TCONS_00047982 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047982
Unique NameTCONS_00047982
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length565

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047982 ID=TCONS_00047982|Name=TCONS_00047982|organism=Clytia hemisphaerica|type=transcript|length=565bp
AGTCGATGGAGGTTTATCAGATTGGACGCAATGGAGCACGTGTGAGAAAC
CTTGCGGGGGGTCCATCGTCAACAGAACACGTGTATGTGACAACCCTCCG
CCATCAAGAGGCGGATCACAATGTTTTGGTAAAACTGTGGAAACCAAAAT
GGAATGTGTCATGCCGTGCCCAGAATCTAAAACCGACGGCTCTTGGTCCC
CTTGGAGCGACTGGAGTTCATGTCCGAAGCAGTGCACCAGAAATGGTGGA
TCCTTAATCAAAAGATACCGACAATGCAATATGCCACCACCAATGTTCGG
AGGAAAGCCTTGCCCTGGAAATTCGACAGAAGAAATCATTGGAtgttttg
atgtttgtccagttgATGGAGGTTTTAGCCAATGGTCTTCATTTACTCCA
TGCTCAAGAAGTTGTGGTACAGGATTCAAATCACGATATCGATTATGTAA
TGATCCAGTCCCTCAAGGATCTACAGCTCAAAATTGCACTGgtgcattca
atgaagcaaaacATTGTCGATTAGCTATTTGTGAAGGTGCTGTGAATGGA
AACTGGGGAAGCTAG
Run BLAST on NCBI

transcript from alignment at scaffold_14:234718..237228+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047982 ID=TCONS_00047982|Name=TCONS_00047982|organism=Clytia hemisphaerica|type=transcript|length=2511bp|location=Sequence derived from alignment at scaffold_14:234718..237228+ (Clytia hemisphaerica)
AGTCGATGGAGGTTTATCAGATTGGACGCAATGGAGCACGTGTGAGAAAC
CTTGCGGGGGGTCCATCGTCAACAGAACACGTGTATGTGACAACCCTCCG
CCATCAAGAGGCGGATCACAATGTTTTGGTAAAACTGTGGAAACCAAAAT
GGAATGTGTCATGCCGTGCCCAGGTAATTATGTTGCATaccagacggcac
acaacgtcaaaacaacgtccatgtgacattcataacgtccaaataacgtt
atttgaacgaagaacgttgtgtgccagctgggatacgACATAATTTTTAG
GAATGAGTGATCGaacattcaaataaaaatagTCAGGAGTTAtaagccta
tttcataggattggTGCCTCTGCCTACATGCTATTTTTTATTCCCTTTAA
ATGGGGGCAATGCACAAATCTGTGCAGATTTCCCTTCGAgaagaaagttg
aaaaaaatggtttttctatgaaacaatctaacACATTTACAATTTATAAG
ACCTTAGATGTTATTAAAAGGATAATCAGATGGCTTGACATATTTCGCAT
GTGAAATCTTTCTATTTCGTCCTTAGCAATACATTAAAGTatttttgcct
aaatatttCCCAAAGTCGAGATAATTAAGTtataaatttttgacttttag
taaaaaacaatagaatttcaacgtaagaaccgtgtgagaacccattttca
gaaattttctcGACTTTAAAATATAGCTAGACAAAAATACTTGGCTGTTT
TACTCAAATCCACAGAGGTTTTTAAAGTAATTCGATTTTATACAACGACA
AAAGACTTTGACCAGACGTTCTTTTCCTTAGAATCTAAAACCGACGGCTC
TTGGTCCCCTTGGAGCGACTGGAGTTCATGTCCGAAGCAGTGCACCAGAA
ATGGTGGATCCTTAATCAAAAGATACCGACAATGCAATATGCCACCACCA
ATGTTCGGAGGAAAGCCTTGCCCTGGAAATTCGACAGAAGAAATCATTGG
AtgttttgatgtttgtccaggtaGTTGATTATTGATTAAGGATTTAATCT
GTGCTTTGTATTTTTACAGAGGAGGAGAACGTGTATTTAGATCTTGACTA
ATTGACCGAGAAAGACGGAAGATTCATTGTGTTTCAAGACAAGGGCTAAA
GacgaatcttcaacctttcttaGGCGAGAAAAAAATAAAGCTTTAAGTTT
CCGTCACATTTCGGATGATGGATTAAATTGATTGACCAATGCTTAACTAT
GCTCAGCAACCAAAGCTGTCAAAATTCGCAAATATTCTGCCGTACAGCCA
TTTTAGAATAAGTTAAAAACAAGCTGTTATATAATTTGGAAGGTTTCGTG
TTTTACACGGCCTTTTTGGTCCATATCTCAAGATATTTGGCAATCTTAAT
TTTCAGCGGAAATATTTTCGTTTGAATGTTCAGTGAACTTTTGGATAGTA
AGCCACAAGTACGGCGTAATTTTATGGGAATTTAGTTGAATTTTCTGGGA
