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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047990 ID=TCONS_00047990|Name=TCONS_00047990|organism=Clytia hemisphaerica|type=transcript|length=672bp
GGAACAAAATCTGTCAAAGACTGctataACCAATGTTTGCCAGGCAGTTA
TTCATCCACCGGGTTAGACCTTGCCAACGAAAAATGTGCACTGTGTCCTA
AGGGAACTTTCTCATATCTTCATGGATCAACAGAATGTACTGTTTGTCCT
GGACAATCAACAACAGATAAAGAAGGAACTGCATTGGAGTCTAAATGTAC
AGCTTCACTCTCCATCGTTGGAATTTTACCGCTTGGTCCAAACGTCTCTG
TCAAAAGGAATTTCGAATTACGTTTATCGTGTTATTTTGAAGGCTCGCCT
GTTCCTGATGCAACGTGGCTCAAAGAAGGAGGCAATTTACCAAATTCTCA
CCGTCTCGAAGAATTATTTGATATGCATCTAATCAAGATTGGAATTTCAT
TAGTTGTACCTTCAGTTAGTACTCGCGACGCTGGAAAATACACGTGcatt
gtcaaaaataaaaatggcaACGACCATCGGGCCGTCAATGTCAAAGTTGT
TTAAGACGTCACAACGGCTGCCGGGCCGTTCAGTTGATCATTCACACAGA
TTGTTGGGCCGCTGAATTTGTTGGCACAATCATTTctgtgttttattttt
acaaaacacATATTTTATTTCCTTTATGTAATTTATATGGGTGGGGTAAA
TTGGAAAAATATAATTATCGTG Run BLAST on NCBI transcript from alignment at scaffold_14:306306..309368+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047990 ID=TCONS_00047990|Name=TCONS_00047990|organism=Clytia hemisphaerica|type=transcript|length=3063bp|location=Sequence derived from alignment at scaffold_14:306306..309368+ (Clytia hemisphaerica)
GGAACAAAATCTGTCAAAGACTGctatagtaagtgaaaagaaTCTGTTAG
GGAATGAGTCAGTAAAATACACCACTACAAGAAGATTTCGGACAGTCAAC
AAGTAAATATGGAAAACTTTAGACATTGTACACGATAATAAGTTTACACG
TGCCTCTCCGACTGTCATAGTTGATCTCCCCCAGCTCCTGGACTATTAGT
GAATGAGTTTNCGTGCCTCTCCGACTGTCATAGTTGATCTCCCCCAGCTC
CAGGACTATTAGTGAATGAGTTTGTTTTCCTTATCGATTGAGGTCATTAA
GCACGTCTTTGAACCTTGGTTATCGATTAAATCTACCCCATAACTACCCT
CATCTGTCAAAGAAGGCTATTATTAGTAAACAACTGCATCTCTTACAACC
TCTCTCTTGTTCAAGATTAAGACTTTTCAAATTAAGAATTTGGTCACAAC
TTCATTGAGTTTGTGACACTCAAACACCCAAAAGAGAAACAACGCTATAA
GAGCTGGCATTTACGATAACTCGGTTTTAAAAATAGATCTATTTTCAATC
CCTTGTTCAAGAATGTAGCTTGGCTGCTAGATGTCTCGACCACTTTAGAT
ATGCCCAAGTTCAGGAATTTCCGTTGTTGAGGACGGCGGTGTGACTGAAG
AGATTTGGAAGAACCCGCATTTCTGACCCGAAAAATCGAGGAcgataaaa
ttgttaatttatcGTCCTTTTTTGTTGATCGGGATCTAGAGAAATGAGAA
CTTTACCGTCCCTGTcgcaaaaaaaaacacatacgcaaatacataaactt
cgCTATTCCTTTCAAGATTCAACTCCAAATAGAACTTAGCCTAGGAATCC
AAGTGGTAACTTTGTTCGTGGTCTTTTCCttttaattctaaaattttgag
cttggattcccaggctaaataGTATTCATTAACTGTCAATCTTCTGCCAA
GAGCCatttgaacaacttttttgattttaccgTTTAACATATGACTCAAT
GGTGAGCACACTGatctttatatatccctggaccaagctatatccgtcat
ctttgattgaagtttttattgaaatcggtacccgagaagaagccattgta
gtgtttgaaactttgcctagCGACAAACGGCGTTACATCATTAGCGTTCA
AGCAAAactagacctagcgctctctccgcgggtaccaatttaaaaaaaac
tccaatcaaaatattttgcttggccggtattgagtaacttggtccaggga
tatataaaggtcagtgggtgaGCACCTGTCAGAATCAGATTTATTGatgg
tttcattttttatctacaGACCAATGTTTGCCAGGCAGTTATTCATCCAC
CGGGTTAGACCTTGCCAACGAAAAATGTGCACTGTGTCCTAAGGGAACTT
TCTCATATCTTCATGGATCAACAGAATGTACTGTTTGTCCTGGACAATCA
ACAACAGATAAAGAAGGAACTGCATTGGAGTCTAAATGTACAGGTTAGTG
agtttctattcatgatatgcaccattgcaatgtcttctggcataacatca
cggacccaatagctgaatggttgcaagtgacgtaaaattaatcagtacgt
cactttcaaccaatcatctgttggatccgtggaagacattgcaatggtgc
atatcatgaatttataTTTGATTGAGTTGAGTTGCAGCACTGCAATGTCT
ACTAGAATCAATGTCTTCGACATCACATCATAGACCCAGCACCTATCCTC
GTCTTAACCTGCATCGAGTTCCTCAGCACCTATCgatccgtgatgtaatg
ttagaagacattgcaatggtctATATCATGAATNacgaccaatcagctgt
tggatccgtgatgtaatgttagaagacattgcaatggtccATATCATGAA
