACTAGTAAACcccgtcgttg
tatttcgctgcataTCAAACTTGCAATTGGCTCTATGTCTATATGTTCAC
TAGATACAATATGtctttccaaaccactctccctcggcaatttctatttt
ctataagaactctttattataagaagcactattcccgcgttcctgtgtcc
aaagAAAGACATacgcttgctagtctaggtAAAAGTGAGTGCTCGATTGT
TTGTAAACTAACCATAACATTTCTGCATTTCCTTCCCCTTAGAAATTGAG
CGTGATCAGGATTTTTGTGGACAAGAAATGTTACGTCTCAAAAATGTCCC
AAGATGAACCAACAATGGACGAAGTAGAATTTGGAATGAAAAAGGTTAGT
AACATTTAAAAAGTGCACTAACTTTATGAGTTCTCTGAATCAACTCATAA
TATAAATTAGAAGCTTCAGACTTTAGACTTGATACAATCTTAACCGTTTG
TGCTTCTAAATATAATCCCACTCACGTACATAGAAAATTATCTGGTATGG
AAagtcaaagtaaaaaaaaatctttcaaagttACATATCATCTTTATTTC
ACTACAAGGCCGGTGGTGTATTCGACTTCANaaaaaatctttcaaagttA
CATATCATCTTTATTTCACTACCAGGCCGGTGGTGTATTCGACTTCAGAA
AATACTGGATTGAAACAGAAGAAATTGTTCCTATCGGTCATTCCAACAAA
TTGAACCTTTCacccgccattttgaatttctgtGGAAGTTTTGATATCAT
GGACACTGTGGAAAGTACGGACCAAATGGAACAAGCCCTCAAACAAAAAG
CTATCGGTAAGAGGAACACTAAATAGTTTATTTATAAATTACTGTATTCC
TGTGAAATGCAATGCACGGATCACTGGATAATCATTGATAGAAAATGACC
CTGATAATAAATCGCTTCTTACACAATCAGCATataaatatattgagaat
tttgcttatttcctcgtttttcgaaatttcgaaaaagtcttATTTAGGCT
ATTTGTTAAATGTAATCGAATATTCAATTCGGGAGGGTTTTATGGGCTTT
CAGGAccatattctgagccttattagaccattcttgaacttttggatcct
cagatcctaaggtcctaagtctagcgttaaaaatCAGAGTTTAAACTTTA
CCCCTCCAACTTAACTtcttagagcgcttccaaatcgtttgtggctatca
gatttcgtgggaattccccttttttctgaaatacAAATTGTGACCTTGAT
TGTAATCTAATATAGTAGAGTTTCTtcaactcaaatgtctccttaactcg
aacaaattttctcgttccttcagttaacaatgccttataaacctttccTC
CATAACTCGAGCAAATTTGTGTAGTTCCCCGTGTGGCCGTGTTCGAGTTt
cagagactccactgtatttatCCCACAGCTGCCTCGGTGACCTAGTGTTT
TTTTCTCGCTCTATTCAGTTTTGGCTCCCTCAGGTAAATGAAACGGAGTT
CTACTTAATACTCGACTGGaatattttaacaattttgactTTACTGTAGG
CCCTTAGTTTAAACAACTATTTAGCAAAGTTTTCAGCagtattttctttg
aaatttttagctGACTTCACAAACGGGAAAAGTAAacgattgattgtcaa
taacTACGTTTACTGCAAAAATGATGGCGCACAGATGACCGCAGAAATGG
TGAGATGTAATAACCGATGGGATAACCTCGAGTTCAGATGCAAAGTTGTC
ATTCAAGGCTTGTGTACATACCGTGTTACATGCAAGCAAGCTGGTTCAGG
GTATAATTGCCCTGGAGTTCACAAATACCATCATATTAACTGCTGTTCCC
TCAAATGCAAACTCTAAAGAAACAGCTATctttcttttctaaaaaaatag
gCCGGTTTCAAAGATATCCGTGAACAGTTTTAACTTCTTGGTACAACATT
CACAAATGCCTTTGTCAGCTTCTTCTCACCATAAGTGAACTTCAGTGGCC
CCTCAAttcatcacgcaatcacgcaattttctttcgaaattcacgcattt
acgcaaattatttttcaattctcatgcattcacgcaaccgcaaaaagccc
attcacgcaaaccgctgggggcctggATTGAATGTCCTTTTCTTCATACT
CTTTCTTATTCTTGTTGgtatttgatttttatttctttaccCTGCAATCA
TGATCGAAATCTTTTGAGAATTCAGCTTATTTCCGCGAGAATATcaattt
tgggccatctctcaaatttaatcggatattttatttcaatttggctcggg
tttataggcctccaggctatattatgagccttattggaccactttttaac
ttttggatcctcaggtCCTAATTGtattaagtctcatgttaaaactcaga
gttaaaactctacccttccaatctactttagagcacttacaaatcgattg
tggtttcaaaacttcctggtggatttcccttttttctcaaatattacgac
catgattgtggtTGGTGTAAGTCTGTTAAGTTTTTTAAGATATTGTCTTG
AATTCttctttgataatttttaacGCGTTCCGGTTTCCATATCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048004-exon-scaffold_14-1491911889:589755..589811 | TCONS_00048004-exon-scaffold_14-1491911889:589755..589811 | Clytia hemisphaerica | exon |
| TCONS_00048004-exon-scaffold_14-1510915933:589755..589811 | TCONS_00048004-exon-scaffold_14-1510915933:589755..589811 | Clytia hemisphaerica | exon |
| TCONS_00048004-exon-scaffold_14-1575043694:589755..589811 | TCONS_00048004-exon-scaffold_14-1575043694:589755..589811 | Clytia hemisphaerica | exon |
| TCONS_00048004-exon-scaffold_14-1491911889:590120..590167 | TCONS_00048004-exon-scaffold_14-1491911889:590120..590167 | Clytia hemisphaerica | exon |
| TCONS_00048004-exon-scaffold_14-1510915933:590120..590167 | TCONS_00048004-exon-scaffold_14-1510915933:590120..590167 | Clytia hemisphaerica | exon |
| TCONS_00048004-exon-scaffold_14-1575043694:590120..590167 | TCONS_00048004-exon-scaffold_14-1575043694:590120..590167 | Clytia hemisphaerica | exon |
| TCONS_00048004-exon-scaffold_14-1491911889:591480..591660 | TCONS_00048004-exon-scaffold_14-1491911889:591480..591660 | Clytia hemisphaerica | exon |
| TCONS_00048004-exon-scaffold_14-1510915933:591480..591660 | TCONS_00048004-exon-scaffold_14-1510915933:591480..591660 | Clytia hemisphaerica | exon |
| TCONS_00048004-exon-scaffold_14-1575043694:591480..591660 | TCONS_00048004-exon-scaffold_14-1575043694:591480..591660 | Clytia hemisphaerica | exon |
| TCONS_00048004-exon-scaffold_14-1491911889:592465..593450 | TCONS_00048004-exon-scaffold_14-1491911889:592465..593450 | Clytia hemisphaerica | exon |
| TCONS_00048004-exon-scaffold_14-1510915933:592465..593450 | TCONS_00048004-exon-scaffold_14-1510915933:592465..593450 | Clytia hemisphaerica | exon |
| TCONS_00048004-exon-scaffold_14-1575043694:592465..593450 | TCONS_00048004-exon-scaffold_14-1575043694:592465..593450 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:589755..593450 + |
Blast
The following BLAST results are available for this feature:
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