TTAAAATTCCTGTATACTAAcaaatcttttggtgtttttttgtgATTAAG
TTCATTTCAAATGATATAAAACCTCTTAATGTAGCATAAATAGGTGCTAA
AAACTAAATTGTCAACATTGTATTGATACGTTACGCAAATAGTAGGAAAA
TCACTTTATCTTACATATGTCATTATTAAAGTTTGACTCCGGTCCCATTT
ACTAGTTTATATTGTAAAATATAATTACAacatctttcttttttatttag
ttgATGGAGGTTTTAGCCAATGGTCTTCATTTACTCCATGCTCAAGAAGT
TGTGGTACAGGATTCAAATCACGATATCGATTATGTAATGATCCAGTCCC
TCAAGGATCTACAGCTCAAAATTGCACTGgtgcattcaatgaagcaaaac
ATTGTCGATTAGCTATTTGTGAAGGTTGGAATACTtttaaattcatgata
tgcaccattgcaatgtcttccacggatccaatagctgattggttgaaagt
gacgtattgattaattttacgtcatttacaaccaatcagaTGTTGGGttt
gtgatgtaatgtcagaagacattgcaatggtgtatTATAATATACATGGT
GTCCCGAAGAAAATTCCTGTGTAAGAACACGACTTCAAGTAGAAACAATT
TTGTGTGTATGTCTATAATGAAGGTcacaatatttgagaaaaaaagaaaa
ttcccacgaaatcctATAGCCGCACATTGGAAGAGCTCTAACTTaggttt
ttgtgaaatttgttaCAAAACGGATCTACTATGAGAAGCTTAAGAGCAGT
TTTCTTGAAATAGCTAGCTGCTGTGAATGGTAATTGGGGAAGCTAGGTCC
CAATAGTCTCCTGCTTGCAAAATGTCAGTTTTAATCTAGTTTCTCATACC
AAATTTGCATGTTTTTATGATATTTGTTACAAAACGGATCCACTATGAGA
AGCTAAGGGCAGTTTTCTTGAAATACATCTAGGTGCTGTGAATGGAAACT
GGGGAAGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030541XLOC_030541Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047982-exon-scaffold_14-1491911889:234718..234890TCONS_00047982-exon-scaffold_14-1491911889:234718..234890Clytia hemisphaericaexon
TCONS_00047982-exon-scaffold_14-1510915933:234718..234890TCONS_00047982-exon-scaffold_14-1510915933:234718..234890Clytia hemisphaericaexon
TCONS_00047982-exon-scaffold_14-1575043694:234718..234890TCONS_00047982-exon-scaffold_14-1575043694:234718..234890Clytia hemisphaericaexon
TCONS_00047982-exon-scaffold_14-1491911889:235549..235737TCONS_00047982-exon-scaffold_14-1491911889:235549..235737Clytia hemisphaericaexon
TCONS_00047982-exon-scaffold_14-1510915933:235549..235737TCONS_00047982-exon-scaffold_14-1510915933:235549..235737Clytia hemisphaericaexon
TCONS_00047982-exon-scaffold_14-1575043694:235549..235737TCONS_00047982-exon-scaffold_14-1575043694:235549..235737Clytia hemisphaericaexon
TCONS_00047982-exon-scaffold_14-1491911889:236468..236641TCONS_00047982-exon-scaffold_14-1491911889:236468..236641Clytia hemisphaericaexon
TCONS_00047982-exon-scaffold_14-1510915933:236468..236641TCONS_00047982-exon-scaffold_14-1510915933:236468..236641Clytia hemisphaericaexon
TCONS_00047982-exon-scaffold_14-1575043694:236468..236641TCONS_00047982-exon-scaffold_14-1575043694:236468..236641Clytia hemisphaericaexon
TCONS_00047982-exon-scaffold_14-1491911889:237200..237228TCONS_00047982-exon-scaffold_14-1491911889:237200..237228Clytia hemisphaericaexon
TCONS_00047982-exon-scaffold_14-1510915933:237200..237228TCONS_00047982-exon-scaffold_14-1510915933:237200..237228Clytia hemisphaericaexon