ATAGGTTGAGTTGCAGCTGGTTTTGAGGCCAATTTTCCCACCTATAAACG
CTCATTTTTTTCGActgagaaaattagttccctttaaGGTATTGTAAGCA
TTGTCTTGTTTACCCAGGTTTGACAAACCGATAAGCTTTTTAATATAGAA
TTCTTTGAATTTTCGTTCTTCCCATAGCTTCACTCTCCATCGTTGGAATT
TTACCGCTTGGTCCAAACGTCTCTGTCAAAAGGAATTTCGAATTACGTTT
ATCGTGTTATTTTGAAGGCTCGCCTGTTCCTGATGCAACGTGGCTCAAAG
AAGGAGGTATAATTTACAGACCCAgatagacagacagacagacagacaga
cagacacatagacagacagacagacttATAAACCACCCTAACTGTTTGAG
TGttttcatacacgttttttataagaacatccaaaatttttgaagccttt
gaaaaatgttttatttcagtcctaaaaatgttcttagcatgttcttattt
tcaccatttttcgagcaattttgtccattttccaaagaaattgggtgttc
taGAGTCCCCAAAactgttcttagcttgttcttaacattttggccatcaa
gcCATATGttgttatatagtttgttcttataaaaagaaaacgtgtaatcT
CTTAAATATTGATTCTAGGAAATTTGCCCCGAGTAATTTCCCCTTTGGAA
AATTGCCCTCCTCTGTTTTTTTTGCTCGCTCCTCCAGACAATTACCCAGA
CTCTCAGAGTTTATGATTTTCCTTCGGTACTAACAGAAGACTTCATTGAT
ACTATAGAATCTTTCTTTTCAGGCAATTTACCAAATTCTCACCGTCTCGA
AGAATTATTTGATATGCATCTAATCAAGATTGGAATTTCATTAGTTGTAC
CTTCAGTTAGTACTCGCGACGCTGGAAAATACACGTGcattgtcaaaaat
aaaaatggcaACGACCATCGGGCCGTCAATGTCAAAGTTGTTTAAGACGT
CACAACGGCTGCCGGGCCGTTCAGTTGATCATTCACACAGATTGTTGGGC
CGCTGAATTTGTTGGCACAATCATTTctgtgttttatttttacaaaacac
ATATTTTATTTCCTTTATGTAATTTATATGGGTGGGGTAAATTGGAAAAA
TATAATTATCGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047990-exon-scaffold_14-1491911889:306306..306333 | TCONS_00047990-exon-scaffold_14-1491911889:306306..306333 | Clytia hemisphaerica | exon |
| TCONS_00047990-exon-scaffold_14-1510915933:306306..306333 | TCONS_00047990-exon-scaffold_14-1510915933:306306..306333 | Clytia hemisphaerica | exon |
| TCONS_00047990-exon-scaffold_14-1575043694:306306..306333 | TCONS_00047990-exon-scaffold_14-1575043694:306306..306333 | Clytia hemisphaerica | exon |
| TCONS_00047990-exon-scaffold_14-1491911889:307625..307798 | TCONS_00047990-exon-scaffold_14-1491911889:307625..307798 | Clytia hemisphaerica | exon |
| TCONS_00047990-exon-scaffold_14-1510915933:307625..307798 | TCONS_00047990-exon-scaffold_14-1510915933:307625..307798 | Clytia hemisphaerica | exon |
| TCONS_00047990-exon-scaffold_14-1575043694:307625..307798 | TCONS_00047990-exon-scaffold_14-1575043694:307625..307798 | Clytia hemisphaerica | exon |
| TCONS_00047990-exon-scaffold_14-1491911889:308383..308511 | TCONS_00047990-exon-scaffold_14-1491911889:308383..308511 | Clytia hemisphaerica | exon |
| TCONS_00047990-exon-scaffold_14-1510915933:308383..308511 | TCONS_00047990-exon-scaffold_14-1510915933:308383..308511 | Clytia hemisphaerica | exon |
| TCONS_00047990-exon-scaffold_14-1575043694:308383..308511 | TCONS_00047990-exon-scaffold_14-1575043694:308383..308511 | Clytia hemisphaerica | exon |
| TCONS_00047990-exon-scaffold_14-1491911889:309028..309368 | TCONS_00047990-exon-scaffold_14-1491911889:309028..309368 | Clytia hemisphaerica | exon |
| TCONS_00047990-exon-scaffold_14-1510915933:309028..309368 | TCONS_00047990-exon-scaffold_14-1510915933:309028..309368 | Clytia hemisphaerica | exon |
| TCONS_00047990-exon-scaffold_14-1575043694:309028..309368 | TCONS_00047990-exon-scaffold_14-1575043694:309028..309368 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:306306..309368 + |
Blast
The following BLAST results are available for this feature:
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