TCONS_00047982-exon-scaffold_14-1575043694:237200..237228TCONS_00047982-exon-scaffold_14-1575043694:237200..237228Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:234718..237228 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0996566	0.0468121	0	0	0	0	0	0	0	0	0	0	1.80613	0.645271	0.269577	1.34533	0.381048	0.240003	7.10311	8.27632	0.99444	0.804917	0.614719	1.64274	1.73666	0.810776	0.136649	0	0.483425	1.64965
Blast
[Close]
BLAST of TCONS_00047982 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 5.200e-25
Identity = 73/187 (39.04%), Postives = 95/187 (50.80%), Query Frame = 2 
Query:    2 VDGGLSDWTQWSTCEKPCGGSIVNRTRVCDNPPPSRGGSQCFGKTVETKMECVMPCPESKTDGXXXXXXXXXXCPKQCTRNGGSLIKRYRQCNMPPPMFGGKPCPGNSTEEIIGCFDVCPVDGGFSQWSSFTPCSRSCGTGFKSRYRLCNDPVPQGSTAQNCTGAFNEAKHCRLAICEGAVNGNWGS 562
            V GG S W+ W  C   CG  I  R+R+C+ P P+ GG  C G  +E +     PCP    DGSWS WS W  C + C R   +   R R CN P    GG+PC GN+ E I+     CPV G +S W  +  CS SCG G ++R RLCN+P P       C GA  + + C    C   ++G W +
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCP---VDGSWSEWSLWEECTRSCGRGNQT---RTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNP-PPAFGGSYCDGAETQMQVCNERNC--PIHGKWAT 4705

HSP 2 Score: 99.7525 bits (247), Expect = 1.311e-23
Identity = 73/179 (40.78%), Postives = 97/179 (54.19%), Query Frame = 2 
Query:    2 VDGGLSDWTQWSTCEKPCGGSIVNRTRVCDNPPPSRGGSQCFGKTVETKMECVMPCPESKTDGXXXXXXXXXXCPKQCTRNGGSLIKRYRQCNMPPPMFGGKPCPGNSTEEIIGCFDVCPVDGGFSQWSSFTPCSRSCGTGFKSRYRLCNDPVPQGSTAQNCTGAFNEAKHCRLAICEG 538
            + G  + W  WS C   CGG    RTR C +P P  GG +C G  V++      PCP   T G+WSPWS W +C + C  NGG + +RYR C+ PPP  GG+ C G  ++      D+CPVDG +  W S++ CS SCG G K+R RLC+ PVP     + C G   +   C +  C G
Sbjct: 4699 IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCP---THGNWSPWSGWGTCSRTC--NGGQM-RRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKG-GRPCPGDTTQVTRCNVQACPG 4870

HSP 3 Score: 93.5893 bits (231), Expect = 1.939e-21
Identity = 71/189 (37.57%), Postives = 99/189 (52.38%), Query Frame = 2 
Query:    2 VDGGLSDWTQWSTCEKPCGGSIVNRTRVCDNPPPSRGGSQCFGKTVETKMECVMPCPESK--TDGXXXXXXXXXXCPKQCTRNGGSLIKRYRQCNMPPPMFGGKPCPGNSTEEIIGCFDVCPVDGGFSQWSSFTPCSRSCGTGFKSRYRLCNDPVPQGSTAQNCTGAFNEAKHCRLAICEGAVNGNWGS 562
            V G  S W  W TC + CG     R R+C+NPPP+ GGS C G   ET+M+    C E      G W+ W+ WS+C   C   GG   +R R C+ P P +GG+ C G+  +      D CP  G +S WS +  CSR+C  G   RYR C++P P  +  + C G  ++ + C   +C   V+G+WGS
Sbjct: 4642 VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDG--AETQMQV---CNERNCPIHGKWATWASWSACSVSC---GGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNP-PPSNGGRACGGPDSQIQRCNTDMC--PVDGSWGS 4819
The following BLAST results are available for this feature:
BLAST of TCONS_00047982 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN15.200e-2539.04Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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